Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12640

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12630 and AO356_12635 are separated by 128 nucleotidesAO356_12635 and AO356_12640 are separated by 183 nucleotidesAO356_12640 and AO356_12645 are separated by 135 nucleotides AO356_12630: AO356_12630 - alanine racemase, at 2,877,673 to 2,878,746 _12630 AO356_12635: AO356_12635 - XRE family transcriptional regulator, at 2,878,875 to 2,879,423 _12635 AO356_12640: AO356_12640 - cytochrome C, at 2,879,607 to 2,880,029 _12640 AO356_12645: AO356_12645 - acetyl-CoA hydrolase, at 2,880,165 to 2,882,099 _12645 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -3 -2 -1 0 1at 2878.732 kb on + strandat 2878.732 kb on + strandat 2878.733 kb on - strandat 2878.733 kb on - strandat 2878.761 kb on + strandat 2878.805 kb on + strandat 2878.805 kb on + strandat 2878.805 kb on + strandat 2878.806 kb on - strandat 2878.806 kb on - strandat 2878.809 kb on + strandat 2878.809 kb on + strandat 2878.809 kb on + strandat 2878.809 kb on + strandat 2878.809 kb on + strandat 2878.810 kb on - strandat 2878.908 kb on - strandat 2878.908 kb on - strandat 2878.967 kb on + strand, within AO356_12635at 2878.967 kb on + strand, within AO356_12635at 2878.968 kb on - strand, within AO356_12635at 2878.968 kb on - strand, within AO356_12635at 2878.968 kb on - strand, within AO356_12635at 2878.968 kb on - strand, within AO356_12635at 2878.968 kb on - strand, within AO356_12635at 2879.100 kb on + strand, within AO356_12635at 2879.100 kb on + strand, within AO356_12635at 2879.100 kb on + strand, within AO356_12635at 2879.101 kb on - strand, within AO356_12635at 2879.202 kb on + strand, within AO356_12635at 2879.202 kb on + strand, within AO356_12635at 2879.202 kb on + strand, within AO356_12635at 2879.202 kb on + strand, within AO356_12635at 2879.202 kb on + strand, within AO356_12635at 2879.202 kb on + strand, within AO356_12635at 2879.202 kb on + strand, within AO356_12635at 2879.203 kb on - strand, within AO356_12635at 2879.331 kb on + strand, within AO356_12635at 2879.331 kb on + strand, within AO356_12635at 2879.331 kb on + strand, within AO356_12635at 2879.331 kb on + strand, within AO356_12635at 2879.331 kb on + strand, within AO356_12635at 2879.332 kb on - strand, within AO356_12635at 2879.332 kb on - strand, within AO356_12635at 2879.332 kb on - strand, within AO356_12635at 2879.334 kb on + strand, within AO356_12635at 2879.334 kb on + strand, within AO356_12635at 2879.335 kb on - strand, within AO356_12635at 2879.421 kb on + strandat 2879.531 kb on + strandat 2879.531 kb on + strandat 2879.532 kb on - strandat 2879.533 kb on + strandat 2879.533 kb on + strandat 2879.533 kb on + strandat 2879.533 kb on + strandat 2879.533 kb on + strandat 2879.534 kb on - strandat 2879.572 kb on + strandat 2879.590 kb on + strandat 2879.590 kb on + strandat 2879.590 kb on + strandat 2879.590 kb on + strandat 2879.591 kb on - strandat 2879.591 kb on - strandat 2879.602 kb on + strandat 2879.603 kb on - strandat 2879.603 kb on - strandat 2879.603 kb on - strandat 2879.603 kb on - strandat 2879.606 kb on + strandat 2879.741 kb on + strand, within AO356_12640at 2879.806 kb on + strand, within AO356_12640at 2879.807 kb on - strand, within AO356_12640at 2879.807 