Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14105

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14100 and AO356_14105 are separated by 430 nucleotidesAO356_14105 and AO356_14110 are separated by 217 nucleotides AO356_14100: AO356_14100 - malate synthase G, at 3,200,684 to 3,202,861 _14100 AO356_14105: AO356_14105 - glycine cleavage system protein R, at 3,203,292 to 3,203,810 _14105 AO356_14110: AO356_14110 - Putative D-serine transporter (from data), at 3,204,028 to 3,204,915 _14110 Position (kb) 3203 3204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3202.373 kb on + strand, within AO356_14100at 3202.374 kb on - strand, within AO356_14100at 3202.383 kb on + strand, within AO356_14100at 3202.384 kb on - strand, within AO356_14100at 3202.384 kb on - strand, within AO356_14100at 3202.434 kb on + strand, within AO356_14100at 3202.434 kb on + strand, within AO356_14100at 3202.434 kb on + strand, within AO356_14100at 3202.446 kb on + strand, within AO356_14100at 3202.593 kb on + strand, within AO356_14100at 3202.593 kb on + strand, within AO356_14100at 3202.620 kb on + strand, within AO356_14100at 3202.621 kb on - strand, within AO356_14100at 3202.884 kb on + strandat 3202.884 kb on + strandat 3202.884 kb on + strandat 3202.884 kb on + strandat 3202.885 kb on - strandat 3202.885 kb on - strandat 3202.885 kb on - strandat 3202.885 kb on - strandat 3202.933 kb on + strandat 3202.934 kb on - strandat 3202.956 kb on + strandat 3202.956 kb on + strandat 3202.957 kb on - strandat 3202.957 kb on - strandat 3202.957 kb on - strandat 3203.025 kb on + strandat 3203.026 kb on - strandat 3203.039 kb on + strandat 3203.039 kb on + strandat 3203.040 kb on - strandat 3203.040 kb on - strandat 3203.059 kb on + strandat 3203.059 kb on + strandat 3203.060 kb on - strandat 3203.060 kb on - strandat 3203.060 kb on - strandat 3203.060 kb on - strandat 3203.060 kb on - strandat 3203.063 kb on + strandat 3203.063 kb on + strandat 3203.063 kb on + strandat 3203.063 kb on + strandat 3203.064 kb on - strandat 3203.064 kb on - strandat 3203.064 kb on - strandat 3203.064 kb on - strandat 3203.080 kb on + strandat 3203.081 kb on - strandat 3203.081 kb on - strandat 3203.083 kb on + strandat 3203.083 kb on + strandat 3203.083 kb on + strandat 3203.083 kb on + strandat 3203.083 kb on + strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.084 kb on - strandat 3203.115 kb on + strandat 3203.115 kb on + strandat 3203.115 kb on + strandat 3203.116 kb on - strandat 3203.116 kb on - strandat 3203.116 kb on - strandat 3203.116 kb on - strandat 3203.116 kb on - strandat 3203.116 kb on - strandat 3203.139 kb on + strandat 3203.140 kb on - strandat 3203.147 kb on + strandat 3203.148 kb on - strandat 3203.148 kb on - strandat 3203.202 kb on - strandat 3203.258 kb on + strandat 3203.258 kb on + strandat 3203.258 kb on + strandat 3203.259 kb on - strandat 3203.259 kb on - strandat 3203.259 kb on - strandat 3203.259 kb on - strandat 3203.259 kb on - strandat 3203.259 kb on - strandat 3203.259 kb on - strandat 3203.260 kb on + strandat 3203.260 kb on + strandat 3203.260 kb on + strandat 3203.261 kb on - strandat 3203.261 kb on - strandat 3203.261 kb on - strandat 3203.378 kb on + strand, within AO356_14105at 3203.597 kb on - strand, within AO356_14105at 3203.808 kb on + strandat 3203.808 kb on + strandat 3203.808 kb on + strandat 3203.808 kb on + strandat 3203.808 kb on + strandat 3203.808 kb on + strandat 3203.809 kb on - strandat 3203.809 kb on - strandat 3203.809 kb on - strandat 3203.809 kb on - strandat 3203.809 kb on - strandat 3204.069 kb on - strandat 3204.069 kb on - strandat 3204.069 kb on - strandat 3204.176 kb on + strand, within AO356_14110at 3204.177 kb on - strand, within AO356_14110at 3204.201 kb on - strand, within AO356_14110at 3204.373 kb on + strand, within AO356_14110at 3204.373 kb on + strand, within AO356_14110at 3204.373 kb on + strand, within AO356_14110at 3204.373 kb on + strand, within AO356_14110at 3204.373 kb on + strand, within AO356_14110at 3204.374 kb on - strand, within AO356_14110at 3204.374 kb on - strand, within AO356_14110at 3204.425 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.596 kb on + strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.597 kb on - strand, within AO356_14110at 3204.599 kb on + strand, within AO356_14110at 3204.599 kb on + strand, within AO356_14110at 3204.600 kb on - strand, within AO356_14110at 3204.647 kb on + strand, within AO356_14110at 3204.647 kb on + strand, within AO356_14110at 3204.647 kb on + strand, within AO356_14110at 3204.647 kb on + strand, within AO356_14110at 3204.647 kb on + strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110at 3204.648 kb on - strand, within AO356_14110

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,202,373 + AO356_14100 0.78 +1.7
3,202,374 - AO356_14100 0.78 +0.6
3,202,383 + AO356_14100 0.78 +0.5
3,202,384 - AO356_14100 0.78 -0.7
3,202,384 - AO356_14100 0.78 +0.7
3,202,434 + AO356_14100 0.80 +0.5
3,202,434 + AO356_14100 0.80 +1.2
3,202,434 + AO356_14100 0.80 -0.1
3,202,446 + AO356_14100 0.81 -0.5
3,202,593 + AO356_14100 0.88 +0.1
3,202,593 + AO356_14100 0.88 -0.1
3,202,620 + AO356_14100 0.89 +0.7
3,202,621 - AO356_14100 0.89 +0.6
3,202,884 + +0.8
3,202,884 + -1.7
3,202,884 + +0.3
3,202,884 + -0.2
3,202,885 - +0.1
3,202,885 - -0.2
3,202,885 - -0.7
3,202,885 - +1.8
3,202,933 + +0.5
3,202,934 - -0.4
3,202,956 + -0.0
3,202,956 + +0.4
3,202,957 - -1.0
3,202,957 - -0.2
3,202,957 - +0.3
3,203,025 + +0.2
3,203,026 - -0.5
3,203,039 + -0.9
3,203,039 + +0.5
3,203,040 - -0.3
3,203,040 - -0.8
3,203,059 + -1.7
3,203,059 + +0.3
3,203,060 - -0.0
3,203,060 - +0.3
3,203,060 - -1.3
3,203,060 - +1.2
3,203,060 - +1.0
3,203,063 + +0.6
3,203,063 + -1.1
3,203,063 + -0.4
3,203,063 + +1.5
3,203,064 - -0.1
3,203,064 - -0.1
3,203,064 - -3.0
3,203,064 - -1.3
3,203,080 + -0.5
3,203,081 - +0.0
3,203,081 - +0.9
3,203,083 + +1.1
