Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17985

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17975 and AO356_17980 are separated by 3 nucleotidesAO356_17980 and AO356_17985 are separated by 77 nucleotidesAO356_17985 and AO356_17990 are separated by 397 nucleotides AO356_17975: AO356_17975 - histidine triad (HIT) protein, at 4,058,439 to 4,058,864 _17975 AO356_17980: AO356_17980 - hypothetical protein, at 4,058,868 to 4,059,074 _17980 AO356_17985: AO356_17985 - cold-shock protein, at 4,059,152 to 4,059,757 _17985 AO356_17990: AO356_17990 - ferritin, at 4,060,155 to 4,060,625 _17990 Position (kb) 4059 4060Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4058.180 kb on + strandat 4058.191 kb on + strandat 4058.286 kb on + strandat 4058.287 kb on - strandat 4058.287 kb on - strandat 4058.287 kb on - strandat 4058.287 kb on - strandat 4058.432 kb on - strandat 4058.449 kb on + strandat 4058.449 kb on + strandat 4058.450 kb on - strandat 4058.450 kb on - strandat 4058.450 kb on - strandat 4058.450 kb on - strandat 4058.602 kb on + strand, within AO356_17975at 4058.602 kb on + strand, within AO356_17975at 4058.602 kb on + strand, within AO356_17975at 4058.603 kb on - strand, within AO356_17975at 4058.603 kb on - strand, within AO356_17975at 4058.603 kb on - strand, within AO356_17975at 4058.683 kb on + strand, within AO356_17975at 4058.683 kb on + strand, within AO356_17975at 4058.683 kb on + strand, within AO356_17975at 4058.683 kb on + strand, within AO356_17975at 4058.683 kb on + strand, within AO356_17975at 4058.683 kb on + strand, within AO356_17975at 4058.684 kb on - strand, within AO356_17975at 4058.684 kb on - strand, within AO356_17975at 4058.684 kb on - strand, within AO356_17975at 4058.688 kb on - strand, within AO356_17975at 4058.688 kb on - strand, within AO356_17975at 4058.688 kb on - strand, within AO356_17975at 4058.688 kb on - strand, within AO356_17975at 4058.784 kb on + strand, within AO356_17975at 4058.784 kb on + strand, within AO356_17975at 4058.784 kb on + strand, within AO356_17975at 4058.784 kb on + strand, within AO356_17975at 4058.785 kb on - strand, within AO356_17975at 4058.785 kb on - strand, within AO356_17975at 4058.785 kb on - strand, within AO356_17975at 4058.785 kb on - strand, within AO356_17975at 4058.785 kb on - strand, within AO356_17975at 4058.785 kb on - strand, within AO356_17975at 4058.785 kb on - strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.786 kb on + strand, within AO356_17975at 4058.787 kb on - strand, within AO356_17975at 4058.787 kb on - strand, within AO356_17975at 4058.787 kb on - strand, within AO356_17975at 4058.787 kb on - strand, within AO356_17975at 4058.787 kb on - strand, within AO356_17975at 4058.787 kb on - strand, within AO356_17975at 4058.787 kb on - strand, within AO356_17975at 4059.069 kb on + strandat 4059.069 kb on + strandat 4059.070 kb on - strandat 4059.070 kb on - strandat 4059.070 kb on - strandat 4059.075 kb on + strandat 4059.103 kb on + strandat 4059.378 kb on + strand, within AO356_17985at 4059.378 kb on + strand, within AO356_17985at 4059.378 kb on + strand, within AO356_17985at 4059.378 kb on + strand, within AO356_17985at 4059.379 kb on - strand, within AO356_17985at 4059.379 kb on - strand, within AO356_17985at 4059.379 kb on - strand, within AO356_17985at 4059.379 kb on - strand, within AO356_17985at 