Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15680 and AO356_15685 are separated by 138 nucleotides AO356_15685 and AO356_15690 are separated by 158 nucleotides AO356_15690 and AO356_15695 are separated by 15 nucleotides AO356_15695 and AO356_15700 are separated by 291 nucleotides
AO356_15680: AO356_15680 - DNA repair protein RadA, at 3,548,718 to 3,550,085
_15680
AO356_15685: AO356_15685 - pilus assembly protein, at 3,550,224 to 3,550,580
_15685
AO356_15690: AO356_15690 - carbon starvation protein A, at 3,550,739 to 3,552,805
_15690
AO356_15695: AO356_15695 - hypothetical protein, at 3,552,821 to 3,553,018
_15695
AO356_15700: AO356_15700 - GTP-binding protein, at 3,553,310 to 3,554,278
_15700
Position (kb)
3550
3551
3552
3553 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3549.808 kb on + strand, within AO356_15680 at 3549.808 kb on + strand, within AO356_15680 at 3549.809 kb on - strand, within AO356_15680 at 3549.809 kb on - strand, within AO356_15680 at 3550.011 kb on + strand at 3550.084 kb on - strand at 3550.109 kb on + strand at 3550.109 kb on + strand at 3550.109 kb on + strand at 3550.109 kb on + strand at 3550.109 kb on + strand at 3550.109 kb on + strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.110 kb on - strand at 3550.287 kb on + strand, within AO356_15685 at 3550.325 kb on + strand, within AO356_15685 at 3550.325 kb on + strand, within AO356_15685 at 3550.511 kb on + strand, within AO356_15685 at 3550.511 kb on + strand, within AO356_15685 at 3550.511 kb on + strand, within AO356_15685 at 3550.511 kb on + strand, within AO356_15685 at 3550.511 kb on + strand, within AO356_15685 at 3550.511 kb on + strand, within AO356_15685 at 3550.512 kb on - strand, within AO356_15685 at 3550.512 kb on - strand, within AO356_15685 at 3550.512 kb on - strand, within AO356_15685 at 3550.512 kb on - strand, within AO356_15685 at 3550.512 kb on - strand, within AO356_15685 at 3550.512 kb on - strand, within AO356_15685 at 3550.513 kb on + strand, within AO356_15685 at 3550.513 kb on + strand, within AO356_15685 at 3550.513 kb on + strand, within AO356_15685 at 3550.513 kb on + strand, within AO356_15685 at 3550.513 kb on + strand, within AO356_15685 at 3550.513 kb on + strand, within AO356_15685 at 3550.513 kb on + strand, within AO356_15685 at 3550.514 kb on - strand, within AO356_15685 at 3550.514 kb on - strand, within AO356_15685 at 3550.514 kb on - strand, within AO356_15685 at 3550.514 kb on - strand, within AO356_15685 at 3550.514 kb on - strand, within AO356_15685 at 3550.514 kb on - strand, within AO356_15685 at 3550.558 kb on - strand at 3550.558 kb on - strand at 3550.558 kb on - strand at 3550.558 kb on - strand at 3550.609 kb on + strand at 3550.609 kb on + strand at 3550.609 kb on + strand at 3550.609 kb on + strand at 3550.610 kb on - strand at 3550.610 kb on - strand at 3550.610 kb on - strand at 3550.610 kb on - strand at 3550.610 kb on - strand at 3550.610 kb on - strand at 3550.611 kb on + strand at 3550.611 kb on + strand at 3550.611 kb on + strand at 3550.611 kb on + strand at 3550.612 kb on - strand at 3550.612 kb on - strand at 3550.612 kb on - strand at 3550.667 kb on + strand at 3550.706 kb on - strand at 3550.706 kb on - strand at 3550.732 kb on + strand at 3550.734 kb on + strand at 3550.735 kb on - strand at 3550.735 kb on - strand at 3550.750 kb on + strand at 3550.750 kb on + strand at 3550.750 kb on + strand at 3550.751 kb on - strand at 3550.751 kb on - strand at 3550.751 kb on - strand at 3550.751 kb on - strand at 3550.753 kb on + strand at 3550.753 kb on + strand at 3550.753 kb on + strand at 3550.794 kb on + strand at 3550.795 kb on - strand at 3551.335 kb on - strand, within AO356_15690 at 3552.333 kb on - strand, within AO356_15690 at 3553.222 kb on + strand