Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13445

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13435 and AO356_13440 are separated by 249 nucleotidesAO356_13440 and AO356_13445 are separated by 123 nucleotidesAO356_13445 and AO356_13450 overlap by 4 nucleotides AO356_13435: AO356_13435 - peptidase P60, at 3,046,925 to 3,047,536 _13435 AO356_13440: AO356_13440 - hypothetical protein, at 3,047,786 to 3,048,214 _13440 AO356_13445: AO356_13445 - dihydroorotase, at 3,048,338 to 3,049,609 _13445 AO356_13450: AO356_13450 - aspartate carbamoyltransferase catalytic subunit, at 3,049,606 to 3,050,610 _13450 Position (kb) 3048 3049 3050Strain fitness (log2 ratio) -2 -1 0 1 2at 3047.436 kb on + strand, within AO356_13435at 3047.436 kb on + strand, within AO356_13435at 3047.436 kb on + strand, within AO356_13435at 3047.495 kb on + strandat 3047.495 kb on + strandat 3047.495 kb on + strandat 3047.495 kb on + strandat 3047.495 kb on + strandat 3047.496 kb on - strandat 3047.496 kb on - strandat 3047.496 kb on - strandat 3047.496 kb on - strandat 3047.496 kb on - strandat 3047.496 kb on - strandat 3047.496 kb on - strandat 3047.496 kb on - strandat 3047.498 kb on + strandat 3047.499 kb on - strandat 3047.538 kb on - strandat 3047.550 kb on + strandat 3047.550 kb on + strandat 3047.550 kb on + strandat 3047.551 kb on - strandat 3047.570 kb on + strandat 3047.570 kb on + strandat 3047.572 kb on + strandat 3047.572 kb on + strandat 3047.623 kb on + strandat 3047.623 kb on + strandat 3047.623 kb on + strandat 3047.623 kb on + strandat 3047.623 kb on + strandat 3047.623 kb on + strandat 3047.623 kb on + strandat 3047.624 kb on - strandat 3047.624 kb on - strandat 3047.624 kb on - strandat 3047.624 kb on - strandat 3047.795 kb on + strandat 3047.796 kb on - strandat 3047.883 kb on - strand, within AO356_13440at 3047.883 kb on - strand, within AO356_13440at 3047.883 kb on - strand, within AO356_13440at 3047.886 kb on - strand, within AO356_13440at 3048.020 kb on + strand, within AO356_13440at 3048.020 kb on + strand, within AO356_13440at 3048.021 kb on - strand, within AO356_13440at 3048.066 kb on + strand, within AO356_13440at 3048.067 kb on - strand, within AO356_13440at 3048.067 kb on - strand, within AO356_13440at 3048.067 kb on - strand, within AO356_13440at 3048.067 kb on - strand, within AO356_13440at 3048.067 kb on - strand, within AO356_13440at 3048.077 kb on + strand, within AO356_13440at 3048.078 kb on - strand, within AO356_13440at 3048.078 kb on - strand, within AO356_13440at 3048.078 kb on - strand, within AO356_13440at 3048.078 kb on - strand, within AO356_13440at 3048.078 kb on - strand, within AO356_13440at 3048.078 kb on - strand, within AO356_13440at 3048.103 kb on + strand, within AO356_13440at 3048.103 kb on + strand, within AO356_13440at 3048.104 kb on - strand, within AO356_13440at 3048.104 kb on - strand, within AO356_13440at 3048.104 kb on - strand, within AO356_13440at 3048.107 kb on + strand, within AO356_13440at 3048.108 kb on - strand, within AO356_13440at 3048.108 kb on - strand, within AO356_13440at 3048.108 kb on - strand, within AO356_13440at 3048.146 kb on + strand, within AO356_13440at 3048.146 kb on + strand, within AO356_13440at 3048.146 kb on + strand, within AO356_13440at 3048.147 kb on - strand, within AO356_13440at 3048.147 kb on - strand, within AO356_13440at 3048.147 kb on - strand, within AO356_13440at 3048.147 kb on - strand, within AO356_13440at 3048.147 kb on - strand, within AO356_13440at 3048.147 kb on - strand, within AO356_13440at 3048.184 kb on + strandat 3048.184 kb on + strandat 3048.184 kb on + strandat 3048.184 kb on + strandat 3048.185 kb on - strandat 3048.185 kb on - strandat 3048.212 kb on + strandat 3048.213 kb on - strandat 3048.230 kb on - strandat 3048.323 kb on - strandat 3048.375 kb on + strandat 3048.832 kb on - strand, within AO356_13445at 3049.105 kb on - strand, within AO356_13445at 3049.537 kb on + strandat 3049.695 kb on - strandat 3049.695 kb on - strandat 3049.947 kb on - strand, within AO356_13450at 3049.962 kb on - strand, within AO356_13450

