Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17035

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17030 and AO356_17035 are separated by 102 nucleotidesAO356_17035 and AO356_17040 are separated by 190 nucleotides AO356_17030: AO356_17030 - tryptophan--tRNA ligase, at 3,835,088 to 3,836,443 _17030 AO356_17035: AO356_17035 - ATPase, at 3,836,546 to 3,837,640 _17035 AO356_17040: AO356_17040 - AraC family transcriptional regulator, at 3,837,831 to 3,838,826 _17040 Position (kb) 3836 3837 3838Strain fitness (log2 ratio) -2 -1 0 1 2at 3836.508 kb on + strandat 3836.546 kb on - strandat 3836.546 kb on - strandat 3836.556 kb on + strandat 3836.557 kb on - strandat 3836.557 kb on - strandat 3836.564 kb on + strandat 3836.642 kb on + strandat 3836.732 kb on + strand, within AO356_17035at 3836.732 kb on + strand, within AO356_17035at 3836.733 kb on - strand, within AO356_17035at 3836.733 kb on - strand, within AO356_17035at 3836.733 kb on - strand, within AO356_17035at 3836.733 kb on - strand, within AO356_17035at 3836.765 kb on + strand, within AO356_17035at 3836.765 kb on + strand, within AO356_17035at 3836.766 kb on - strand, within AO356_17035at 3836.766 kb on - strand, within AO356_17035at 3837.053 kb on + strand, within AO356_17035at 3837.053 kb on + strand, within AO356_17035at 3837.053 kb on + strand, within AO356_17035at 3837.054 kb on - strand, within AO356_17035at 3837.054 kb on - strand, within AO356_17035at 3837.054 kb on - strand, within AO356_17035at 3837.377 kb on + strand, within AO356_17035at 3837.377 kb on + strand, within AO356_17035at 3837.489 kb on - strand, within AO356_17035at 3837.543 kb on - strandat 3837.543 kb on - strandat 3837.639 kb on - strandat 3837.688 kb on - strandat 3837.881 kb on + strandat 3837.881 kb on + strandat 3837.881 kb on + strandat 3837.882 kb on - strandat 3837.882 kb on - strandat 3837.882 kb on - strandat 3837.882 kb on - strandat 3837.882 kb on - strandat 3837.934 kb on + strand, within AO356_17040at 3837.934 kb on + strand, within AO356_17040at 3837.934 kb on + strand, within AO356_17040at 3837.934 kb on + strand, within AO356_17040at 3837.935 kb on - strand, within AO356_17040at 3837.935 kb on - strand, within AO356_17040at 3838.009 kb on + strand, within AO356_17040at 3838.009 kb on + strand, within AO356_17040at 3838.009 kb on + strand, within AO356_17040at 3838.010 kb on - strand, within AO356_17040at 3838.010 kb on - strand, within AO356_17040at 3838.010 kb on - strand, within AO356_17040at 3838.010 kb on - strand, within AO356_17040at 3838.010 kb on - strand, within AO356_17040at 3838.201 kb on + strand, within AO356_17040at 3838.201 kb on + strand, within AO356_17040at 3838.202 kb on - strand, within AO356_17040at 3838.219 kb on + strand, within AO356_17040at 3838.220 kb on - strand, within AO356_17040at 3838.279 kb on + strand, within AO356_17040at 3838.280 kb on - strand, within AO356_17040at 3838.285 kb on + strand, within AO356_17040at 3838.285 kb on + strand, within AO356_17040at 3838.285 kb on + strand, within AO356_17040at 3838.286 kb on - strand, within AO356_17040at 3838.286 kb on - strand, within AO356_17040at 3838.286 kb on - strand, within AO356_17040at 3838.286 kb on - strand, within AO356_17040at 3838.286 kb on - strand, within AO356_17040at 3838.408 kb on + strand, within AO356_17040at 3838.408 kb on + strand, within AO356_17040at 3838.408 kb on + strand, within AO356_17040at 3838.409 kb on - strand, within AO356_17040at 3838.409 kb on - strand, within AO356_17040at 3838.521 kb on + strand, within AO356_17040at 3838.521 kb on + strand, within AO356_17040at 3838.522 kb on - strand, within AO356_17040at 3838.522 kb on - strand, within AO356_17040at 3838.522 kb on - strand, within AO356_17040

