Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12495

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12485 and AO356_12490 are separated by 167 nucleotidesAO356_12490 and AO356_12495 are separated by 10 nucleotidesAO356_12495 and AO356_12500 are separated by 275 nucleotides AO356_12485: AO356_12485 - DNA-directed RNA polymerase subunit omega, at 2,851,018 to 2,851,281 _12485 AO356_12490: AO356_12490 - guanylate kinase, at 2,851,449 to 2,852,069 _12490 AO356_12495: AO356_12495 - hypothetical protein, at 2,852,080 to 2,852,943 _12495 AO356_12500: AO356_12500 - ribonuclease PH, at 2,853,219 to 2,853,941 _12500 Position (kb) 2852 2853Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2851.101 kb on - strand, within AO356_12485at 2851.101 kb on - strand, within AO356_12485at 2851.101 kb on - strand, within AO356_12485at 2851.101 kb on - strand, within AO356_12485at 2851.101 kb on - strand, within AO356_12485at 2851.101 kb on - strand, within AO356_12485at 2851.136 kb on - strand, within AO356_12485at 2851.213 kb on - strand, within AO356_12485at 2851.253 kb on - strand, within AO356_12485at 2851.253 kb on - strand, within AO356_12485at 2851.271 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.285 kb on - strandat 2851.306 kb on - strandat 2851.306 kb on - strandat 2851.345 kb on - strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.416 kb on + strandat 2851.417 kb on - strandat 2851.417 kb on - strandat 2851.417 kb on - strandat 2851.417 kb on - strandat 2852.082 kb on - strandat 2852.082 kb on - strandat 2852.082 kb on - strandat 2852.082 kb on - strandat 2852.082 kb on - strandat 2852.082 kb on - strandat 2852.082 kb on - strandat 2852.181 kb on + strand, within AO356_12495at 2852.181 kb on + strand, within AO356_12495at 2852.181 kb on + strand, within AO356_12495at 2852.181 kb on + strand, within AO356_12495at 2852.181 kb on + strand, within AO356_12495at 2852.182 kb on - strand, within AO356_12495at 2852.182 kb on - strand, within AO356_12495at 2852.182 kb on - strand, within AO356_12495at 2852.371 kb on - strand, within AO356_12495at 2852.440 kb on - strand, within AO356_12495at 2852.853 kb on - strand, within AO356_12495at 2852.999 kb on - strandat 2852.999 kb on - strandat 2852.999 kb on - strandat 2852.999 kb on - strandat 2853.003 kb on - strandat 2853.035 kb on + strandat 2853.035 kb on + strandat 2853.035 kb on + strandat 2853.035 kb on + strandat 2853.036 kb on - strandat 2853.036 kb on - strandat 2853.036 kb on - strandat 2853.036 kb on - strandat 2853.150 kb on - strandat 2853.150 kb on - strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.177 kb on - strandat 2853.177 kb on - strandat 2853.178 kb on + strandat 2853.179 kb on - strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.206 kb on - strandat 2853.206 kb on - strandat 2853.206 kb on - strandat 2853.218 kb on + strandat 2853.218 kb on + strandat 2853.219 kb on - strandat 2853.219 kb on - strandat 2853.270 kb on - strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.304 kb on + strand, within AO356_12500at 2853.305 kb on - strand, within AO356_12500at 2853.305 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.408 kb on + strand, within AO356_12500at 2853.409 kb on - strand, within AO356_12500at 2853.479 kb on + strand, within AO356_12500at 2853.479 kb on + strand, within AO356_12500at 2853.479 kb on + strand, within AO356_12500at 2853.558 kb on + strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.753 kb on + strand, within AO356_12500at 2853.753 kb on + strand, within AO356_12500at 2853.753 kb on + strand, within AO356_12500at 2853.754 kb on - strand, within AO356_12500at 2853.754 kb on - strand, within AO356_12500at 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.873 kb on - strandat 2853.873 kb on - strandat 2853.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,851,101 - AO356_12485 0.31 +1.3
2,851,101 - AO356_12485 0.31 +1.4
2,851,101 - AO356_12485 0.31 -0.6
2,851,101 - AO356_12485 0.31 +0.9
2,851,101 - AO356_12485 0.31 +0.0
2,851,101 - AO356_12485 0.31 +0.7