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,047,436 + AO356_13435 0.83 +1.2
3,047,436 + AO356_13435 0.83 -0.0
3,047,436 + AO356_13435 0.83 +0.5
3,047,495 + -0.5
3,047,495 + +0.9
3,047,495 + -0.8
3,047,495 + -0.6
3,047,495 + -1.6
3,047,496 - +2.1
3,047,496 - -0.2
3,047,496 - -0.6
3,047,496 - -1.8
3,047,496 - -0.2
3,047,496 - +0.3
3,047,496 - -0.2
3,047,496 - +0.3
3,047,498 + -0.8
3,047,499 - -0.2
3,047,538 - +0.2
3,047,550 + +0.7
3,047,550 + -0.9
3,047,550 + -0.1
3,047,551 - -0.7
3,047,570 + -0.5
3,047,570 + +0.7
3,047,572 + +1.2
3,047,572 + +0.6
3,047,623 + +0.5
3,047,623 + -0.6
3,047,623 + -0.2
3,047,623 + +0.3
3,047,623 + +0.8
3,047,623 + -1.1
3,047,623 + -0.9
3,047,624 - +0.3
3,047,624 - +1.2
3,047,624 - -1.1
3,047,624 - +0.1
3,047,795 + -0.8
3,047,796 - -0.4
3,047,883 - AO356_13440 0.23 -0.3
3,047,883 - AO356_13440 0.23 +0.3
3,047,883 - AO356_13440 0.23 -0.5
3,047,886 - AO356_13440 0.23 -0.2
3,048,020 + AO356_13440 0.55 +0.3
3,048,020 + AO356_13440 0.55 -0.3
3,048,021 - AO356_13440 0.55 +0.7
3,048,066 + AO356_13440 0.65 +0.1
3,048,067 - AO356_13440 0.66 +0.6
3,048,067 - AO356_13440 0.66 -0.2
3,048,067 - AO356_13440 0.66 +0.6
3,048,067 - AO356_13440 0.66 +0.5
3,048,067 - AO356_13440 0.66 -0.1
3,048,077 + AO356_13440 0.68 -0.3
3,048,078 - AO356_13440 0.68 +0.4
3,048,078 - AO356_13440 0.68 -1.0
3,048,078 - AO356_13440 0.68 -0.2
3,048,078 - AO356_13440 0.68 +0.8
3,048,078 - AO356_13440 0.68 -0.8
3,048,078 - AO356_13440 0.68 -2.1
3,048,103 + AO356_13440 0.74 -0.3
3,048,103 + AO356_13440 0.74 -0.7
3,048,104 - AO356_13440 0.74 +0.3
3,048,104 - AO356_13440 0.74 -0.6
3,048,104 - AO356_13440 0.74 +2.1
3,048,107 + AO356_13440 0.75 -0.1
3,048,108 - AO356_13440 0.75 -2.7
3,048,108 - AO356_13440 0.75 +0.6
3,048,108 - AO356_13440 0.75 -1.1
3,048,146 + AO356_13440 0.84 +1.0
3,048,146 + AO356_13440 0.84 -0.3
3,048,146 + AO356_13440 0.84 +0.1
3,048,147 - AO356_13440 0.84 +0.5
3,048,147 - AO356_13440 0.84 -0.9
3,048,147 - AO356_13440 0.84 -0.0
3,048,147 - AO356_13440 0.84 +0.9
3,048,147 - AO356_13440 0.84 +0.2
3,048,147 - AO356_13440 0.84 +0.0
3,048,184 + -0.5
3,048,184 + -0.0
3,048,184 + -0.5
3,048,184 + +0.3
3,048,185 - -0.6
3,048,185 - -0.4
3,048,212 + +0.7
3,048,213 - +0.1
3,048,230 - +1.0
3,048,323 - +0.1
3,048,375 + +1.5
3,048,832 - AO356_13445 0.39 +0.5
3,049,105 - AO356_13445 0.60 +1.1
3,049,537 + -0.5
3,049,695 - -0.2
3,049,695 - +0.2
3,049,947 - AO356_13450 0.34 -0.1
3,049,962 - AO356_13450 0.35 +0.2

Or see this region's nucleotide sequence