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,836,508 + +0.9
3,836,546 - +0.7
3,836,546 - +2.1
3,836,556 + +0.8
3,836,557 - +0.9
3,836,557 - +0.0
3,836,564 + +0.7
3,836,642 + +0.7
3,836,732 + AO356_17035 0.17 +0.5
3,836,732 + AO356_17035 0.17 -0.5
3,836,733 - AO356_17035 0.17 +0.5
3,836,733 - AO356_17035 0.17 +0.5
3,836,733 - AO356_17035 0.17 +1.1
3,836,733 - AO356_17035 0.17 -0.2
3,836,765 + AO356_17035 0.20 +0.2
3,836,765 + AO356_17035 0.20 -0.1
3,836,766 - AO356_17035 0.20 +0.2
3,836,766 - AO356_17035 0.20 +1.2
3,837,053 + AO356_17035 0.46 +0.6
3,837,053 + AO356_17035 0.46 +1.4
3,837,053 + AO356_17035 0.46 +0.4
3,837,054 - AO356_17035 0.46 +1.7
3,837,054 - AO356_17035 0.46 +0.0
3,837,054 - AO356_17035 0.46 +0.9
3,837,377 + AO356_17035 0.76 -0.4
3,837,377 + AO356_17035 0.76 +0.7
3,837,489 - AO356_17035 0.86 +0.5
3,837,543 - -0.6
3,837,543 - +0.9
3,837,639 - -0.4
3,837,688 - +0.0
3,837,881 + +0.1
3,837,881 + +0.6
3,837,881 + +0.1
3,837,882 - -0.2
3,837,882 - -0.1
3,837,882 - +1.0
3,837,882 - -0.4
3,837,882 - -0.3
3,837,934 + AO356_17040 0.10 +1.3
3,837,934 + AO356_17040 0.10 +0.1
3,837,934 + AO356_17040 0.10 +0.7
3,837,934 + AO356_17040 0.10 -0.3
3,837,935 - AO356_17040 0.10 +0.4
3,837,935 - AO356_17040 0.10 +0.9
3,838,009 + AO356_17040 0.18 -0.2
3,838,009 + AO356_17040 0.18 -0.2
3,838,009 + AO356_17040 0.18 -0.3
3,838,010 - AO356_17040 0.18 +0.0
3,838,010 - AO356_17040 0.18 +0.7
3,838,010 - AO356_17040 0.18 +0.2
3,838,010 - AO356_17040 0.18 -0.1
3,838,010 - AO356_17040 0.18 +0.3
3,838,201 + AO356_17040 0.37 +0.1
3,838,201 + AO356_17040 0.37 +0.4
3,838,202 - AO356_17040 0.37 -0.2
3,838,219 + AO356_17040 0.39 -0.3
3,838,220 - AO356_17040 0.39 -2.0
3,838,279 + AO356_17040 0.45 +0.0
3,838,280 - AO356_17040 0.45 -0.3
3,838,285 + AO356_17040 0.46 +0.1
3,838,285 + AO356_17040 0.46 +0.7
3,838,285 + AO356_17040 0.46 +0.5
3,838,286 - AO356_17040 0.46 +0.4
3,838,286 - AO356_17040 0.46 +0.4
3,838,286 - AO356_17040 0.46 +0.0
3,838,286 - AO356_17040 0.46 +0.5
3,838,286 - AO356_17040 0.46 +0.2
3,838,408 + AO356_17040 0.58 +0.4
3,838,408 + AO356_17040 0.58 +0.8
3,838,408 + AO356_17040 0.58 -0.4
3,838,409 - AO356_17040 0.58 -0.1
3,838,409 - AO356_17040 0.58 -1.0
3,838,521 + AO356_17040 0.69 +0.5
3,838,521 + AO356_17040 0.69 +0.7
3,838,522 - AO356_17040 0.69 -0.1
3,838,522 - AO356_17040 0.69 -0.8
3,838,522 - AO356_17040 0.69 +1.4

Or see this region's nucleotide sequence