at 3553.222 kb on + strand at 3553.222 kb on + strand at 3553.228 kb on + strand at 3553.229 kb on - strand at 3553.229 kb on - strand at 3553.545 kb on - strand, within AO356_15700 at 3553.545 kb on - strand, within AO356_15700 at 3553.673 kb on + strand, within AO356_15700 at 3553.673 kb on + strand, within AO356_15700 at 3553.673 kb on + strand, within AO356_15700 at 3553.673 kb on + strand, within AO356_15700 at 3553.673 kb on + strand, within AO356_15700 at 3553.674 kb on - strand, within AO356_15700 at 3553.674 kb on - strand, within AO356_15700 at 3553.674 kb on - strand, within AO356_15700 at 3553.674 kb on - strand, within AO356_15700 at 3553.674 kb on - strand, within AO356_15700 at 3553.674 kb on - strand, within AO356_15700 at 3553.675 kb on + strand, within AO356_15700 at 3553.675 kb on + strand, within AO356_15700 at 3553.676 kb on - strand, within AO356_15700
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,549,808 + AO356_15680 0.80 +0.3 3,549,808 + AO356_15680 0.80 -0.2 3,549,809 - AO356_15680 0.80 -0.9 3,549,809 - AO356_15680 0.80 -0.9 3,550,011 + -1.7 3,550,084 - -0.5 3,550,109 + +1.0 3,550,109 + -0.5 3,550,109 + -0.3 3,550,109 + +2.4 3,550,109 + +0.0 3,550,109 + +0.7 3,550,110 - -0.1 3,550,110 - -1.0 3,550,110 - +0.1 3,550,110 - -0.3 3,550,110 - +0.1 3,550,110 - +0.7 3,550,110 - +0.9 3,550,110 - -0.6 3,550,110 - +0.5 3,550,110 - -0.0 3,550,110 - -0.1 3,550,287 + AO356_15685 0.18 +0.7 3,550,325 + AO356_15685 0.28 +0.3 3,550,325 + AO356_15685 0.28 -0.5 3,550,511 + AO356_15685 0.80 -0.2 3,550,511 + AO356_15685 0.80 +0.0 3,550,511 + AO356_15685 0.80 +0.0 3,550,511 + AO356_15685 0.80 +0.3 3,550,511 + AO356_15685 0.80 -0.3 3,550,511 + AO356_15685 0.80 -0.2 3,550,512 - AO356_15685 0.81 -0.1 3,550,512 - AO356_15685 0.81 -0.4 3,550,512 - AO356_15685 0.81 +0.4 3,550,512 - AO356_15685 0.81 -0.6 3,550,512 - AO356_15685 0.81 +0.2 3,550,512 - AO356_15685 0.81 +0.3 3,550,513 + AO356_15685 0.81 +0.0 3,550,513 + AO356_15685 0.81 -0.7 3,550,513 + AO356_15685 0.81 +0.2 3,550,513 + AO356_15685 0.81 +2.6 3,550,513 + AO356_15685 0.81 +0.9 3,550,513 + AO356_15685 0.81 +0.2 3,550,513 + AO356_15685 0.81 -0.9 3,550,514 - AO356_15685 0.81 -0.8 3,550,514 - AO356_15685 0.81 -1.6 3,550,514 - AO356_15685 0.81 -0.2 3,550,514 - AO356_15685 0.81 -0.1 3,550,514 - AO356_15685 0.81 -0.8 3,550,514 - AO356_15685 0.81 +0.0 3,550,558 - -0.6 3,550,558 - -0.8 3,550,558 - +0.3 3,550,558 - -1.2 3,550,609 + +1.7 3,550,609 + -0.5 3,550,609 + -0.1 3,550,609 + +0.4 3,550,610 - +0.9 3,550,610 - +0.9 3,550,610 - -0.7 3,550,610 - -0.6 3,550,610 - +1.4 3,550,610 - +0.0 3,550,611 + -0.4 3,550,611 + -0.2 3,550,611 + -1.9 3,550,611 + +0.1 3,550,612 - +1.1 3,550,612 - -0.7 3,550,612 - +0.2 3,550,667 + -0.7 3,550,706 - +0.1 3,550,706 - -0.4 3,550,732 + +2.4 3,550,734 + +0.2 3,550,735 - +0.8 3,550,735 - +0.5 3,550,750 + +1.6 3,550,750 + -0.6 3,550,750 + -0.4 3,550,751 - +0.7 3,550,751 - +0.4 3,550,751 - +0.2 3,550,751 - -0.2 3,550,753 + +0.7 3,550,753 + +0.2 3,550,753 + -1.4 3,550,794 + +0.6 3,550,795 - -0.1 3,551,335 - AO356_15690 0.29 -0.2 3,552,333 - AO356_15690 0.77 -1.4 3,553,222 + -1.1 3,553,222 + -0.1 3,553,222 + -0.4 3,553,228 + +0.1 3,553,229 - -0.5 3,553,229 - -0.9 3,553,545 - AO356_15700 0.24 +0.4 3,553,545 - AO356_15700 0.24 +0.7 3,553,673 + AO356_15700 0.37 +0.6 3,553,673 + AO356_15700 0.37 +0.1 3,553,673 + AO356_15700 0.37 +1.0 3,553,673 + AO356_15700 0.37 -0.1 3,553,673 + AO356_15700 0.37 -0.1 3,553,674 - AO356_15700 0.38 +0.2 3,553,674 - AO356_15700 0.38 +0.1 3,553,674 - AO356_15700 0.38 -0.1 3,553,674 - AO356_15700 0.38 +1.2 3,553,674 - AO356_15700 0.38 +0.2 3,553,674 - AO356_15700 0.38 +0.1 3,553,675 + AO356_15700 0.38 +0.2 3,553,675 + AO356_15700 0.38 -2.4 3,553,676 - AO356_15700 0.38 +0.9
Or see this region's nucleotide sequence