Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16185

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16180 and AO356_16185 are separated by 145 nucleotidesAO356_16185 and AO356_16190 are separated by 75 nucleotides AO356_16180: AO356_16180 - ketol-acid reductoisomerase, at 3,657,834 to 3,658,850 _16180 AO356_16185: AO356_16185 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,658,996 to 3,659,841 _16185 AO356_16190: AO356_16190 - sulfoxide reductase catalytic subunit YedY, at 3,659,917 to 3,660,930 _16190 Position (kb) 3658 3659 3660Strain fitness (log2 ratio) -2 -1 0 1 2at 3658.098 kb on + strand, within AO356_16180at 3658.098 kb on + strand, within AO356_16180at 3658.099 kb on - strand, within AO356_16180at 3658.170 kb on + strand, within AO356_16180at 3658.170 kb on + strand, within AO356_16180at 3658.170 kb on + strand, within AO356_16180at 3658.170 kb on + strand, within AO356_16180at 3658.170 kb on + strand, within AO356_16180at 3658.170 kb on + strand, within AO356_16180at 3658.171 kb on - strand, within AO356_16180at 3658.171 kb on - strand, within AO356_16180at 3658.171 kb on - strand, within AO356_16180at 3658.171 kb on - strand, within AO356_16180at 3658.291 kb on - strand, within AO356_16180at 3658.291 kb on - strand, within AO356_16180at 3658.291 kb on - strand, within AO356_16180at 3658.332 kb on + strand, within AO356_16180at 3658.332 kb on + strand, within AO356_16180at 3658.332 kb on + strand, within AO356_16180at 3658.333 kb on - strand, within AO356_16180at 3658.333 kb on - strand, within AO356_16180at 3658.358 kb on + strand, within AO356_16180at 3658.359 kb on - strand, within AO356_16180at 3658.503 kb on + strand, within AO356_16180at 3658.503 kb on + strand, within AO356_16180at 3658.503 kb on + strand, within AO356_16180at 3658.503 kb on + strand, within AO356_16180at 3658.504 kb on - strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.548 kb on + strand, within AO356_16180at 3658.549 kb on - strand, within AO356_16180at 3658.549 kb on - strand, within AO356_16180at 3658.549 kb on - strand, within AO356_16180at 3658.549 kb on - strand, within AO356_16180at 3658.549 kb on - strand, within AO356_16180at 3658.549 kb on - strand, within AO356_16180at 3658.549 kb on - strand, within AO356_16180at 3658.575 kb on + strand, within AO356_16180at 3658.575 kb on + strand, within AO356_16180at 3658.575 kb on + strand, within AO356_16180at 3658.576 kb on - strand, within AO356_16180at 3658.576 kb on - strand, within AO356_16180at 3658.608 kb on + strand, within AO356_16180at 3658.608 kb on + strand, within AO356_16180at 3658.609 kb on - strand, within AO356_16180at 3658.609 kb on - strand, within AO356_16180at 3658.609 kb on - strand, within AO356_16180at 3658.609 kb on - strand, within AO356_16180at 3658.673 kb on + strand, within AO356_16180at 3658.673 kb on + strand, within AO356_16180at 3658.673 kb on + strand, within AO356_16180at 3658.674 kb on - strand, within AO356_16180at 3658.674 kb on - strand, within AO356_16180at 3658.690 kb on - strand, within AO356_16180at 3658.690 kb on - strand, within AO356_16180at 3658.690 kb on - strand, within AO356_16180at 3658.690 kb on - strand, within AO356_16180at 3658.848 kb on + strandat 3658.848 kb on + strandat 3658.848 kb on + strandat 3658.848 kb on + strandat 3658.848 kb on + strandat 3658.848 kb on + strandat 3658.848 kb on + strandat 3658.848 kb on + strandat 3658.849 kb on - strandat 3658.849 kb on - strandat 3658.849 kb