4059.379 kb on - strand, within AO356_17985at 4059.414 kb on + strand, within AO356_17985at 4059.414 kb on + strand, within AO356_17985at 4059.629 kb on + strand, within AO356_17985at 4059.648 kb on + strand, within AO356_17985at 4059.648 kb on + strand, within AO356_17985at 4059.648 kb on + strand, within AO356_17985at 4059.648 kb on + strand, within AO356_17985at 4059.648 kb on + strand, within AO356_17985at 4059.648 kb on + strand, within AO356_17985at 4059.649 kb on - strand, within AO356_17985at 4059.649 kb on - strand, within AO356_17985at 4059.649 kb on - strand, within AO356_17985at 4059.649 kb on - strand, within AO356_17985at 4059.649 kb on - strand, within AO356_17985at 4059.672 kb on + strand, within AO356_17985at 4059.672 kb on + strand, within AO356_17985at 4059.672 kb on + strand, within AO356_17985at 4059.697 kb on + strandat 4059.844 kb on + strandat 4059.845 kb on - strandat 4059.845 kb on - strandat 4059.858 kb on + strandat 4059.858 kb on + strandat 4059.858 kb on + strandat 4059.858 kb on + strandat 4059.859 kb on - strandat 4059.859 kb on - strandat 4059.866 kb on - strandat 4059.901 kb on + strandat 4059.902 kb on - strandat 4059.902 kb on - strandat 4059.902 kb on - strandat 4059.905 kb on + strandat 4059.905 kb on + strandat 4059.906 kb on - strandat 4060.040 kb on - strandat 4060.087 kb on - strandat 4060.103 kb on + strandat 4060.104 kb on - strandat 4060.138 kb on + strandat 4060.138 kb on + strandat 4060.138 kb on + strandat 4060.138 kb on + strandat 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.233 kb on + strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.234 kb on - strand, within AO356_17990at 4060.242 kb on + strand, within AO356_17990at 4060.243 kb on - strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.320 kb on + strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.321 kb on - strand, within AO356_17990at 4060.395 kb on + strand, within AO356_17990at 4060.396 kb on - strand, within AO356_17990at 4060.404 kb on + strand, within AO356_17990at 4060.404 kb on + strand, within AO356_17990at 4060.404 kb on + strand, within AO356_17990at 4060.404 kb on + strand, within AO356_17990at 4060.404 kb on + strand, within AO356_17990at 4060.404 kb on + strand, within AO356_17990at 4060.404 kb on + strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.405 kb on - strand, within AO356_17990at 4060.421 kb on + strand, within AO356_17990at 4060.421 kb on + strand, within AO356_17990at 4060.422 kb on - strand, within AO356_17990at 4060.422 kb on - strand, within AO356_17990at 4060.425 kb on - strand, within AO356_17990at 4060.425 kb on - strand, within AO356_17990at 4060.425 kb on - strand, within AO356_17990at 4060.499 kb on + strand, within AO356_17990at 4060.623 kb on + strandat 4060.623 kb on + strandat 4060.624 kb on - strandat 4060.624 kb on - strandat 4060.626 kb on + strandat 4060.626 kb on + strandat 4060.627 kb on - strandat 4060.627 kb on - strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.640 kb on + strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.641 kb on - strandat 4060.702 kb on + strandat 4060.702 kb on + strandat 4060.703 kb on - strandat 4060.703 kb on - strandat 4060.713 kb on - strandat 4060.713 kb on - strandat 4060.744 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,058,180 + +0.2
4,058,191 + -2.4
4,058,286 + +0.6