kb on - strand, within AO356_12640at 2879.961 kb on - strand, within AO356_12640at 2880.027 kb on + strandat 2880.028 kb on - strandat 2880.031 kb on - strandat 2880.031 kb on - strandat 2880.031 kb on - strandat 2880.227 kb on + strandat 2880.227 kb on + strandat 2880.227 kb on + strandat 2880.227 kb on + strandat 2880.228 kb on - strandat 2880.228 kb on - strandat 2880.228 kb on - strandat 2880.228 kb on - strandat 2880.228 kb on - strandat 2880.228 kb on - strandat 2880.327 kb on + strandat 2880.327 kb on + strandat 2880.327 kb on + strandat 2880.327 kb on + strandat 2880.327 kb on + strandat 2880.327 kb on + strandat 2880.327 kb on + strandat 2880.327 kb on + strandat 2880.328 kb on - strandat 2880.328 kb on - strandat 2880.328 kb on - strandat 2880.328 kb on - strandat 2880.328 kb on - strandat 2880.328 kb on - strandat 2880.328 kb on - strandat 2880.417 kb on + strand, within AO356_12645at 2880.432 kb on + strand, within AO356_12645at 2880.432 kb on + strand, within AO356_12645at 2880.432 kb on + strand, within AO356_12645at 2880.433 kb on - strand, within AO356_12645at 2880.433 kb on - strand, within AO356_12645at 2880.537 kb on + strand, within AO356_12645at 2880.537 kb on + strand, within AO356_12645at 2880.537 kb on + strand, within AO356_12645at 2880.537 kb on + strand, within AO356_12645at 2880.537 kb on + strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.538 kb on - strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.552 kb on + strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.553 kb on - strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.753 kb on + strand, within AO356_12645at 2880.754 kb on - strand, within AO356_12645at 2880.754 kb on - strand, within AO356_12645at 2880.754 kb on - strand, within AO356_12645at 2880.754 kb on - strand, within AO356_12645at 2880.754 kb on - strand, within AO356_12645at 2880.754 kb on - strand, within AO356_12645at 2880.754 kb on - strand, within AO356_12645at 2880.871 kb on + strand, within AO356_12645at 2880.872 kb on - strand, within AO356_12645at 2881.017 kb on - strand, within AO356_12645

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,878,732 + +0.3
2,878,732 + +0.5
2,878,733 - +0.4
2,878,733 - -0.4
2,878,761 + +0.5
2,878,805 + -1.0
2,878,805 + +0.6
2,878,805 + +0.1
2,878,806 - +0.4
2,878,806 - +0.4
2,878,809 + -0.2
2,878,809 + -0.1
2,878,809 + -0.7
2,878,809 + +0.0
2,878,809 + +0.5
2,878,810 - -0.8
2,878,908 - -0.8
2,878,908 - +0.2
2,878,967 + AO356_12635 0.17 +0.7
2,878,967 + AO356_12635 0.17 +0.6
2,878,968 - AO356_12635 0.17 +0.4
2,878,968 - AO356_12635 0.17 -0.1
2,878,968 - AO356_12635 0.17 -2.5
2,878,968 - AO356_12635 0.17 +0.6
2,878,968 - AO356_12635 0.17 +0.4
2,879,100 + AO356_12635 0.41 +0.1
2,879,100 + AO356_12635 0.41 -2.9
2,879,100 + AO356_12635 0.41 +0.4
2,879,101 - AO356_12635 0.41 -0.3
2,879,202 + AO356_12635 0.60 +1.5
2,879,202 + AO356_12635 0.60 +0.6
2,879,202 + AO356_12635 0.60 +0.0
2,879,202 + AO356_12635 0.60 -0.7
2,879,202 + AO356_12635 0.60 -0.3
2,879,202 + AO356_12635 0.60 -0.9
2,879,202 + AO356_12635 0.60 -0.8
2,879,203 - AO356_12635 0.60 -0.5
2,879,331 + AO356_12635 0.83 -0.1
2,879,331 + AO356_12635 0.83 +1.5
2,879,331 + AO356_12635 0.83 +1.5
2,879,331 + AO356_12635 0.83 -0.5
2,879,331 + AO356_12635 0.83 +0.4