on - strandat 3658.849 kb on - strandat 3658.916 kb on + strandat 3658.916 kb on + strandat 3658.916 kb on + strandat 3658.916 kb on + strandat 3658.918 kb on + strandat 3658.918 kb on + strandat 3658.918 kb on + strandat 3658.918 kb on + strandat 3658.918 kb on + strandat 3658.919 kb on - strandat 3658.919 kb on - strandat 3658.919 kb on - strandat 3658.988 kb on + strandat 3658.989 kb on - strandat 3659.094 kb on + strand, within AO356_16185at 3659.117 kb on - strand, within AO356_16185at 3659.117 kb on - strand, within AO356_16185at 3659.117 kb on - strand, within AO356_16185at 3659.233 kb on + strand, within AO356_16185at 3659.234 kb on - strand, within AO356_16185at 3659.338 kb on + strand, within AO356_16185at 3659.339 kb on - strand, within AO356_16185at 3659.446 kb on + strand, within AO356_16185at 3659.447 kb on - strand, within AO356_16185at 3659.447 kb on - strand, within AO356_16185at 3659.447 kb on - strand, within AO356_16185at 3659.447 kb on - strand, within AO356_16185at 3659.512 kb on + strand, within AO356_16185at 3659.665 kb on + strand, within AO356_16185at 3659.665 kb on + strand, within AO356_16185at 3659.666 kb on - strand, within AO356_16185at 3659.780 kb on + strandat 3659.781 kb on - strandat 3659.815 kb on + strandat 3659.815 kb on + strandat 3659.815 kb on + strandat 3659.815 kb on + strandat 3659.851 kb on + strandat 3659.851 kb on + strandat 3659.851 kb on + strandat 3659.851 kb on + strandat 3659.852 kb on - strandat 3659.856 kb on + strandat 3659.856 kb on + strandat 3659.868 kb on + strandat 3659.869 kb on - strandat 3659.880 kb on + strandat 3659.881 kb on - strandat 3659.902 kb on + strandat 3659.902 kb on + strandat 3659.903 kb on - strandat 3659.903 kb on - strandat 3659.980 kb on + strandat 3659.980 kb on + strandat 3659.980 kb on + strandat 3659.980 kb on + strandat 3659.980 kb on + strandat 3659.980 kb on + strandat 3659.980 kb on + strandat 3659.980 kb on + strandat 3659.981 kb on - strandat 3659.981 kb on - strandat 3659.981 kb on - strandat 3659.981 kb on - strandat 3659.984 kb on + strandat 3659.984 kb on + strandat 3659.984 kb on + strandat 3659.985 kb on - strandat 3659.985 kb on - strandat 3659.985 kb on - strandat 3659.985 kb on - strandat 3659.985 kb on - strandat 3659.985 kb on - strandat 3659.985 kb on - strandat 3660.193 kb on + strand, within AO356_16190at 3660.193 kb on + strand, within AO356_16190at 3660.193 kb on + strand, within AO356_16190at 3660.194 kb on - strand, within AO356_16190at 3660.194 kb on - strand, within AO356_16190at 3660.194 kb on - strand, within AO356_16190at 3660.194 kb on - strand, within AO356_16190at 3660.205 kb on + strand, within AO356_16190at 3660.206 kb on - strand, within AO356_16190at 3660.206 kb on - strand, within AO356_16190at 3660.206 kb on - strand, within AO356_16190at 3660.206 kb on - strand, within AO356_16190at 3660.206 kb on - strand, within AO356_16190at 3660.278 kb on + strand, within AO356_16190at 3660.278 kb on + strand, within AO356_16190at 3660.310 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.460 kb on + strand, within AO356_16190at 3660.461 kb on - strand, within AO356_16190at 3660.461 kb on - strand, within AO356_16190at 3660.461 kb on - strand, within AO356_16190at 3660.461 kb on - strand, within AO356_16190at 3660.461 kb on - strand, within AO356_16190at 3660.461 kb on - strand, within AO356_16190at 3660.461 kb on - strand, within AO356_16190at 3660.538 kb on + strand, within AO356_16190at 