2,851,136 - AO356_12485 0.45 +0.2
2,851,213 - AO356_12485 0.74 +0.3
2,851,253 - AO356_12485 0.89 +0.4
2,851,253 - AO356_12485 0.89 -1.6
2,851,271 - -0.7
2,851,285 - -0.3
2,851,285 - -0.5
2,851,285 - -0.3
2,851,285 - -1.0
2,851,285 - -0.9
2,851,285 - -1.3
2,851,285 - -0.2
2,851,285 - +0.1
2,851,285 - -2.0
2,851,306 - -0.4
2,851,306 - -0.7
2,851,345 - -0.6
2,851,416 + +0.7
2,851,416 + -0.1
2,851,416 + -0.3
2,851,416 + -0.8
2,851,416 + -0.0
2,851,416 + -0.5
2,851,416 + -0.5
2,851,416 + +0.2
2,851,416 + -1.1
2,851,416 + +0.1
2,851,416 + +0.0
2,851,416 + -0.1
2,851,416 + -0.8
2,851,416 + -0.2
2,851,417 - -0.3
2,851,417 - -0.8
2,851,417 - +0.3
2,851,417 - +0.5
2,852,082 - +0.5
2,852,082 - +0.0
2,852,082 - +0.0
2,852,082 - -0.5
2,852,082 - +0.7
2,852,082 - +0.1
2,852,082 - +1.1
2,852,181 + AO356_12495 0.12 -1.0
2,852,181 + AO356_12495 0.12 +1.8
2,852,181 + AO356_12495 0.12 +0.4
2,852,181 + AO356_12495 0.12 +1.1
2,852,181 + AO356_12495 0.12 +1.3
2,852,182 - AO356_12495 0.12 +0.5
2,852,182 - AO356_12495 0.12 +0.7
2,852,182 - AO356_12495 0.12 +0.3
2,852,371 - AO356_12495 0.34 +0.3
2,852,440 - AO356_12495 0.42 +0.3
2,852,853 - AO356_12495 0.89 +0.3
2,852,999 - -0.0
2,852,999 - +0.3
2,852,999 - +1.0
2,852,999 - +0.8
2,853,003 - +0.3
2,853,035 + +0.9
2,853,035 + +1.0
2,853,035 + -0.4
2,853,035 + +1.5
2,853,036 - +0.8
2,853,036 - +0.2
2,853,036 - -0.3
2,853,036 - -0.3
2,853,150 - +0.3
2,853,150 - -0.9
2,853,176 + -0.0
2,853,176 + -1.1
2,853,176 + +0.0
2,853,176 + +0.2
2,853,176 + +0.5
2,853,176 + +0.7
2,853,177 - -1.5
2,853,177 - +0.7
2,853,178 + +0.5
2,853,179 - +0.0
2,853,205 + +0.4
2,853,205 + +0.1
2,853,205 + +1.2
2,853,205 + +0.9
2,853,205 + +1.5
2,853,205 + +0.5
2,853,205 + -0.6
2,853,205 + +0.1
2,853,205 + +0.1
2,853,206 - -0.3
2,853,206 - -0.8
2,853,206 - +0.1
2,853,218 + -0.8
2,853,218 + +2.0
2,853,219 - +0.5
2,853,219 - -0.2
2,853,270 - +1.0
2,853,279 + +1.5
2,853,279 + +1.1
2,853,279 + +1.2
2,853,279 + +1.8
2,853,279 + -0.4
2,853,279 + -0.0
2,853,280 - +0.1
2,853,280 - +1.0
2,853,280 - +0.4
2,853,280 - +1.1
2,853,280 - +0.5
2,853,304 + AO356_12500 0.12 +1.5
2,853,305 - AO356_12500 0.12 +0.4
2,853,305 - AO356_12500 0.12 +1.0
2,853,324 - AO356_12500 0.15 -0.5
2,853,324 - AO356_12500 0.15 +0.2
2,853,324 - AO356_12500 0.15 +0.1
2,853,324 - AO356_12500 0.15 +1.1
2,853,324 - AO356_12500 0.15 +1.1
2,853,408 + AO356_12500 0.26 +1.4
2,853,409 - AO356_12500 0.26 -0.0
2,853,479 + AO356_12500 0.36 +0.5
2,853,479 + AO356_12500 0.36 -0.5
2,853,479 + AO356_12500 0.36 -1.2
2,853,558 + AO356_12500 0.47 +0.7
2,853,559 - AO356_12500 0.47 -1.1
2,853,559 - AO356_12500 0.47 +0.5
2,853,559 - AO356_12500 0.47 +1.0
2,853,559 - AO356_12500 0.47 +2.1
2,853,559 - AO356_12500 0.47 +1.0
2,853,559 - AO356_12500 0.47 +1.5
2,853,559 - AO356_12500 0.47 +0.1
2,853,559 - AO356_12500 0.47 +0.2
2,853,723 + AO356_12500 0.70 +0.5
2,853,723 + AO356_12500 0.70 -0.3
2,853,723 + AO356_12500 0.70 +1.0
2,853,723 + AO356_12500 0.70 +0.5
2,853,723 + AO356_12500 0.70 +0.3
2,853,723 + AO356_12500 0.70 -0.7
2,853,723 + AO356_12500 0.70 -1.0
2,853,723 + AO356_12500 0.70 -1.0
2,853,723 + AO356_12500 0.70 +0.2
2,853,723 + AO356_12500 0.70 +0.7
2,853,723 + AO356_12500 0.70 +0.5
2,853,724 - AO356_12500 0.70 +0.3
2,853,724 - AO356_12500 0.70 +1.2
2,853,724 - AO356_12500 0.70 +1.1
2,853,724 - AO356_12500 0.70 +1.8
2,853,724 - AO356_12500 0.70 +2.5
2,853,724 - AO356_12500 0.70 -0.0
2,853,724 - AO356_12500 0.70 +0.7
2,853,724 - AO356_12500 0.70 +0.1
2,853,724 - AO356_12500 0.70 +0.5
2,853,724 - AO356_12500 0.70 +0.7
2,853,724 - AO356_12500 0.70 +0.1
2,853,724 - AO356_12500 0.70 +0.9
2,853,724 - AO356_12500 0.70 +0.4
2,853,724 - AO356_12500 0.70 +2.8
2,853,724 - AO356_12500 0.70 +1.2
2,853,724 - AO356_12500 0.70 +1.1
2,853,753 + AO356_12500 0.74 +0.1
2,853,753 + AO356_12500 0.74 +0.3
2,853,753 + AO356_12500 0.74 +1.1
2,853,754 - AO356_12500 0.74 +0.8
2,853,754 - AO356_12500 0.74 +1.8
2,853,872 + +0.5
2,853,872 + +1.6
2,853,872 + +0.1
2,853,872 + +1.4
2,853,872 + +0.0
2,853,873 - -0.3
2,853,873 - +1.7
2,853,873 - +0.6

Or see this region's nucleotide sequence