Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14505

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14500 and AO356_14505 are separated by 3 nucleotidesAO356_14505 and AO356_14510 are separated by 212 nucleotides AO356_14500: AO356_14500 - anhydro-N-acetylmuramic acid kinase, at 3,294,681 to 3,295,772 _14500 AO356_14505: AO356_14505 - peptidase M23, at 3,295,776 to 3,297,194 _14505 AO356_14510: AO356_14510 - tyrosine--tRNA ligase, at 3,297,407 to 3,298,606 _14510 Position (kb) 3295 3296 3297 3298Strain fitness (log2 ratio) -2 -1 0 1 2at 3294.820 kb on + strand, within AO356_14500at 3294.820 kb on + strand, within AO356_14500at 3294.820 kb on + strand, within AO356_14500at 3294.821 kb on - strand, within AO356_14500at 3294.821 kb on - strand, within AO356_14500at 3294.830 kb on + strand, within AO356_14500at 3294.990 kb on + strand, within AO356_14500at 3294.990 kb on + strand, within AO356_14500at 3294.991 kb on - strand, within AO356_14500at 3294.991 kb on - strand, within AO356_14500at 3294.991 kb on - strand, within AO356_14500at 3294.991 kb on - strand, within AO356_14500at 3295.053 kb on + strand, within AO356_14500at 3295.054 kb on - strand, within AO356_14500at 3295.191 kb on + strand, within AO356_14500at 3295.191 kb on + strand, within AO356_14500at 3295.191 kb on + strand, within AO356_14500at 3295.192 kb on - strand, within AO356_14500at 3295.192 kb on - strand, within AO356_14500at 3295.192 kb on - strand, within AO356_14500at 3295.192 kb on - strand, within AO356_14500at 3295.192 kb on - strand, within AO356_14500at 3295.257 kb on + strand, within AO356_14500at 3295.257 kb on + strand, within AO356_14500at 3295.258 kb on - strand, within AO356_14500at 3295.258 kb on - strand, within AO356_14500at 3295.258 kb on - strand, within AO356_14500at 3295.304 kb on + strand, within AO356_14500at 3295.305 kb on - strand, within AO356_14500at 3295.455 kb on - strand, within AO356_14500at 3295.548 kb on - strand, within AO356_14500at 3295.638 kb on + strand, within AO356_14500at 3295.639 kb on - strand, within AO356_14500at 3295.639 kb on - strand, within AO356_14500at 3295.672 kb on + strandat 3295.672 kb on + strandat 3295.672 kb on + strandat 3295.672 kb on + strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.673 kb on - strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.762 kb on + strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.763 kb on - strandat 3295.942 kb on + strand, within AO356_14505at 3295.985 kb on - strand, within AO356_14505at 3296.069 kb on - strand, within AO356_14505at 3296.359 kb on + strand, within AO356_14505at 3296.440 kb on + strand, within AO356_14505at 3296.590 kb on + strand, within AO356_14505at 3297.114 kb on + strandat 3297.194 kb on + strandat 3297.195 kb on - strandat 3297.195 kb on - strandat 3297.195 kb on - strandat 3297.199 kb on - strandat 3297.199 kb on - strandat 3297.199 kb on - strandat 3297.199 kb on - strandat 3297.347 kb on + strandat 3297.347 kb on + strandat 3297.347 kb on + strandat 3297.347 kb on + strandat 3297.347 kb on + strandat 3297.347 kb on + strandat 3297.366 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,294,820 + AO356_14500 0.13 +1.0
3,294,820 + AO356_14500 0.13 -0.7
3,294,820 + AO356_14500 0.13 +1.3
3,294,821 - AO356_14500 0.13 -0.1
3,294,821 - AO356_14500 0.13 -0.3
3,294,830 + AO356_14500 0.14 +0.5
3,294,990 + AO356_14500 0.28 +2.0
3,294,990 + AO356_14500 0.28 -2.1
3,294,991 - AO356_14500 0.28 +1.5
3,294,991 - AO356_14500 0.28 -0.1
3,294,991 - AO356_14500 0.28 -0.3
3,294,991 - AO356_14500 0.28 -0.1
3,295,053 + AO356_14500 0.34 -0.7
3,295,054 - AO356_14500 0.34 -0.1
3,295,191 + AO356_14500 0.47 +2.5
3,295,191 + AO356_14500 0.47 +0.3
3,295,191 + AO356_14500 0.47 +0.5
3,295,192 - AO356_14500 0.47 +0.7
3,295,192 - AO356_14500 0.47 -0.3
3,295,192 - AO356_14500 0.47 -2.2
3,295,192 - AO356_14500 0.47 +0.5
3,295,192 - AO356_14500 0.47 +0.1
3,295,257 + AO356_14500 0.53 +1.5
3,295,257 + AO356_14500 0.53 +0.5
3,295,258 - AO356_14500 0.53 -0.3
3,295,258 - AO356_14500 0.53 -0.0
3,295,258 - AO356_14500 0.53 +0.3
3,295,304 + AO356_14500 0.57 -2.0
3,295,305 - AO356_14500 0.57 +0.0
3,295,455 - AO356_14500 0.71 -0.8
3,295,548 - AO356_14500 0.79 -1.2
3,295,638 + AO356_14500 0.88 -0.1
3,295,639 - AO356_14500 0.88 -0.4
3,295,639 - AO356_14500 0.88 -0.0
3,295,672 + +0.1
3,295,672 + -0.4
3,295,672 + +0.4
3,295,672 + +0.6
3,295,673 - +0.1
3,295,673 - -0.5
3,295,673 - -0.1
3,295,673 - +0.3
3,295,673 - -0.9
3,295,673 - +0.9
3,295,673 - +0.9
3,295,673 - -0.6
3,295,673 - +0.6
3,295,673 - +0.8
3,295,762 + -0.6
3,295,762 + -0.9
3,295,762 + -0.4
3,295,762 + +0.8
3,295,762 + -0.9
3,295,762 + +0.8
3,295,762 + +0.1
3,295,762 + -1.5
3,295,762 + +0.3
3,295,763 - -0.4
3,295,763 - -0.6
3,295,763 - -0.4
3,295,763 - -0.7
3,295,763 - -0.1
3,295,763 - +0.4
3,295,763 - -0.5
3,295,763 - +0.1
3,295,763 - +0.5
3,295,942 + AO356_14505 0.12 -0.6
3,295,985 - AO356_14505 0.15 +0.9
3,296,069 - AO356_14505 0.21 -0.1
3,296,359 + AO356_14505 0.41 -1.3
3,296,440 + AO356_14505 0.47 -1.1
3,296,590 + AO356_14505 0.57 -0.8
3,297,114 + +1.5
3,297,194 + -1.3
3,297,195 - -0.9
3,297,195 - +0.1
3,297,195 - -1.2
3,297,199 - -0.5
3,297,199 - -2.2
3,297,199 - +0.3
3,297,199 - -1.8
3,297,347 + +0.1
3,297,347 + -0.8
3,297,347 + -0.1
3,297,347 + +0.3
3,297,347 + -1.6
3,297,347 + -0.3
3,297,366 + +0.5

Or see this region's nucleotide sequence