Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11495

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11485 and AO356_11490 overlap by 1 nucleotidesAO356_11490 and AO356_11495 overlap by 8 nucleotidesAO356_11495 and AO356_11500 are separated by 37 nucleotidesAO356_11500 and AO356_11505 are separated by 169 nucleotides AO356_11485: AO356_11485 - Fur family transcriptional regulator, at 2,605,165 to 2,605,647 _11485 AO356_11490: AO356_11490 - zinc ABC transporter ATP-binding protein, at 2,605,647 to 2,606,429 _11490 AO356_11495: AO356_11495 - hypothetical protein, at 2,606,422 to 2,607,210 _11495 AO356_11500: AO356_11500 - hypothetical protein, at 2,607,248 to 2,607,961 _11500 AO356_11505: AO356_11505 - hydroperoxidase, at 2,608,131 to 2,610,269 _11505 Position (kb) 2606 2607 2608Strain fitness (log2 ratio) -2 -1 0 1at 2605.860 kb on + strand, within AO356_11490at 2605.860 kb on + strand, within AO356_11490at 2605.860 kb on + strand, within AO356_11490at 2605.860 kb on + strand, within AO356_11490at 2605.860 kb on + strand, within AO356_11490at 2605.861 kb on - strand, within AO356_11490at 2605.861 kb on - strand, within AO356_11490at 2605.861 kb on - strand, within AO356_11490at 2606.127 kb on + strand, within AO356_11490at 2606.127 kb on + strand, within AO356_11490at 2606.127 kb on + strand, within AO356_11490at 2606.127 kb on + strand, within AO356_11490at 2606.127 kb on + strand, within AO356_11490at 2606.127 kb on + strand, within AO356_11490at 2606.127 kb on + strand, within AO356_11490at 2606.128 kb on - strand, within AO356_11490at 2606.128 kb on - strand, within AO356_11490at 2606.128 kb on - strand, within AO356_11490at 2606.328 kb on + strand, within AO356_11490at 2606.328 kb on + strand, within AO356_11490at 2606.329 kb on - strand, within AO356_11490at 2606.329 kb on - strand, within AO356_11490at 2606.329 kb on - strand, within AO356_11490at 2606.329 kb on - strand, within AO356_11490at 2606.440 kb on + strandat 2606.440 kb on + strandat 2606.440 kb on + strandat 2606.440 kb on + strandat 2606.440 kb on + strandat 2606.440 kb on + strandat 2606.440 kb on + strandat 2606.440 kb on + strandat 2606.441 kb on - strandat 2606.441 kb on - strandat 2606.441 kb on - strandat 2606.441 kb on - strandat 2606.441 kb on - strandat 2606.518 kb on + strand, within AO356_11495at 2606.761 kb on + strand, within AO356_11495at 2606.761 kb on + strand, within AO356_11495at 2606.762 kb on - strand, within AO356_11495at 2606.762 kb on - strand, within AO356_11495at 2606.762 kb on - strand, within AO356_11495at 2606.762 kb on - strand, within AO356_11495at 2606.821 kb on - strand, within AO356_11495at 2606.915 kb on + strand, within AO356_11495at 2606.997 kb on + strand, within AO356_11495at 2606.997 kb on + strand, within AO356_11495at 2606.997 kb on + strand, within AO356_11495at 2606.997 kb on + strand, within AO356_11495at 2606.997 kb on + strand, within AO356_11495at 2606.997 kb on + strand, within AO356_11495at 2606.997 kb on + strand, within AO356_11495at 2606.998 kb on - strand, within AO356_11495at 2606.998 kb on - strand, within AO356_11495at 2606.998 kb on - strand, within AO356_11495at 2606.998 kb on - strand, within AO356_11495at 2607.208 kb on + strandat 2607.233 kb on + strandat 2607.234 kb on - strandat 2607.234 kb on - strandat 2607.316 kb on + strandat 2607.317 kb on - strandat 2607.317 kb on - strandat 2607.464 kb on + strand, within AO356_11500at 2607.465 kb on - strand, within AO356_11500at 2607.488 kb on + strand, within AO356_11500at 2607.488 kb on + strand, within AO356_11500at 2607.488 kb on + strand, within AO356_11500at 2607.488 kb on + strand, within AO356_11500at 2607.488 kb on + strand, within AO356_11500at 2607.488 kb on + strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.489 kb on - strand, within AO356_11500at 2607.528 kb on + strand, within AO356_11500at 2607.528 kb on + strand, within