Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16095

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16090 and AO356_16095 are separated by 233 nucleotidesAO356_16095 and AO356_16100 are separated by 338 nucleotides AO356_16090: AO356_16090 - glutamyl-Q tRNA(Asp) ligase, at 3,640,624 to 3,641,505 _16090 AO356_16095: AO356_16095 - molecular chaperone DnaK, at 3,641,739 to 3,642,182 _16095 AO356_16100: AO356_16100 - aminotransferase, at 3,642,521 to 3,643,693 _16100 Position (kb) 3641 3642 3643Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3640.814 kb on + strand, within AO356_16090at 3640.815 kb on - strand, within AO356_16090at 3640.904 kb on + strand, within AO356_16090at 3640.904 kb on + strand, within AO356_16090at 3640.905 kb on - strand, within AO356_16090at 3640.905 kb on - strand, within AO356_16090at 3640.905 kb on - strand, within AO356_16090at 3640.905 kb on - strand, within AO356_16090at 3640.997 kb on + strand, within AO356_16090at 3640.997 kb on + strand, within AO356_16090at 3640.998 kb on - strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.003 kb on + strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.004 kb on - strand, within AO356_16090at 3641.093 kb on + strand, within AO356_16090at 3641.093 kb on + strand, within AO356_16090at 3641.094 kb on - strand, within AO356_16090at 3641.094 kb on - strand, within AO356_16090at 3641.180 kb on + strand, within AO356_16090at 3641.181 kb on - strand, within AO356_16090at 3641.181 kb on - strand, within AO356_16090at 3641.181 kb on - strand, within AO356_16090at 3641.216 kb on + strand, within AO356_16090at 3641.216 kb on + strand, within AO356_16090at 3641.217 kb on - strand, within AO356_16090at 3641.217 kb on - strand, within AO356_16090at 3641.312 kb on + strand, within AO356_16090at 3641.313 kb on - strand, within AO356_16090at 3641.313 kb on - strand, within AO356_16090at 3641.423 kb on + strandat 3641.423 kb on + strandat 3641.423 kb on + strandat 3641.423 kb on + strandat 3641.423 kb on + strandat 3641.423 kb on + strandat 3641.423 kb on + strandat 3641.424 kb on - strandat 3641.424 kb on - strandat 3641.424 kb on - strandat 3641.424 kb on - strandat 3641.495 kb on + strandat 3641.496 kb on - strandat 3641.496 kb on - strandat 3641.496 kb on - strandat 3641.505 kb on + strandat 3641.506 kb on - strandat 3641.560 kb on + strandat 3641.560 kb on + strandat 3641.561 kb on - strandat 3641.561 kb on - strandat 3641.561 kb on - strandat 3641.561 kb on - strandat 3641.705 kb on + strandat 3641.705 kb on + strandat 3641.705 kb on + strandat 3641.705 kb on + strandat 3641.705 kb on + strandat 3641.706 kb on - strandat 3641.706 kb on - strandat 3641.706 kb on - strandat 3641.706 kb on - strandat 3641.706 kb on - strandat 3641.706 kb on - strandat 3641.740 kb on + strandat 3641.740 kb on + strandat 3641.740 kb on + strandat 3641.863 kb on + strand, within AO356_16095at 3641.863 kb on + strand, within AO356_16095at 3641.864 kb on - strand, within AO356_16095at 3642.101 kb on + strand, within AO356_16095at 3642.101 kb on + strand, within AO356_16095at 3642.101 kb on + strand, within AO356_16095at 3642.101 kb on + strand, within AO356_16095at 3642.102 kb on - strand, within AO356_16095at 3642.102 kb on - strand, within AO356_16095at 3642.102 kb on - strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.103 kb on + strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.104 kb on - strand, within AO356_16095at 3642.128 kb on - strand, within AO356_16095at 3642.128 kb on - strand, within AO356_16095at 3642.128 kb