Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17485

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17480 and AO356_17485 are separated by 256 nucleotidesAO356_17485 and AO356_17490 are separated by 5 nucleotides AO356_17480: AO356_17480 - LPS export ABC transporter permease LptG, at 3,936,333 to 3,937,394 _17480 AO356_17485: AO356_17485 - elongation factor 4, at 3,937,651 to 3,939,450 _17485 AO356_17490: AO356_17490 - signal peptidase, at 3,939,456 to 3,940,310 _17490 Position (kb) 3937 3938 3939 3940Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3937.397 kb on + strandat 3937.397 kb on + strandat 3937.398 kb on - strandat 3937.483 kb on + strandat 3937.498 kb on + strandat 3937.499 kb on - strandat 3937.593 kb on + strandat 3937.593 kb on + strandat 3937.593 kb on + strandat 3937.846 kb on + strand, within AO356_17485at 3937.846 kb on + strand, within AO356_17485at 3937.846 kb on + strand, within AO356_17485at 3937.846 kb on + strand, within AO356_17485at 3937.846 kb on + strand, within AO356_17485at 3937.870 kb on + strand, within AO356_17485at 3937.915 kb on + strand, within AO356_17485at 3937.915 kb on + strand, within AO356_17485at 3937.915 kb on + strand, within AO356_17485at 3938.266 kb on + strand, within AO356_17485at 3938.266 kb on + strand, within AO356_17485at 3938.545 kb on + strand, within AO356_17485at 3938.635 kb on + strand, within AO356_17485at 3938.635 kb on + strand, within AO356_17485at 3938.635 kb on + strand, within AO356_17485at 3938.635 kb on + strand, within AO356_17485at 3938.986 kb on + strand, within AO356_17485at 3939.052 kb on + strand, within AO356_17485at 3939.175 kb on + strand, within AO356_17485at 3939.175 kb on + strand, within AO356_17485at 3939.175 kb on + strand, within AO356_17485at 3939.276 kb on + strandat 3939.276 kb on + strandat 3939.276 kb on + strandat 3939.276 kb on + strandat 3939.276 kb on + strandat 3939.319 kb on + strandat 3939.444 kb on + strandat 3939.444 kb on + strandat 3939.444 kb on + strandat 3939.444 kb on + strandat 3939.448 kb on + strandat 3939.448 kb on + strandat 3939.455 kb on + strandat 3939.455 kb on + strandat 3939.455 kb on + strandat 3940.392 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,937,397 + -0.4
3,937,397 + -0.5
3,937,398 - +0.0
3,937,483 + +0.5
3,937,498 + +0.0
3,937,499 - +1.5
3,937,593 + -1.1
3,937,593 + -0.1
3,937,593 + -2.4
3,937,846 + AO356_17485 0.11 +1.3
3,937,846 + AO356_17485 0.11 +1.8
3,937,846 + AO356_17485 0.11 +0.3
3,937,846 + AO356_17485 0.11 +2.8
3,937,846 + AO356_17485 0.11 +2.2
3,937,870 + AO356_17485 0.12 -1.5
3,937,915 + AO356_17485 0.15 +1.9
3,937,915 + AO356_17485 0.15 +1.9
3,937,915 + AO356_17485 0.15 +1.1
3,938,266 + AO356_17485 0.34 +0.3
3,938,266 + AO356_17485 0.34 +1.1
3,938,545 + AO356_17485 0.50 +2.1
3,938,635 + AO356_17485 0.55 -0.4
3,938,635 + AO356_17485 0.55 +0.3
3,938,635 + AO356_17485 0.55 +0.1
3,938,635 + AO356_17485 0.55 +0.4
3,938,986 + AO356_17485 0.74 +0.9
3,939,052 + AO356_17485 0.78 -0.5
3,939,175 + AO356_17485 0.85 -1.7
3,939,175 + AO356_17485 0.85 +1.7
3,939,175 + AO356_17485 0.85 -0.4
3,939,276 + +2.8
3,939,276 + +1.5
3,939,276 + +1.8
3,939,276 + +2.1
3,939,276 + +2.2
3,939,319 + +0.3
3,939,444 + +0.2
3,939,444 + +0.9
3,939,444 + -0.1
3,939,444 + +0.5
3,939,448 + -0.5
3,939,448 + +0.5
3,939,455 + +0.1
3,939,455 + +1.7
3,939,455 + +0.9
3,940,392 + +0.6

Or see this region's nucleotide sequence