3660.538 kb on + strand, within AO356_16190at 3660.539 kb on - strand, within AO356_16190at 3660.539 kb on - strand, within AO356_16190at 3660.539 kb on - strand, within AO356_16190at 3660.539 kb on - strand, within AO356_16190at 3660.539 kb on - strand, within AO356_16190at 3660.539 kb on - strand, within AO356_16190at 3660.539 kb on - strand, within AO356_16190at 3660.601 kb on + strand, within AO356_16190at 3660.601 kb on + strand, within AO356_16190at 3660.601 kb on + strand, within AO356_16190at 3660.602 kb on - strand, within AO356_16190at 3660.602 kb on - strand, within AO356_16190at 3660.602 kb on - strand, within AO356_16190at 3660.661 kb on + strand, within AO356_16190at 3660.661 kb on + strand, within AO356_16190at 3660.661 kb on + strand, within AO356_16190at 3660.661 kb on + strand, within AO356_16190at 3660.662 kb on - strand, within AO356_16190at 3660.662 kb on - strand, within AO356_16190at 3660.751 kb on + strand, within AO356_16190at 3660.760 kb on + strand, within AO356_16190

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,658,098 + AO356_16180 0.26 -0.3
3,658,098 + AO356_16180 0.26 +0.2
3,658,099 - AO356_16180 0.26 +0.0
3,658,170 + AO356_16180 0.33 -0.4
3,658,170 + AO356_16180 0.33 -0.3
3,658,170 + AO356_16180 0.33 -0.4
3,658,170 + AO356_16180 0.33 +0.3
3,658,170 + AO356_16180 0.33 +0.8
3,658,170 + AO356_16180 0.33 +0.8
3,658,171 - AO356_16180 0.33 -0.7
3,658,171 - AO356_16180 0.33 -1.6
3,658,171 - AO356_16180 0.33 -0.2
3,658,171 - AO356_16180 0.33 +1.8
3,658,291 - AO356_16180 0.45 +0.8
3,658,291 - AO356_16180 0.45 -1.0
3,658,291 - AO356_16180 0.45 -1.4
3,658,332 + AO356_16180 0.49 +0.9
3,658,332 + AO356_16180 0.49 +0.2
3,658,332 + AO356_16180 0.49 +1.6
3,658,333 - AO356_16180 0.49 -0.1
3,658,333 - AO356_16180 0.49 +0.3
3,658,358 + AO356_16180 0.52 +0.8
3,658,359 - AO356_16180 0.52 +0.1
3,658,503 + AO356_16180 0.66 +0.1
3,658,503 + AO356_16180 0.66 +0.8
3,658,503 + AO356_16180 0.66 +0.6
3,658,503 + AO356_16180 0.66 -0.4
3,658,504 - AO356_16180 0.66 +0.2
3,658,548 + AO356_16180 0.70 +0.9
3,658,548 + AO356_16180 0.70 +0.2
3,658,548 + AO356_16180 0.70 +0.3
3,658,548 + AO356_16180 0.70 +1.4
3,658,548 + AO356_16180 0.70 +0.4
3,658,548 + AO356_16180 0.70 +1.0
3,658,548 + AO356_16180 0.70 -0.1
3,658,548 + AO356_16180 0.70 -0.7
3,658,548 + AO356_16180 0.70 +0.9
3,658,548 + AO356_16180 0.70 -0.5
3,658,549 - AO356_16180 0.70 +0.1
3,658,549 - AO356_16180 0.70 +0.0
3,658,549 - AO356_16180 0.70 -0.2
3,658,549 - AO356_16180 0.70 -0.4
3,658,549 - AO356_16180 0.70 +0.7
3,658,549 - AO356_16180 0.70 -1.6
3,658,549 - AO356_16180 0.70 +0.1
3,658,575 + AO356_16180 0.73 +0.5
3,658,575 + AO356_16180 0.73 -0.5
3,658,575 + AO356_16180 0.73 +0.2
3,658,576 - AO356_16180 0.73 +0.7
3,658,576 - AO356_16180 0.73 +0.1
3,658,608 + AO356_16180 0.76 -0.6
3,658,608 + AO356_16180 0.76 +0.4
3,658,609 - AO356_16180 0.76 +0.0
3,658,609 - AO356_16180 0.76 -0.6
3,658,609 - AO356_16180 0.76 +0.9
3,658,609 - AO356_16180 0.76 -0.9
3,658,673 + AO356_16180 0.82 +1.1
3,658,673 + AO356_16180 0.82 +1.0
3,658,673 + AO356_16180 0.82 -0.8
3,658,674 - AO356_16180 0.83 -0.4
3,658,674 - AO356_16180 0.83 -0.6
3,658,690 - AO356_16180 0.84 -1.4
3,658,690 - AO356_16180 0.84 +1.7
3,658,690 - AO356_16180 0.84 -0.6
3,658,690 - AO356_16180 0.84 +0.6
3,658,848 + -1.7
3,658,848 + -1.6
3,658,848 + -0.0
3,658,848 + +0.8
3,658,848 + +0.4
3,658,848 + -0.9
3,658,848 + +0.4
3,658,848 + +0.3
3,658,849 - +0.7
3,658,849 - -0.6
3,658,849 - +0.3