4,058,287 - -0.4
4,058,287 - -0.4
4,058,287 - +1.1
4,058,287 - -0.5
4,058,432 - +0.6
4,058,449 + +0.4
4,058,449 + -0.5
4,058,450 - -1.4
4,058,450 - +0.5
4,058,450 - -0.1
4,058,450 - +0.0
4,058,602 + AO356_17975 0.38 +0.8
4,058,602 + AO356_17975 0.38 -1.4
4,058,602 + AO356_17975 0.38 -1.3
4,058,603 - AO356_17975 0.38 +1.1
4,058,603 - AO356_17975 0.38 +0.4
4,058,603 - AO356_17975 0.38 +0.1
4,058,683 + AO356_17975 0.57 +0.4
4,058,683 + AO356_17975 0.57 +0.1
4,058,683 + AO356_17975 0.57 +0.5
4,058,683 + AO356_17975 0.57 +0.9
4,058,683 + AO356_17975 0.57 +0.5
4,058,683 + AO356_17975 0.57 -1.0
4,058,684 - AO356_17975 0.58 +1.6
4,058,684 - AO356_17975 0.58 -0.6
4,058,684 - AO356_17975 0.58 -1.1
4,058,688 - AO356_17975 0.58 +0.7
4,058,688 - AO356_17975 0.58 -1.3
4,058,688 - AO356_17975 0.58 +0.1
4,058,688 - AO356_17975 0.58 -0.9
4,058,784 + AO356_17975 0.81 -2.7
4,058,784 + AO356_17975 0.81 +0.7
4,058,784 + AO356_17975 0.81 -0.2
4,058,784 + AO356_17975 0.81 -0.1
4,058,785 - AO356_17975 0.81 +0.1
4,058,785 - AO356_17975 0.81 +0.4
4,058,785 - AO356_17975 0.81 -2.9
4,058,785 - AO356_17975 0.81 -0.1
4,058,785 - AO356_17975 0.81 -0.5
4,058,785 - AO356_17975 0.81 +0.3
4,058,785 - AO356_17975 0.81 -0.3
4,058,786 + AO356_17975 0.81 +0.2
4,058,786 + AO356_17975 0.81 +0.2
4,058,786 + AO356_17975 0.81 -0.1
4,058,786 + AO356_17975 0.81 +1.0
4,058,786 + AO356_17975 0.81 -0.0
4,058,786 + AO356_17975 0.81 -0.0
4,058,786 + AO356_17975 0.81 +0.8
4,058,786 + AO356_17975 0.81 +0.6
4,058,786 + AO356_17975 0.81 +0.6
4,058,786 + AO356_17975 0.81 +0.5
4,058,786 + AO356_17975 0.81 +0.8
4,058,786 + AO356_17975 0.81 +0.6
4,058,786 + AO356_17975 0.81 -0.4
4,058,786 + AO356_17975 0.81 +0.2
4,058,786 + AO356_17975 0.81 -0.1
4,058,786 + AO356_17975 0.81 +0.9
4,058,786 + AO356_17975 0.81 -0.0
4,058,786 + AO356_17975 0.81 +0.9
4,058,786 + AO356_17975 0.81 -0.2
4,058,787 - AO356_17975 0.82 -0.3
4,058,787 - AO356_17975 0.82 +2.4
4,058,787 - AO356_17975 0.82 +1.5
4,058,787 - AO356_17975 0.82 +0.8
4,058,787 - AO356_17975 0.82 +0.7
4,058,787 - AO356_17975 0.82 -0.1
4,058,787 - AO356_17975 0.82 -0.4
4,059,069 + +0.0
4,059,069 + +0.2
4,059,070 - +0.3
4,059,070 - +0.7
4,059,070 - -0.4
4,059,075 + -0.7
4,059,103 + +0.4
4,059,378 + AO356_17985 0.37 -0.2
4,059,378 + AO356_17985 0.37 +1.0
4,059,378 + AO356_17985 0.37 -0.5
4,059,378 + AO356_17985 0.37 +0.2
4,059,379 - AO356_17985 0.37 +0.7
4,059,379 - AO356_17985 0.37 +0.2
4,059,379 - AO356_17985 0.37 -0.3
4,059,379 - AO356_17985 0.37 +2.1
4,059,379 - AO356_17985 0.37 +1.3
4,059,414 + AO356_17985 0.43 +0.2
4,059,414 + AO356_17985 0.43 +1.1
4,059,629 + AO356_17985 0.79 +1.3
4,059,648 + AO356_17985 0.82 +0.0
4,059,648 + AO356_17985 0.82 -0.1
4,059,648 + AO356_17985 0.82 +1.3
4,059,648 + AO356_17985 0.82 +1.9
4,059,648 + AO356_17985 0.82 +0.3
4,059,648 + AO356_17985 0.82 +0.5
4,059,649 - AO356_17985 0.82 +1.1
4,059,649 - AO356_17985 0.82 +1.3
4,059,649 - AO356_17985 0.82 +0.7
4,059,649 - AO356_17985 0.82 +0.7
4,059,649 - AO356_17985 0.82 +0.3
4,059,672 + AO356_17985 0.86 +0.3
4,059,672 + AO356_17985 0.86 +0.7
4,059,672 + AO356_17985 0.86 +0.7
4,059,697 + +2.1
4,059,844 + +1.6
4,059,845 - -1.7
4,059,845 - +0.6
4,059,858 + +0.5
4,059,858 + +0.6
4,059,858 + +1.1
4,059,858 + +2.0
4,059,859 - -1.8
4,059,859 - +0.1
4,059,866 - -1.3
4,059,901 + +0.6
4,059,902 - -0.3
4,059,902 - -0.4
4,059,902 - -0.2
4,059,905 + +0.1
