Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15920

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15910 and AO356_15915 overlap by 11 nucleotidesAO356_15915 and AO356_15920 are separated by 125 nucleotidesAO356_15920 and AO356_15925 are separated by 150 nucleotides AO356_15910: AO356_15910 - histidine kinase, at 3,602,458 to 3,604,047 _15910 AO356_15915: AO356_15915 - hypothetical protein, at 3,604,037 to 3,604,270 _15915 AO356_15920: AO356_15920 - DNA transporter, at 3,604,396 to 3,605,412 _15920 AO356_15925: AO356_15925 - ribosomal large subunit pseudouridine synthase D, at 3,605,563 to 3,606,525 _15925 Position (kb) 3604 3605 3606Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3603.591 kb on - strand, within AO356_15910at 3603.591 kb on - strand, within AO356_15910at 3603.591 kb on - strand, within AO356_15910at 3603.591 kb on - strand, within AO356_15910at 3603.591 kb on - strand, within AO356_15910at 3603.872 kb on + strand, within AO356_15910at 3603.872 kb on + strand, within AO356_15910at 3603.872 kb on + strand, within AO356_15910at 3603.872 kb on + strand, within AO356_15910at 3603.872 kb on + strand, within AO356_15910at 3603.873 kb on - strand, within AO356_15910at 3603.873 kb on - strand, within AO356_15910at 3603.969 kb on + strandat 3603.980 kb on + strandat 3603.990 kb on - strandat 3603.990 kb on - strandat 3604.086 kb on + strand, within AO356_15915at 3604.086 kb on + strand, within AO356_15915at 3604.087 kb on - strand, within AO356_15915at 3604.087 kb on - strand, within AO356_15915at 3604.087 kb on - strand, within AO356_15915at 3604.087 kb on - strand, within AO356_15915at 3604.130 kb on + strand, within AO356_15915at 3604.130 kb on + strand, within AO356_15915at 3604.131 kb on - strand, within AO356_15915at 3604.131 kb on - strand, within AO356_15915at 3604.226 kb on + strand, within AO356_15915at 3604.226 kb on + strand, within AO356_15915at 3604.227 kb on - strand, within AO356_15915at 3604.259 kb on + strandat 3604.259 kb on + strandat 3604.260 kb on - strandat 3604.273 kb on + strandat 3604.305 kb on + strandat 3604.306 kb on - strandat 3604.336 kb on + strandat 3604.336 kb on + strandat 3604.337 kb on - strandat 3604.337 kb on - strandat 3604.337 kb on - strandat 3604.380 kb on + strandat 3604.380 kb on + strandat 3604.381 kb on - strandat 3604.381 kb on - strandat 3604.421 kb on + strandat 3604.421 kb on + strandat 3604.421 kb on + strandat 3604.421 kb on + strandat 3604.422 kb on - strandat 3604.422 kb on - strandat 3604.422 kb on - strandat 3604.546 kb on + strand, within AO356_15920at 3604.546 kb on + strand, within AO356_15920at 3604.547 kb on - strand, within AO356_15920at 3604.547 kb on - strand, within AO356_15920at 3604.547 kb on - strand, within AO356_15920at 3604.547 kb on - strand, within AO356_15920at 3604.695 kb on - strand, within AO356_15920at 3604.695 kb on - strand, within AO356_15920at 3605.429 kb on - strandat 3605.464 kb on - strandat 3605.572 kb on - strandat 3605.577 kb on - strandat 3605.577 kb on - strandat 3605.577 kb on - strandat 3605.821 kb on + strand, within AO356_15925at 3605.821 kb on + strand, within AO356_15925at 3606.070 kb on + strand, within AO356_15925at 3606.070 kb on + strand, within AO356_15925at 3606.070 kb on + strand, within AO356_15925at 3606.070 kb on + strand, within AO356_15925at 3606.070 kb on + strand, within AO356_15925at 3606.070 kb on + strand, within AO356_15925at 3606.070 kb on + strand, within AO356_15925at 3606.071 kb on - strand, within AO356_15925at 3606.071 kb on - strand, within AO356_15925at 3606.071 kb on - strand, within AO356_15925at 3606.071 kb on - strand, within AO356_15925at 3606.071 kb on - strand, within AO356_15925at 3606.071 kb on - strand, within AO356_15925at 3606.071 kb on - strand, within AO356_15925at 3606.255 kb on + strand, within AO356_15925at 3606.316 kb on + strand, within AO356_15925

