Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15165

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15160 and AO356_15165 are separated by 657 nucleotidesAO356_15165 and AO356_15170 are separated by 6 nucleotides AO356_15160: AO356_15160 - hypothetical protein, at 3,435,639 to 3,435,998 _15160 AO356_15165: AO356_15165 - protein cII, at 3,436,656 to 3,437,309 _15165 AO356_15170: AO356_15170 - hypothetical protein, at 3,437,316 to 3,438,443 _15170 Position (kb) 3436 3437 3438Strain fitness (log2 ratio) -2 -1 0 1at 3435.704 kb on + strand, within AO356_15160at 3435.704 kb on + strand, within AO356_15160at 3435.996 kb on + strandat 3435.996 kb on + strandat 3435.996 kb on + strandat 3435.996 kb on + strandat 3435.997 kb on - strandat 3436.022 kb on + strandat 3436.022 kb on + strandat 3436.022 kb on + strandat 3436.057 kb on - strandat 3436.110 kb on + strandat 3436.110 kb on + strandat 3436.110 kb on + strandat 3436.111 kb on - strandat 3436.111 kb on - strandat 3436.111 kb on - strandat 3436.145 kb on + strandat 3436.148 kb on + strandat 3436.148 kb on + strandat 3436.148 kb on + strandat 3436.148 kb on + strandat 3436.148 kb on + strandat 3436.149 kb on - strandat 3436.149 kb on - strandat 3436.149 kb on - strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.168 kb on + strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.169 kb on - strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.170 kb on + strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.171 kb on - strandat 3436.222 kb on + strandat 3436.323 kb on + strandat 3436.324 kb on - strandat 3436.324 kb on - strandat 3436.456 kb on + strandat 3436.457 kb on - strandat 3436.513 kb on + strandat 3436.513 kb on + strandat 3436.514 kb on - strandat 3436.517 kb on - strandat 3436.575 kb on + strandat 3436.585 kb on - strandat 3436.594 kb on + strandat 3436.594 kb on + strandat 3436.637 kb on + strandat 3436.638 kb on - strandat 3436.641 kb on + strandat 3436.850 kb on - strand, within AO356_15165at 3437.030 kb on + strand, within AO356_15165at 3437.129 kb on - strand, within AO356_15165at 3437.163 kb on - strand, within AO356_15165at 3437.231 kb on - strand, within AO356_15165at 3437.248 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,435,704 + AO356_15160 0.18 -0.6
3,435,704 + AO356_15160 0.18 -0.7
3,435,996 + -0.7
3,435,996 + -0.1
3,435,996 + -0.6
3,435,996 + -0.3
3,435,997 - +0.9
3,436,022 + +0.2
3,436,022 + +0.4
3,436,022 + +0.6
3,436,057 - +0.0
3,436,110 + +0.3
3,436,110 + -0.2
3,436,110 + -0.0
3,436,111 - -0.3
3,436,111 - +0.7
3,436,111 - -0.0
3,436,145 + +0.6
3,436,148 + +0.1
3,436,148 + +0.3
3,436,148 + +1.5
3,436,148 + +0.8
3,436,148 + -2.5
3,436,149 - +0.6
3,436,149 - +0.2
3,436,149 - -0.4
3,436,168 + +0.2
3,436,168 + +0.6
3,436,168 + +0.8
3,436,168 + +0.4
3,436,168 + +1.0
3,436,168 + -0.5
3,436,168 + +0.0
3,436,168 + -0.3
3,436,168 + +0.4
3,436,168 + -0.8
3,436,168 + -1.0
3,436,168 + -0.3
3,436,169 - +0.5
3,436,169 - +0.2
3,436,169 - +0.4
3,436,169 - -0.5
3,436,169 - -0.7
3,436,169 - -0.2
3,436,169 - +0.6
3,436,169 - -1.0
3,436,169 - -0.3
3,436,169 - -0.5
3,436,169 - +1.2
3,436,169 - +1.1
3,436,170 + +1.1
3,436,170 + +0.1
3,436,170 + +0.0
3,436,170 + +0.3
3,436,170 + +0.9
3,436,170 + +1.3
3,436,170 + +0.4
3,436,170 + +0.7
3,436,170 + +0.1
3,436,170 + -0.3
3,436,170 + -0.0
3,436,170 + +1.5
3,436,170 + -0.5
3,436,170 + -0.5
3,436,170 + -0.4
3,436,170 + -0.6
3,436,170 + -0.3
3,436,171 - +1.5
3,436,171 - +0.1
3,436,171 - +0.4
3,436,171 - +0.4
3,436,171 - -0.1
3,436,171 - -0.5
3,436,171 - +0.2
3,436,171 - +0.3
3,436,171 - +0.1
3,436,171 - +1.7
3,436,171 - -1.0
3,436,171 - +0.7
3,436,222 + -0.3
3,436,323 + +0.0
3,436,324 - -1.1
3,436,324 - -1.7
3,436,456 + +0.5
3,436,457 - -1.5
3,436,513 + -0.9
3,436,513 + +0.1
3,436,514 - +0.2
3,436,517 - +0.7
3,436,575 + -0.5
3,436,585 - -0.9
3,436,594 + +0.8
3,436,594 + +0.5
3,436,637 + -1.2
3,436,638 - -0.9
3,436,641 + +0.1
3,436,850 - AO356_15165 0.30 -1.7
3,437,030 + AO356_15165 0.57 -0.1
3,437,129 - AO356_15165 0.72 -1.3
3,437,163 - AO356_15165 0.78 -1.1
3,437,231 - AO356_15165 0.88 -0.1
3,437,248 + -1.5

Or see this region's nucleotide sequence