Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15690

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15680 and AO356_15685 are separated by 138 nucleotidesAO356_15685 and AO356_15690 are separated by 158 nucleotidesAO356_15690 and AO356_15695 are separated by 15 nucleotidesAO356_15695 and AO356_15700 are separated by 291 nucleotides AO356_15680: AO356_15680 - DNA repair protein RadA, at 3,548,718 to 3,550,085 _15680 AO356_15685: AO356_15685 - pilus assembly protein, at 3,550,224 to 3,550,580 _15685 AO356_15690: AO356_15690 - carbon starvation protein A, at 3,550,739 to 3,552,805 _15690 AO356_15695: AO356_15695 - hypothetical protein, at 3,552,821 to 3,553,018 _15695 AO356_15700: AO356_15700 - GTP-binding protein, at 3,553,310 to 3,554,278 _15700 Position (kb) 3550 3551 3552 3553Strain fitness (log2 ratio) -2 -1 0 1 2at 3549.808 kb on + strand, within AO356_15680at 3549.808 kb on + strand, within AO356_15680at 3549.809 kb on - strand, within AO356_15680at 3549.809 kb on - strand, within AO356_15680at 3550.011 kb on + strandat 3550.084 kb on - strandat 3550.109 kb on + strandat 3550.109 kb on + strandat 3550.109 kb on + strandat 3550.109 kb on + strandat 3550.109 kb on + strandat 3550.109 kb on + strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.110 kb on - strandat 3550.287 kb on + strand, within AO356_15685at 3550.325 kb on + strand, within AO356_15685at 3550.325 kb on + strand, within AO356_15685at 3550.511 kb on + strand, within AO356_15685at 3550.511 kb on + strand, within AO356_15685at 3550.511 kb on + strand, within AO356_15685at 3550.511 kb on + strand, within AO356_15685at 3550.511 kb on + strand, within AO356_15685at 3550.511 kb on + strand, within AO356_15685at 3550.512 kb on - strand, within AO356_15685at 3550.512 kb on - strand, within AO356_15685at 3550.512 kb on - strand, within AO356_15685at 3550.512 kb on - strand, within AO356_15685at 3550.512 kb on - strand, within AO356_15685at 3550.512 kb on - strand, within AO356_15685at 3550.513 kb on + strand, within AO356_15685at 3550.513 kb on + strand, within AO356_15685at 3550.513 kb on + strand, within AO356_15685at 3550.513 kb on + strand, within AO356_15685at 3550.513 kb on + strand, within AO356_15685at 3550.513 kb on + strand, within AO356_15685at 3550.513 kb on + strand, within AO356_15685at 3550.514 kb on - strand, within AO356_15685at 3550.514 kb on - strand, within AO356_15685at 3550.514 kb on - strand, within AO356_15685at 3550.514 kb on - strand, within AO356_15685at 3550.514 kb on - strand, within AO356_15685at 3550.514 kb on - strand, within AO356_15685at 3550.558 kb on - strandat 3550.558 kb on - strandat 3550.558 kb on - strandat 3550.558 kb on - strandat 3550.609 kb on + strandat 3550.609 kb on + strandat 3550.609 kb on + strandat 3550.609 kb on + strandat 3550.610 kb on - strandat 3550.610 kb on - strandat 3550.610 kb on - strandat 3550.610 kb on - strandat 3550.610 kb on - strandat 3550.610 kb on - strandat 3550.611 kb on + strandat 3550.611 kb on + strandat 3550.611 kb on + strandat 3550.611 kb on + strandat 3550.612 kb on - strandat 3550.612 kb on - strandat 3550.612 kb on - strandat 3550.667 kb on + strandat 3550.706 kb on - strandat 3550.706 kb on - strandat 3550.732 kb on + strandat 3550.734 kb on + strandat 3550.735 kb on - strandat 3550.735 kb on - strandat 3550.750 kb on + strandat 3550.750 kb on + strandat 3550.750 kb on + strandat 3550.751 kb on - strandat 3550.751 kb on - strandat 3550.751 kb on - strandat 3550.751 kb on - strandat 3550.753 kb on + strandat 3550.753 kb on + strandat 3550.753 kb on + strandat 3550.794 kb on + strandat 3550.795 kb on - strandat 3551.335 kb on - strand, within AO356_15690at 3552.333 kb on - strand, within AO356_15690at 3553.222 kb on + strandat 3553.222 kb on + strandat 3553.222 kb on + strandat 3553.228 kb on + strandat 3553.229 kb on - strandat 3553.229 kb on - strandat 3553.545 kb on - strand, within AO356_15700at 3553.545 kb on - strand, within AO356_15700at 3553.673 kb on + strand, within AO356_15700at 3553.673 kb on + strand, within AO356_15700at 3553.673 kb on + strand, within AO356_15700at 3553.673 kb on + strand, within AO356_15700at 3553.673 kb on + strand, within AO356_15700at 3553.674 kb on - strand, within AO356_15700at 3553.674 kb on - strand, within AO356_15700at 3553.674 kb on - strand, within AO356_15700at 3553.674 kb on - strand, within AO356_15700at 3553.674 kb on - strand, within AO356_15700at 3553.674 kb on - strand, within AO356_15700at 3553.675 kb on + strand, within AO356_15700at 3553.675 kb on + strand, within AO356_15700at 3553.676 kb on - strand, within AO356_15700