on - strand, within AO356_16095at 3642.128 kb on - strand, within AO356_16095at 3642.128 kb on - strand, within AO356_16095at 3642.197 kb on + strandat 3642.198 kb on - strandat 3642.198 kb on - strandat 3642.198 kb on - strandat 3642.205 kb on + strandat 3642.205 kb on + strandat 3642.205 kb on + strandat 3642.272 kb on + strandat 3642.273 kb on - strandat 3642.273 kb on - strandat 3642.295 kb on + strandat 3642.332 kb on + strandat 3642.333 kb on - strandat 3642.333 kb on - strandat 3642.333 kb on - strandat 3642.333 kb on - strandat 3642.365 kb on + strandat 3642.365 kb on + strandat 3642.365 kb on + strandat 3642.365 kb on + strandat 3642.365 kb on + strandat 3642.366 kb on - strandat 3642.366 kb on - strandat 3642.366 kb on - strandat 3642.366 kb on - strandat 3642.366 kb on - strandat 3642.389 kb on - strandat 3642.487 kb on + strandat 3642.488 kb on - strandat 3642.533 kb on + strandat 3642.534 kb on - strandat 3642.534 kb on - strandat 3642.534 kb on - strandat 3642.713 kb on + strand, within AO356_16100at 3642.714 kb on - strand, within AO356_16100at 3642.714 kb on - strand, within AO356_16100at 3642.714 kb on - strand, within AO356_16100at 3642.764 kb on + strand, within AO356_16100at 3642.764 kb on + strand, within AO356_16100at 3642.764 kb on + strand, within AO356_16100at 3642.764 kb on + strand, within AO356_16100at 3642.764 kb on + strand, within AO356_16100at 3642.764 kb on + strand, within AO356_16100at 3642.765 kb on - strand, within AO356_16100at 3642.765 kb on - strand, within AO356_16100at 3642.971 kb on + strand, within AO356_16100at 3643.139 kb on + strand, within AO356_16100at 3643.139 kb on + strand, within AO356_16100at 3643.139 kb on + strand, within AO356_16100at 3643.140 kb on - strand, within AO356_16100at 3643.140 kb on - strand, within AO356_16100at 3643.140 kb on - strand, within AO356_16100at 3643.154 kb on + strand, within AO356_16100at 3643.155 kb on - strand, within AO356_16100at 3643.155 kb on - strand, within AO356_16100at 3643.155 kb on - strand, within AO356_16100at 3643.155 kb on - strand, within AO356_16100at 3643.155 kb on - strand, within AO356_16100

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,640,814 + AO356_16090 0.22 +0.3
3,640,815 - AO356_16090 0.22 +0.3
3,640,904 + AO356_16090 0.32 -0.0
3,640,904 + AO356_16090 0.32 +0.7
3,640,905 - AO356_16090 0.32 +0.4
3,640,905 - AO356_16090 0.32 +0.3
3,640,905 - AO356_16090 0.32 +0.8
3,640,905 - AO356_16090 0.32 -1.0
3,640,997 + AO356_16090 0.42 +1.8
3,640,997 + AO356_16090 0.42 -1.0
3,640,998 - AO356_16090 0.42 -0.4
3,641,003 + AO356_16090 0.43 -0.7
3,641,003 + AO356_16090 0.43 -1.2
3,641,003 + AO356_16090 0.43 +1.0
3,641,003 + AO356_16090 0.43 +0.3
3,641,003 + AO356_16090 0.43 +0.8
3,641,003 + AO356_16090 0.43 +0.4
3,641,003 + AO356_16090 0.43 -0.1
3,641,003 + AO356_16090 0.43 +0.0
3,641,003 + AO356_16090 0.43 +0.9
3,641,003 + AO356_16090 0.43 -0.6
3,641,003 + AO356_16090 0.43 -0.2
3,641,003 + AO356_16090 0.43 +0.2
3,641,004 - AO356_16090 0.43 +0.4
3,641,004 - AO356_16090 0.43 -0.9
3,641,004 - AO356_16090 0.43 +0.3
3,641,004 - AO356_16090 0.43 +0.2
3,641,004 - AO356_16090 0.43 +0.8
3,641,004 - AO356_16090 0.43 -0.4
3,641,004 - AO356_16090 0.43 +0.7
3,641,004 - AO356_16090 0.43 +0.5
3,641,093 + AO356_16090 0.53 -0.5
3,641,093 + AO356_16090 0.53 +0.0
3,641,094 - AO356_16090 0.53 +0.4
3,641,094 - AO356_16090 0.53 +0.4
3,641,180 + AO356_16090 0.63 +1.2
3,641,181 - AO356_16090 0.63 +0.3
3,641,181 - AO356_16090 0.63 -0.2
3,641,181 - AO356_16090 0.63 -0.7
3,641,216 + AO356_16090 0.67 +0.5
