Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18000

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17990 and AO356_17995 are separated by 230 nucleotidesAO356_17995 and AO356_18000 are separated by 218 nucleotidesAO356_18000 and AO356_18005 are separated by 75 nucleotides AO356_17990: AO356_17990 - ferritin, at 4,060,155 to 4,060,625 _17990 AO356_17995: AO356_17995 - hypothetical protein, at 4,060,856 to 4,061,197 _17995 AO356_18000: AO356_18000 - FmdB family transcriptional regulator, at 4,061,416 to 4,061,637 _18000 AO356_18005: AO356_18005 - aspartate--tRNA(Asp/Asn) ligase, at 4,061,713 to 4,063,488 _18005 Position (kb) 4061 4062Strain fitness (log2 ratio) -1 0 1at 4060.421 kb on + strand, within AO356_17990at 4060.421 kb on + strand, within AO356_17990at 4060.422 kb on - strand, within AO356_17990at 4060.422 kb on - strand, within AO356_17990at 4060.425 kb on - strand, within AO356_17990at 4060.425 kb on - strand, within AO356_17990at 4060.425 kb on - strand, within AO356_17990at 4060.499 kb on + strand, within AO356_17990at 4060.623 kb on + strandat 4060.623 kb on + strandat 4060.624 kb on - strandat 4060.624 kb on - strandat 4060.626 kb on + strandat 4060.626 kb on + strandat 4060.627 kb on - strandat 4060.627 kb on - strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.702 kb on + strandat 4060.702 kb on + strandat 4060.703 kb on - strandat 4060.703 kb on - strandat 4060.713 kb on - strandat 4060.713 kb on - strandat 4060.744 kb on + strandat 4060.758 kb on + strandat 4060.759 kb on - strandat 4060.759 kb on - strandat 4060.759 kb on - strandat 4060.759 kb on - strandat 4060.759 kb on - strandat 4060.796 kb on + strandat 4060.797 kb on - strandat 4060.833 kb on + strandat 4060.834 kb on - strandat 4060.834 kb on - strandat 4060.855 kb on + strandat 4060.855 kb on + strandat 4060.855 kb on + strandat 4060.855 kb on + strandat 4060.856 kb on - strandat 4061.015 kb on + strand, within AO356_17995at 4061.015 kb on + strand, within AO356_17995at 4061.015 kb on + strand, within AO356_17995at 4061.016 kb on - strand, within AO356_17995at 4061.016 kb on - strand, within AO356_17995at 4061.016 kb on - strand, within AO356_17995at 4061.196 kb on - strandat 4061.287 kb on + strandat 4061.287 kb on + strandat 4061.287 kb on + strandat 4061.287 kb on + strandat 4061.287 kb on + strandat 4061.287 kb on + strandat 4061.322 kb on + strandat 4061.343 kb on + strandat 4061.343 kb on + strandat 4061.350 kb on + strandat 4061.350 kb on + strandat 4061.350 kb on + strandat 4061.350 kb on + strandat 4061.350 kb on + strandat 4061.350 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.352 kb on + strandat 4061.392 kb on + strandat 4061.392 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.425 kb on + strandat 4061.431 kb on + strandat 4061.431 kb on + strandat 4061.431 kb on + strandat 4061.575 kb on + strand, within AO356_18000at 4061.691 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,060,421 + AO356_17990 0.56 +0.1
4,060,421 + AO356_17990 0.56 -0.1
4,060,422 - AO356_17990 0.57 +0.0
4,060,422 - AO356_17990 0.57 +0.7
4,060,425 - AO356_17990 0.57 +1.0
4,060,425 - AO356_17990 0.57 -0.1
4,060,425 - AO356_17990 0.57 +1.1
4,060,499 + AO356_17990 0.73 -0.3
4,060,623 + +0.7
4,060,623 + -0.4
4,060,624 - +0.4
4,060,624 - -0.2
4,060,626 + +0.6
4,060,626 + -0.0
4,060,627 - -0.3
4,060,627 - +0.4
4,060,640 + +0.3
4,060,640 + -0.1
4,060,640 + -0.4
4,060,640 + -0.8
4,060,640 + +0.5
4,060,640 + -1.1
4,060,640 + -1.0
4,060,640 + -0.4
4,060,640 + +0.4
4,060,641 - -0.6
4,060,641 - -0.0
4,060,641 - +0.2
4,060,641 - -0.1
4,060,641 - -0.9
4,060,641 - -0.1
4,060,641 - +0.7
4,060,641 - +0.5
4,060,641 - +0.1
4,060,641 - +0.4
4,060,641 - -1.0
4,060,702 + -0.0
4,060,702 + +0.1
4,060,703 - +0.7
4,060,703 - +0.2
4,060,713 - -0.4
4,060,713 - +0.9
4,060,744 + +0.1
4,060,758 + +0.2
4,060,759 - -0.3
4,060,759 - +0.5
4,060,759 - -0.2
4,060,759 - -0.1
4,060,759 - -0.5
4,060,796 + -0.3
4,060,797 - +0.3
4,060,833 + +0.1
4,060,834 - +0.7
4,060,834 - -0.4
4,060,855 + +0.0
4,060,855 + +0.7
4,060,855 + -0.1
4,060,855 + +0.3
4,060,856 - +0.4
4,061,015 + AO356_17995 0.46 +0.3
4,061,015 + AO356_17995 0.46 +0.1
4,061,015 + AO356_17995 0.46 -1.1
4,061,016 - AO356_17995 0.47 +0.0
4,061,016 - AO356_17995 0.47 -0.4
4,061,016 - AO356_17995 0.47 -0.1
4,061,196 - -0.4
4,061,287 + -0.4
4,061,287 + -0.3
4,061,287 + -0.2
4,061,287 + +0.1
4,061,287 + -0.3
4,061,287 + +0.4
4,061,322 + -0.3
4,061,343 + -0.2
4,061,343 + +0.3
4,061,350 + +1.2
4,061,350 + -1.3
4,061,350 + -1.2
4,061,350 + +0.1
4,061,350 + -0.0
4,061,350 + +0.6
4,061,352 + +0.1
4,061,352 + -0.6
4,061,352 + +0.7
4,061,352 + -0.1
4,061,352 + +0.9
4,061,352 + -0.8
4,061,352 + -0.3
4,061,352 + +0.4
4,061,352 + +0.5
4,061,352 + -0.5
4,061,392 + +0.6
4,061,392 + +0.0
4,061,425 + -0.8
4,061,425 + +0.3
4,061,425 + +0.1
4,061,425 + -0.5
4,061,425 + +0.7
4,061,425 + +0.4
4,061,425 + +1.0
4,061,425 + +0.4
4,061,425 + +0.3
4,061,425 + +1.3
4,061,431 + +0.5
4,061,431 + -0.1
4,061,431 + +0.5
4,061,575 + AO356_18000 0.72 +0.8
4,061,691 + -0.7

Or see this region's nucleotide sequence