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,603,591 - AO356_15910 0.71 +1.1
3,603,591 - AO356_15910 0.71 +0.5
3,603,591 - AO356_15910 0.71 +1.5
3,603,591 - AO356_15910 0.71 +0.8
3,603,591 - AO356_15910 0.71 -1.2
3,603,872 + AO356_15910 0.89 +1.6
3,603,872 + AO356_15910 0.89 +0.7
3,603,872 + AO356_15910 0.89 +1.7
3,603,872 + AO356_15910 0.89 -0.3
3,603,872 + AO356_15910 0.89 -0.3
3,603,873 - AO356_15910 0.89 +0.6
3,603,873 - AO356_15910 0.89 -0.4
3,603,969 + -0.4
3,603,980 + +0.0
3,603,990 - -0.3
3,603,990 - -0.4
3,604,086 + AO356_15915 0.21 -0.7
3,604,086 + AO356_15915 0.21 -0.4
3,604,087 - AO356_15915 0.21 +1.1
3,604,087 - AO356_15915 0.21 +0.3
3,604,087 - AO356_15915 0.21 -0.3
3,604,087 - AO356_15915 0.21 +1.2
3,604,130 + AO356_15915 0.40 +0.5
3,604,130 + AO356_15915 0.40 -0.4
3,604,131 - AO356_15915 0.40 -0.7
3,604,131 - AO356_15915 0.40 -0.7
3,604,226 + AO356_15915 0.81 -0.4
3,604,226 + AO356_15915 0.81 +0.3
3,604,227 - AO356_15915 0.81 +2.4
3,604,259 + -1.4
3,604,259 + -0.5
3,604,260 - -0.9
3,604,273 + -0.2
3,604,305 + +0.1
3,604,306 - +0.8
3,604,336 + +0.3
3,604,336 + -0.5
3,604,337 - +0.0
3,604,337 - -1.2
3,604,337 - +1.2
3,604,380 + +0.9
3,604,380 + -0.3
3,604,381 - -0.6
3,604,381 - -0.0
3,604,421 + -0.3
3,604,421 + +0.1
3,604,421 + +0.3
3,604,421 + -0.6
3,604,422 - +1.1
3,604,422 - +0.4
3,604,422 - +0.4
3,604,546 + AO356_15920 0.15 +1.6
3,604,546 + AO356_15920 0.15 +0.7
3,604,547 - AO356_15920 0.15 +1.0
3,604,547 - AO356_15920 0.15 +0.3
3,604,547 - AO356_15920 0.15 +0.9
3,604,547 - AO356_15920 0.15 +0.4
3,604,695 - AO356_15920 0.29 +1.8
3,604,695 - AO356_15920 0.29 +2.2
3,605,429 - -0.0
3,605,464 - +2.4
3,605,572 - -1.7
3,605,577 - +0.9
3,605,577 - +0.4
3,605,577 - +3.0
3,605,821 + AO356_15925 0.27 +2.0
3,605,821 + AO356_15925 0.27 +0.6
3,606,070 + AO356_15925 0.53 +1.4
3,606,070 + AO356_15925 0.53 -0.2
3,606,070 + AO356_15925 0.53 +0.7
3,606,070 + AO356_15925 0.53 +0.2
3,606,070 + AO356_15925 0.53 +1.9
3,606,070 + AO356_15925 0.53 -1.8
3,606,070 + AO356_15925 0.53 +0.1
3,606,071 - AO356_15925 0.53 +0.4
3,606,071 - AO356_15925 0.53 +0.3
3,606,071 - AO356_15925 0.53 +0.7
3,606,071 - AO356_15925 0.53 +0.4
3,606,071 - AO356_15925 0.53 +0.1
3,606,071 - AO356_15925 0.53 +0.8
3,606,071 - AO356_15925 0.53 +0.9
3,606,255 + AO356_15925 0.72 +1.0
3,606,316 + AO356_15925 0.78 +0.4

Or see this region's nucleotide sequence