3,658,849 - +0.9
3,658,916 + +0.4
3,658,916 + -0.1
3,658,916 + -0.3
3,658,916 + -0.8
3,658,918 + -0.4
3,658,918 + +1.0
3,658,918 + +0.1
3,658,918 + +0.8
3,658,918 + -0.8
3,658,919 - -1.4
3,658,919 - -1.0
3,658,919 - -0.3
3,658,988 + -1.9
3,658,989 - +0.4
3,659,094 + AO356_16185 0.12 -0.4
3,659,117 - AO356_16185 0.14 -2.0
3,659,117 - AO356_16185 0.14 +0.4
3,659,117 - AO356_16185 0.14 -0.4
3,659,233 + AO356_16185 0.28 -0.6
3,659,234 - AO356_16185 0.28 -1.8
3,659,338 + AO356_16185 0.40 -0.9
3,659,339 - AO356_16185 0.41 -1.6
3,659,446 + AO356_16185 0.53 -1.2
3,659,447 - AO356_16185 0.53 +1.4
3,659,447 - AO356_16185 0.53 +0.8
3,659,447 - AO356_16185 0.53 +0.0
3,659,447 - AO356_16185 0.53 -0.2
3,659,512 + AO356_16185 0.61 +2.0
3,659,665 + AO356_16185 0.79 +2.2
3,659,665 + AO356_16185 0.79 -0.6
3,659,666 - AO356_16185 0.79 -0.8
3,659,780 + +0.8
3,659,781 - -0.2
3,659,815 + -0.9
3,659,815 + -0.6
3,659,815 + +0.4
3,659,815 + -0.3
3,659,851 + +0.4
3,659,851 + +0.8
3,659,851 + -0.7
3,659,851 + +0.7
3,659,852 - +1.2
3,659,856 + -0.3
3,659,856 + +0.1
3,659,868 + +0.6
3,659,869 - +0.8
3,659,880 + +0.8
3,659,881 - +0.2
3,659,902 + -2.0
3,659,902 + +0.0
3,659,903 - +0.8
3,659,903 - -1.0
3,659,980 + +1.0
3,659,980 + -0.4
3,659,980 + +0.5
3,659,980 + +0.7
3,659,980 + +1.5
3,659,980 + -0.1
3,659,980 + -0.2
3,659,980 + +1.5
3,659,981 - -0.4
3,659,981 - -1.3
3,659,981 - -1.1
3,659,981 - +1.4
3,659,984 + +0.7
3,659,984 + +0.1
3,659,984 + -0.0
3,659,985 - +0.4
3,659,985 - +0.3
3,659,985 - -0.8
3,659,985 - -0.4
3,659,985 - +0.7
3,659,985 - -0.2
3,659,985 - +1.0
3,660,193 + AO356_16190 0.27 -2.0
3,660,193 + AO356_16190 0.27 +0.3
3,660,193 + AO356_16190 0.27 -0.5
3,660,194 - AO356_16190 0.27 +0.2
3,660,194 - AO356_16190 0.27 +0.4
3,660,194 - AO356_16190 0.27 -0.2
3,660,194 - AO356_16190 0.27 +0.0
3,660,205 + AO356_16190 0.28 -0.2
3,660,206 - AO356_16190 0.29 +0.8
3,660,206 - AO356_16190 0.29 +0.4
3,660,206 - AO356_16190 0.29 +0.2
3,660,206 - AO356_16190 0.29 +0.5
3,660,206 - AO356_16190 0.29 -0.6
3,660,278 + AO356_16190 0.36 +0.5
3,660,278 + AO356_16190 0.36 -0.2
3,660,310 + AO356_16190 0.39 +0.9
3,660,460 + AO356_16190 0.54 +1.8
3,660,460 + AO356_16190 0.54 -0.4
3,660,460 + AO356_16190 0.54 +0.4
3,660,460 + AO356_16190 0.54 -1.9
3,660,460 + AO356_16190 0.54 +0.2
3,660,460 + AO356_16190 0.54 -1.0
3,660,460 + AO356_16190 0.54 +0.1
3,660,460 + AO356_16190 0.54 +0.2
3,660,460 + AO356_16190 0.54 +1.1
3,660,461 - AO356_16190 0.54 +0.3
3,660,461 - AO356_16190 0.54 +0.3
3,660,461 - AO356_16190 0.54 -0.5
3,660,461 - AO356_16190 0.54 -0.5
3,660,461 - AO356_16190 0.54 -1.4
3,660,461 - AO356_16190 0.54 +0.1
3,660,461 - AO356_16190 0.54 -0.2
3,660,538 + AO356_16190 0.61 +0.0
3,660,538 + AO356_16190 0.61 -0.5
3,660,539 - AO356_16190 0.61 +0.9
3,660,539 - AO356_16190 0.61 +1.1
3,660,539 - AO356_16190 0.61 -0.4
3,660,539 - AO356_16190 0.61 -0.3
3,660,539 - AO356_16190 0.61 -1.3
3,660,539 - AO356_16190 0.61 -0.4
3,660,539 - AO356_16190 0.61 -1.8
3,660,601 + AO356_16190 0.67 +0.6
3,660,601 + AO356_16190 0.67 -0.6
3,660,601 + AO356_16190 0.67 +0.4
3,660,602 - AO356_16190 0.68 +0.0
3,660,602 - AO356_16190 0.68 +0.7
3,660,602 - AO356_16190 0.68 -0.3
3,660,661 + AO356_16190 0.73 +0.7
3,660,661 + AO356_16190 0.73 +0.4
3,660,661 + AO356_16190 0.73 -0.1
3,660,661 + AO356_16190 0.73 -0.9
3,660,662 - AO356_16190 0.73 +0.5
3,660,662 - AO356_16190 0.73 -0.5
3,660,751 + AO356_16190 0.82 +0.6
3,660,760 + AO356_16190 0.83 -0.5

Or see this region's nucleotide sequence