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,549,808 + AO356_15680 0.80 +0.3
3,549,808 + AO356_15680 0.80 -0.2
3,549,809 - AO356_15680 0.80 -0.9
3,549,809 - AO356_15680 0.80 -0.9
3,550,011 + -1.7
3,550,084 - -0.5
3,550,109 + +1.0
3,550,109 + -0.5
3,550,109 + -0.3
3,550,109 + +2.4
3,550,109 + +0.0
3,550,109 + +0.7
3,550,110 - -0.1
3,550,110 - -1.0
3,550,110 - +0.1
3,550,110 - -0.3
3,550,110 - +0.1
3,550,110 - +0.7
3,550,110 - +0.9
3,550,110 - -0.6
3,550,110 - +0.5
3,550,110 - -0.0
3,550,110 - -0.1
3,550,287 + AO356_15685 0.18 +0.7
3,550,325 + AO356_15685 0.28 +0.3
3,550,325 + AO356_15685 0.28 -0.5
3,550,511 + AO356_15685 0.80 -0.2
3,550,511 + AO356_15685 0.80 +0.0
3,550,511 + AO356_15685 0.80 +0.0
3,550,511 + AO356_15685 0.80 +0.3
3,550,511 + AO356_15685 0.80 -0.3
3,550,511 + AO356_15685 0.80 -0.2
3,550,512 - AO356_15685 0.81 -0.1
3,550,512 - AO356_15685 0.81 -0.4
3,550,512 - AO356_15685 0.81 +0.4
3,550,512 - AO356_15685 0.81 -0.6
3,550,512 - AO356_15685 0.81 +0.2
3,550,512 - AO356_15685 0.81 +0.3
3,550,513 + AO356_15685 0.81 +0.0
3,550,513 + AO356_15685 0.81 -0.7
3,550,513 + AO356_15685 0.81 +0.2
3,550,513 + AO356_15685 0.81 +2.6
3,550,513 + AO356_15685 0.81 +0.9
3,550,513 + AO356_15685 0.81 +0.2
3,550,513 + AO356_15685 0.81 -0.9
3,550,514 - AO356_15685 0.81 -0.8
3,550,514 - AO356_15685 0.81 -1.6
3,550,514 - AO356_15685 0.81 -0.2
3,550,514 - AO356_15685 0.81 -0.1
3,550,514 - AO356_15685 0.81 -0.8
3,550,514 - AO356_15685 0.81 +0.0
3,550,558 - -0.6
3,550,558 - -0.8
3,550,558 - +0.3
3,550,558 - -1.2
3,550,609 + +1.7
3,550,609 + -0.5
3,550,609 + -0.1
3,550,609 + +0.4
3,550,610 - +0.9
3,550,610 - +0.9
3,550,610 - -0.7
3,550,610 - -0.6
3,550,610 - +1.4
3,550,610 - +0.0
3,550,611 + -0.4
3,550,611 + -0.2
3,550,611 + -1.9
3,550,611 + +0.1
3,550,612 - +1.1
3,550,612 - -0.7
3,550,612 - +0.2
3,550,667 + -0.7
3,550,706 - +0.1
3,550,706 - -0.4
3,550,732 + +2.4
3,550,734 + +0.2
3,550,735 - +0.8
3,550,735 - +0.5
3,550,750 + +1.6
3,550,750 + -0.6
3,550,750 + -0.4
3,550,751 - +0.7
3,550,751 - +0.4
3,550,751 - +0.2
3,550,751 - -0.2
3,550,753 + +0.7
3,550,753 + +0.2
3,550,753 + -1.4
3,550,794 + +0.6
3,550,795 - -0.1
3,551,335 - AO356_15690 0.29 -0.2
3,552,333 - AO356_15690 0.77 -1.4
3,553,222 + -1.1
3,553,222 + -0.1
3,553,222 + -0.4
3,553,228 + +0.1
3,553,229 - -0.5
3,553,229 - -0.9
3,553,545 - AO356_15700 0.24 +0.4
3,553,545 - AO356_15700 0.24 +0.7
3,553,673 + AO356_15700 0.37 +0.6
3,553,673 + AO356_15700 0.37 +0.1
3,553,673 + AO356_15700 0.37 +1.0
3,553,673 + AO356_15700 0.37 -0.1
3,553,673 + AO356_15700 0.37 -0.1
3,553,674 - AO356_15700 0.38 +0.2
3,553,674 - AO356_15700 0.38 +0.1
3,553,674 - AO356_15700 0.38 -0.1
3,553,674 - AO356_15700 0.38 +1.2
3,553,674 - AO356_15700 0.38 +0.2
3,553,674 - AO356_15700 0.38 +0.1
3,553,675 + AO356_15700 0.38 +0.2
3,553,675 + AO356_15700 0.38 -2.4
3,553,676 - AO356_15700 0.38 +0.9

Or see this region's nucleotide sequence