4,059,905 + +0.9
4,059,906 - -0.0
4,060,040 - -0.5
4,060,087 - -0.0
4,060,103 + +0.4
4,060,104 - -0.1
4,060,138 + -2.3
4,060,138 + -0.1
4,060,138 + +0.8
4,060,138 + -0.3
4,060,233 + AO356_17990 0.17 +0.1
4,060,233 + AO356_17990 0.17 -0.8
4,060,233 + AO356_17990 0.17 +2.1
4,060,233 + AO356_17990 0.17 -0.2
4,060,233 + AO356_17990 0.17 +0.5
4,060,233 + AO356_17990 0.17 +0.1
4,060,233 + AO356_17990 0.17 +0.1
4,060,233 + AO356_17990 0.17 +0.7
4,060,233 + AO356_17990 0.17 -1.2
4,060,234 - AO356_17990 0.17 +0.5
4,060,234 - AO356_17990 0.17 -0.1
4,060,234 - AO356_17990 0.17 -0.4
4,060,234 - AO356_17990 0.17 +0.5
4,060,234 - AO356_17990 0.17 +0.0
4,060,234 - AO356_17990 0.17 +0.2
4,060,234 - AO356_17990 0.17 +0.1
4,060,234 - AO356_17990 0.17 +0.0
4,060,234 - AO356_17990 0.17 +0.8
4,060,234 - AO356_17990 0.17 -0.0
4,060,234 - AO356_17990 0.17 -1.1
4,060,234 - AO356_17990 0.17 +0.2
4,060,234 - AO356_17990 0.17 +0.0
4,060,234 - AO356_17990 0.17 +0.6
4,060,234 - AO356_17990 0.17 +0.8
4,060,242 + AO356_17990 0.18 +0.8
4,060,243 - AO356_17990 0.19 -0.3
4,060,320 + AO356_17990 0.35 -0.5
4,060,320 + AO356_17990 0.35 +1.6
4,060,320 + AO356_17990 0.35 +0.6
4,060,320 + AO356_17990 0.35 +0.9
4,060,320 + AO356_17990 0.35 +0.1
4,060,320 + AO356_17990 0.35 +0.0
4,060,320 + AO356_17990 0.35 +1.2
4,060,320 + AO356_17990 0.35 +0.0
4,060,320 + AO356_17990 0.35 -0.1
4,060,320 + AO356_17990 0.35 +0.3
4,060,320 + AO356_17990 0.35 -1.2
4,060,321 - AO356_17990 0.35 +1.0
4,060,321 - AO356_17990 0.35 +0.1
4,060,321 - AO356_17990 0.35 +0.2
4,060,321 - AO356_17990 0.35 -2.0
4,060,321 - AO356_17990 0.35 +0.1
4,060,321 - AO356_17990 0.35 -0.8
4,060,321 - AO356_17990 0.35 +0.1
4,060,321 - AO356_17990 0.35 +0.1
4,060,321 - AO356_17990 0.35 +2.0
4,060,321 - AO356_17990 0.35 -0.2
4,060,321 - AO356_17990 0.35 -0.2
4,060,395 + AO356_17990 0.51 +1.0
4,060,396 - AO356_17990 0.51 -1.7
4,060,404 + AO356_17990 0.53 +0.4
4,060,404 + AO356_17990 0.53 +1.2
4,060,404 + AO356_17990 0.53 +0.6
4,060,404 + AO356_17990 0.53 +1.3
4,060,404 + AO356_17990 0.53 +1.1
4,060,404 + AO356_17990 0.53 +0.5
4,060,404 + AO356_17990 0.53 +1.3
4,060,405 - AO356_17990 0.53 +0.2
4,060,405 - AO356_17990 0.53 +1.2
4,060,405 - AO356_17990 0.53 +0.1
4,060,405 - AO356_17990 0.53 -0.6
4,060,405 - AO356_17990 0.53 -0.3
4,060,405 - AO356_17990 0.53 +0.3
4,060,405 - AO356_17990 0.53 -0.6
4,060,405 - AO356_17990 0.53 -1.0
4,060,405 - AO356_17990 0.53 +0.2
4,060,405 - AO356_17990 0.53 +0.4
4,060,421 + AO356_17990 0.56 +0.1
4,060,421 + AO356_17990 0.56 -0.1
4,060,422 - AO356_17990 0.57 +0.0
4,060,422 - AO356_17990 0.57 +0.7
4,060,425 - AO356_17990 0.57 +1.0
4,060,425 - AO356_17990 0.57 -0.1
4,060,425 - AO356_17990 0.57 +1.1
4,060,499 + AO356_17990 0.73 -0.3
4,060,623 + +0.7
4,060,623 + -0.4
4,060,624 - +0.4
4,060,624 - -0.2
4,060,626 + +0.6
4,060,626 + -0.0
4,060,627 - -0.3
4,060,627 - +0.4
4,060,640 + +0.3
4,060,640 + -0.1
4,060,640 + -0.4
4,060,640 + -0.8
4,060,640 + +0.5
4,060,640 + -1.1
4,060,640 + -1.0
4,060,640 + -0.4
4,060,640 + +0.4
4,060,641 - -0.6
4,060,641 - -0.0
4,060,641 - +0.2
4,060,641 - -0.1
4,060,641 - -0.9
4,060,641 - -0.1
4,060,641 - +0.7
4,060,641 - +0.5
4,060,641 - +0.1
4,060,641 - +0.4
4,060,641 - -1.0
4,060,702 + -0.0
4,060,702 + +0.1
4,060,703 - +0.7
4,060,703 - +0.2
4,060,713 - -0.4
4,060,713 - +0.9
4,060,744 + +0.1

Or see this region's nucleotide sequence