2,879,332 - AO356_12635 0.83 -0.8
2,879,332 - AO356_12635 0.83 +0.5
2,879,332 - AO356_12635 0.83 +0.3
2,879,334 + AO356_12635 0.84 +0.5
2,879,334 + AO356_12635 0.84 +0.3
2,879,335 - AO356_12635 0.84 -0.5
2,879,421 + -0.5
2,879,531 + -0.5
2,879,531 + +0.1
2,879,532 - -1.3
2,879,533 + +0.5
2,879,533 + -1.1
2,879,533 + +0.5
2,879,533 + -0.0
2,879,533 + +1.0
2,879,534 - +0.8
2,879,572 + +0.2
2,879,590 + -0.3
2,879,590 + -0.2
2,879,590 + -0.4
2,879,590 + +0.4
2,879,591 - -0.2
2,879,591 - +0.2
2,879,602 + +0.3
2,879,603 - -2.6
2,879,603 - +1.1
2,879,603 - +0.3
2,879,603 - -0.5
2,879,606 + +1.4
2,879,741 + AO356_12640 0.32 -1.5
2,879,806 + AO356_12640 0.47 -0.8
2,879,807 - AO356_12640 0.47 -0.0
2,879,807 - AO356_12640 0.47 +0.2
2,879,961 - AO356_12640 0.84 -0.3
2,880,027 + -0.0
2,880,028 - +1.0
2,880,031 - -0.5
2,880,031 - -0.1
2,880,031 - +1.4
2,880,227 + -1.3
2,880,227 + -1.3
2,880,227 + -0.5
2,880,227 + +0.5
2,880,228 - -0.1
2,880,228 - +0.2
2,880,228 - -0.6
2,880,228 - -0.3
2,880,228 - +0.5
2,880,228 - +0.1
2,880,327 + -0.3
2,880,327 + -0.3
2,880,327 + -0.7
2,880,327 + -2.9
2,880,327 + +0.7
2,880,327 + -0.4
2,880,327 + +0.6
2,880,327 + +1.3
2,880,328 - -1.0
2,880,328 - -0.0
2,880,328 - +1.2
2,880,328 - +0.1
2,880,328 - +0.4
2,880,328 - -0.8
2,880,328 - -0.5
2,880,417 + AO356_12645 0.13 +0.9
2,880,432 + AO356_12645 0.14 +1.0
2,880,432 + AO356_12645 0.14 -0.3
2,880,432 + AO356_12645 0.14 -0.0
2,880,433 - AO356_12645 0.14 +1.5
2,880,433 - AO356_12645 0.14 +0.2
2,880,537 + AO356_12645 0.19 +0.5
2,880,537 + AO356_12645 0.19 -0.4
2,880,537 + AO356_12645 0.19 +0.0
2,880,537 + AO356_12645 0.19 +1.0
2,880,537 + AO356_12645 0.19 +0.5
2,880,538 - AO356_12645 0.19 +0.3
2,880,538 - AO356_12645 0.19 +0.3
2,880,538 - AO356_12645 0.19 -0.5
2,880,538 - AO356_12645 0.19 +0.1
2,880,538 - AO356_12645 0.19 -0.9
2,880,538 - AO356_12645 0.19 +1.3
2,880,538 - AO356_12645 0.19 -0.4
2,880,538 - AO356_12645 0.19 -0.0
2,880,552 + AO356_12645 0.20 +0.3
2,880,552 + AO356_12645 0.20 +0.3
2,880,552 + AO356_12645 0.20 +1.2
2,880,552 + AO356_12645 0.20 +0.1
2,880,552 + AO356_12645 0.20 -0.6
2,880,552 + AO356_12645 0.20 -0.9
2,880,552 + AO356_12645 0.20 -0.9
2,880,552 + AO356_12645 0.20 -1.0
2,880,552 + AO356_12645 0.20 -0.5
2,880,553 - AO356_12645 0.20 -1.2
2,880,553 - AO356_12645 0.20 -0.8
2,880,553 - AO356_12645 0.20 +1.3
2,880,553 - AO356_12645 0.20 +0.3
2,880,553 - AO356_12645 0.20 +0.5
2,880,553 - AO356_12645 0.20 -0.3
2,880,553 - AO356_12645 0.20 +0.3
2,880,553 - AO356_12645 0.20 -0.6
2,880,553 - AO356_12645 0.20 -0.8
2,880,553 - AO356_12645 0.20 +0.5
2,880,753 + AO356_12645 0.30 -1.3
2,880,753 + AO356_12645 0.30 -0.3
2,880,753 + AO356_12645 0.30 +0.8
2,880,753 + AO356_12645 0.30 +0.2
2,880,753 + AO356_12645 0.30 +1.0
2,880,753 + AO356_12645 0.30 -0.9
2,880,753 + AO356_12645 0.30 -0.4
2,880,753 + AO356_12645 0.30 -0.3
2,880,753 + AO356_12645 0.30 +0.1
2,880,753 + AO356_12645 0.30 +0.5
2,880,754 - AO356_12645 0.30 -0.7
2,880,754 - AO356_12645 0.30 +0.3
2,880,754 - AO356_12645 0.30 +0.4
2,880,754 - AO356_12645 0.30 +0.9
2,880,754 - AO356_12645 0.30 -0.5
2,880,754 - AO356_12645 0.30 +0.3
2,880,754 - AO356_12645 0.30 -1.1
2,880,871 + AO356_12645 0.36 -0.8
2,880,872 - AO356_12645 0.37 +1.1
2,881,017 - AO356_12645 0.44 +0.7

Or see this region's nucleotide sequence