3,203,083 + +0.5
3,203,083 + +0.7
3,203,083 + -0.2
3,203,083 + -0.7
3,203,084 - +0.3
3,203,084 - +0.2
3,203,084 - +0.7
3,203,084 - -1.4
3,203,084 - -0.4
3,203,084 - -0.3
3,203,084 - -1.2
3,203,084 - +0.2
3,203,084 - +0.2
3,203,084 - +0.6
3,203,115 + +0.4
3,203,115 + +0.0
3,203,115 + +1.5
3,203,116 - +0.3
3,203,116 - +1.1
3,203,116 - +1.1
3,203,116 - -0.3
3,203,116 - +0.2
3,203,116 - +0.6
3,203,139 + -0.5
3,203,140 - -0.2
3,203,147 + -0.3
3,203,148 - +0.6
3,203,148 - -0.2
3,203,202 - -0.8
3,203,258 + -0.1
3,203,258 + -0.6
3,203,258 + +0.4
3,203,259 - -0.2
3,203,259 - -0.3
3,203,259 - +1.1
3,203,259 - -0.2
3,203,259 - +1.0
3,203,259 - -0.5
3,203,259 - -0.4
3,203,260 + -1.4
3,203,260 + +0.2
3,203,260 + +0.7
3,203,261 - +0.7
3,203,261 - -0.1
3,203,261 - +0.1
3,203,378 + AO356_14105 0.17 +0.2
3,203,597 - AO356_14105 0.59 +1.1
3,203,808 + +1.2
3,203,808 + +1.1
3,203,808 + +0.9
3,203,808 + +0.6
3,203,808 + +0.0
3,203,808 + -0.0
3,203,809 - +0.4
3,203,809 - -0.0
3,203,809 - -1.5
3,203,809 - -0.2
3,203,809 - +0.1
3,204,069 - -0.3
3,204,069 - -0.2
3,204,069 - -0.1
3,204,176 + AO356_14110 0.17 +0.5
3,204,177 - AO356_14110 0.17 -0.6
3,204,201 - AO356_14110 0.19 +0.3
3,204,373 + AO356_14110 0.39 -0.8
3,204,373 + AO356_14110 0.39 -0.6
3,204,373 + AO356_14110 0.39 +0.8
3,204,373 + AO356_14110 0.39 +0.6
3,204,373 + AO356_14110 0.39 +0.7
3,204,374 - AO356_14110 0.39 +0.7
3,204,374 - AO356_14110 0.39 +0.1
3,204,425 + AO356_14110 0.45 +0.2
3,204,596 + AO356_14110 0.64 -0.1
3,204,596 + AO356_14110 0.64 -1.8
3,204,596 + AO356_14110 0.64 -0.2
3,204,596 + AO356_14110 0.64 +0.3
3,204,596 + AO356_14110 0.64 +0.5
3,204,596 + AO356_14110 0.64 +2.3
3,204,596 + AO356_14110 0.64 +0.5
3,204,596 + AO356_14110 0.64 +0.4
3,204,596 + AO356_14110 0.64 +0.6
3,204,596 + AO356_14110 0.64 +0.2
3,204,596 + AO356_14110 0.64 -0.6
3,204,596 + AO356_14110 0.64 +1.1
3,204,596 + AO356_14110 0.64 +0.3
3,204,596 + AO356_14110 0.64 +0.6
3,204,596 + AO356_14110 0.64 +1.7
3,204,597 - AO356_14110 0.64 +0.6
3,204,597 - AO356_14110 0.64 +0.3
3,204,597 - AO356_14110 0.64 +0.1
3,204,597 - AO356_14110 0.64 +0.4
3,204,597 - AO356_14110 0.64 +0.7
3,204,597 - AO356_14110 0.64 -0.7
3,204,597 - AO356_14110 0.64 -0.2
3,204,597 - AO356_14110 0.64 -0.2
3,204,597 - AO356_14110 0.64 -0.2
3,204,597 - AO356_14110 0.64 -0.2
3,204,597 - AO356_14110 0.64 +0.3
3,204,599 + AO356_14110 0.64 +0.2
3,204,599 + AO356_14110 0.64 -1.1
3,204,600 - AO356_14110 0.64 -0.0
3,204,647 + AO356_14110 0.70 -0.1
3,204,647 + AO356_14110 0.70 -1.6
3,204,647 + AO356_14110 0.70 +0.3
3,204,647 + AO356_14110 0.70 +0.8
3,204,647 + AO356_14110 0.70 -1.7
3,204,648 - AO356_14110 0.70 +1.2
3,204,648 - AO356_14110 0.70 -0.4
3,204,648 - AO356_14110 0.70 -1.0
3,204,648 - AO356_14110 0.70 +0.2
3,204,648 - AO356_14110 0.70 +0.2
3,204,648 - AO356_14110 0.70 +0.3
3,204,648 - AO356_14110 0.70 -1.0
3,204,648 - AO356_14110 0.70 -0.0
3,204,648 - AO356_14110 0.70 +0.4

Or see this region's nucleotide sequence