3,641,216 + AO356_16090 0.67 -0.7
3,641,217 - AO356_16090 0.67 +0.6
3,641,217 - AO356_16090 0.67 -0.8
3,641,312 + AO356_16090 0.78 +0.4
3,641,313 - AO356_16090 0.78 -0.6
3,641,313 - AO356_16090 0.78 +0.2
3,641,423 + +0.2
3,641,423 + -0.6
3,641,423 + +1.0
3,641,423 + -0.3
3,641,423 + +2.0
3,641,423 + +0.4
3,641,423 + -2.1
3,641,424 - +0.5
3,641,424 - -1.9
3,641,424 - -1.4
3,641,424 - +0.4
3,641,495 + -0.2
3,641,496 - +1.1
3,641,496 - -0.8
3,641,496 - -1.3
3,641,505 + -1.2
3,641,506 - +0.9
3,641,560 + +0.0
3,641,560 + +0.6
3,641,561 - -1.7
3,641,561 - +0.0
3,641,561 - +1.1
3,641,561 - +1.6
3,641,705 + -0.2
3,641,705 + +0.7
3,641,705 + +0.5
3,641,705 + -0.3
3,641,705 + -0.3
3,641,706 - -0.3
3,641,706 - -0.4
3,641,706 - -0.6
3,641,706 - +0.0
3,641,706 - +0.0
3,641,706 - +0.4
3,641,740 + -0.2
3,641,740 + +0.7
3,641,740 + +0.3
3,641,863 + AO356_16095 0.28 +0.4
3,641,863 + AO356_16095 0.28 +0.3
3,641,864 - AO356_16095 0.28 +1.1
3,642,101 + AO356_16095 0.82 +0.1
3,642,101 + AO356_16095 0.82 +1.9
3,642,101 + AO356_16095 0.82 +1.3
3,642,101 + AO356_16095 0.82 -0.4
3,642,102 - AO356_16095 0.82 -0.6
3,642,102 - AO356_16095 0.82 +3.0
3,642,102 - AO356_16095 0.82 -0.3
3,642,103 + AO356_16095 0.82 +1.4
3,642,103 + AO356_16095 0.82 +0.9
3,642,103 + AO356_16095 0.82 +1.1
3,642,103 + AO356_16095 0.82 +0.3
3,642,103 + AO356_16095 0.82 +0.6
3,642,103 + AO356_16095 0.82 +1.0
3,642,103 + AO356_16095 0.82 +1.6
3,642,103 + AO356_16095 0.82 +1.9
3,642,103 + AO356_16095 0.82 +0.6
3,642,103 + AO356_16095 0.82 +1.6
3,642,103 + AO356_16095 0.82 +3.0
3,642,103 + AO356_16095 0.82 -0.3
3,642,103 + AO356_16095 0.82 -0.7
3,642,104 - AO356_16095 0.82 +0.5
3,642,104 - AO356_16095 0.82 +0.2
3,642,104 - AO356_16095 0.82 +1.2
3,642,104 - AO356_16095 0.82 +0.4
3,642,104 - AO356_16095 0.82 -0.2
3,642,104 - AO356_16095 0.82 +0.5
3,642,104 - AO356_16095 0.82 +0.9
3,642,104 - AO356_16095 0.82 -0.6
3,642,104 - AO356_16095 0.82 +1.1
3,642,104 - AO356_16095 0.82 +0.5
3,642,128 - AO356_16095 0.88 +0.7
3,642,128 - AO356_16095 0.88 +2.0
3,642,128 - AO356_16095 0.88 +1.1
3,642,128 - AO356_16095 0.88 +0.9
3,642,128 - AO356_16095 0.88 -1.4
3,642,197 + +1.2
3,642,198 - -0.1
3,642,198 - +0.1
3,642,198 - +0.4
3,642,205 + +0.4
3,642,205 + -0.2
3,642,205 + +0.4
3,642,272 + +0.7
3,642,273 - +0.1
3,642,273 - -0.4
3,642,295 + +0.8
3,642,332 + +0.0
3,642,333 - -2.2
3,642,333 - -0.6
3,642,333 - -0.7
3,642,333 - -0.3
3,642,365 + -0.4
3,642,365 + +0.6
3,642,365 + +0.0
3,642,365 + -0.4
3,642,365 + -0.2
3,642,366 - -0.2
3,642,366 - -0.9
3,642,366 - +1.3
3,642,366 - -0.3
3,642,366 - -0.9
3,642,389 - +0.8
3,642,487 + +1.2
3,642,488 - -0.6
3,642,533 + -1.6
3,642,534 - -0.8
3,642,534 - +0.7
3,642,534 - -1.5
3,642,713 + AO356_16100 0.16 -0.4
3,642,714 - AO356_16100 0.16 -0.1
3,642,714 - AO356_16100 0.16 -0.6
3,642,714 - AO356_16100 0.16 -0.6
3,642,764 + AO356_16100 0.21 +0.5
3,642,764 + AO356_16100 0.21 +0.7
3,642,764 + AO356_16100 0.21 -0.1
3,642,764 + AO356_16100 0.21 +0.2
3,642,764 + AO356_16100 0.21 +0.1
3,642,764 + AO356_16100 0.21 -0.0
3,642,765 - AO356_16100 0.21 -0.1
3,642,765 - AO356_16100 0.21 -0.6
3,642,971 + AO356_16100 0.38 +0.3
3,643,139 + AO356_16100 0.53 +0.1
3,643,139 + AO356_16100 0.53 +1.0
3,643,139 + AO356_16100 0.53 +0.2
3,643,140 - AO356_16100 0.53 +2.1
3,643,140 - AO356_16100 0.53 +0.8
3,643,140 - AO356_16100 0.53 +0.3
3,643,154 + AO356_16100 0.54 -0.4
3,643,155 - AO356_16100 0.54 -0.4
3,643,155 - AO356_16100 0.54 +1.0
3,643,155 - AO356_16100 0.54 -0.4
3,643,155 - AO356_16100 0.54 +0.1
3,643,155 - AO356_16100 0.54 -0.2

Or see this region's nucleotide sequence