AO356_11500at 2607.529 kb on - strand, within AO356_11500at 2607.741 kb on + strand, within AO356_11500at 2607.741 kb on + strand, within AO356_11500at 2607.791 kb on + strand, within AO356_11500at 2607.791 kb on + strand, within AO356_11500at 2607.792 kb on - strand, within AO356_11500at 2607.804 kb on + strand, within AO356_11500at 2607.804 kb on + strand, within AO356_11500at 2607.804 kb on + strand, within AO356_11500at 2607.805 kb on - strand, within AO356_11500at 2607.805 kb on - strand, within AO356_11500at 2607.805 kb on - strand, within AO356_11500at 2607.960 kb on - strandat 2608.037 kb on + strandat 2608.037 kb on + strandat 2608.037 kb on + strandat 2608.037 kb on + strandat 2608.038 kb on - strandat 2608.038 kb on - strandat 2608.038 kb on - strandat 2608.038 kb on - strandat 2608.038 kb on - strandat 2608.038 kb on - strandat 2608.045 kb on + strandat 2608.045 kb on + strandat 2608.045 kb on + strandat 2608.045 kb on + strandat 2608.045 kb on + strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.046 kb on - strandat 2608.154 kb on + strandat 2608.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,605,860 + AO356_11490 0.27 -1.1
2,605,860 + AO356_11490 0.27 +0.4
2,605,860 + AO356_11490 0.27 +0.6
2,605,860 + AO356_11490 0.27 -0.1
2,605,860 + AO356_11490 0.27 -0.7
2,605,861 - AO356_11490 0.27 +0.8
2,605,861 - AO356_11490 0.27 +1.1
2,605,861 - AO356_11490 0.27 -0.4
2,606,127 + AO356_11490 0.61 +0.3
2,606,127 + AO356_11490 0.61 -0.1
2,606,127 + AO356_11490 0.61 -0.2
2,606,127 + AO356_11490 0.61 -2.2
2,606,127 + AO356_11490 0.61 -0.4
2,606,127 + AO356_11490 0.61 +0.1
2,606,127 + AO356_11490 0.61 -1.2
2,606,128 - AO356_11490 0.61 -0.1
2,606,128 - AO356_11490 0.61 +0.2
2,606,128 - AO356_11490 0.61 +1.6
2,606,328 + AO356_11490 0.87 -0.4
2,606,328 + AO356_11490 0.87 +0.3
2,606,329 - AO356_11490 0.87 -0.9
2,606,329 - AO356_11490 0.87 -0.3
2,606,329 - AO356_11490 0.87 +0.4
2,606,329 - AO356_11490 0.87 +0.6
2,606,440 + -0.3
2,606,440 + -0.9
2,606,440 + -0.9
2,606,440 + +0.8
2,606,440 + -0.1
2,606,440 + -0.7
2,606,440 + -0.7
2,606,440 + -0.2
2,606,441 - -1.5
2,606,441 - -0.9
2,606,441 - -1.1
2,606,441 - -0.3
2,606,441 - -0.6
2,606,518 + AO356_11495 0.12 -2.5
2,606,761 + AO356_11495 0.43 -0.8
2,606,761 + AO356_11495 0.43 -0.5
2,606,762 - AO356_11495 0.43 -1.2
2,606,762 - AO356_11495 0.43 +0.1
2,606,762 - AO356_11495 0.43 -1.2
2,606,762 - AO356_11495 0.43 -1.1
2,606,821 - AO356_11495 0.51 -0.6
2,606,915 + AO356_11495 0.62 -1.1
2,606,997 + AO356_11495 0.73 -0.6
2,606,997 + AO356_11495 0.73 +0.7
2,606,997 + AO356_11495 0.73 -0.6
2,606,997 + AO356_11495 0.73 +1.0
2,606,997 + AO356_11495 0.73 -0.1
2,606,997 + AO356_11495 0.73 -1.1
2,606,997 + AO356_11495 0.73 -1.3
2,606,998 - AO356_11495 0.73 +0.4
2,606,998 - AO356_11495 0.73 -0.4
2,606,998 - AO356_11495 0.73 -1.1
2,606,998 - AO356_11495 0.73 +0.7
2,607,208 + -0.3
2,607,233 + -0.0
2,607,234 - +0.0
2,607,234 - +0.6
2,607,316 + -0.0
2,607,317 - +0.1
2,607,317 - +0.9
2,607,464 + AO356_11500 0.30 +0.5
2,607,465 - AO356_11500 0.30 +0.4
2,607,488 + AO356_11500 0.34 +1.1
2,607,488 + AO356_11500 0.34 +0.8
2,607,488 + AO356_11500 0.34 +0.1
2,607,488 + AO356_11500 0.34 -2.2
2,607,488 + AO356_11500 0.34 -0.4
2,607,488 + AO356_11500 0.34 +1.4
2,607,489 - AO356_11500 0.34 +0.7
2,607,489 - AO356_11500 0.34 -0.5
2,607,489 - AO356_11500 0.34 -0.2
2,607,489 - AO356_11500 0.34 -0.0
2,607,489 - AO356_11500 0.34 -0.0
2,607,489 - AO356_11500 0.34 -0.8
2,607,489 - AO356_11500 0.34 -0.1
2,607,489 - AO356_11500 0.34 -0.2
2,607,489 - AO356_11500 0.34 +0.1
2,607,528 + AO356_11500 0.39 +0.9
2,607,528 + AO356_11500 0.39 -0.1
2,607,529 - AO356_11500 0.39 -0.4
2,607,741 + AO356_11500 0.69 +0.2
2,607,741 + AO356_11500 0.69 +0.8
2,607,791 + AO356_11500 0.76 -0.7
2,607,791 + AO356_11500 0.76 -0.1
2,607,792 - AO356_11500 0.76 -0.2
2,607,804 + AO356_11500 0.78 -0.0
2,607,804 + AO356_11500 0.78 +0.6
2,607,804 + AO356_11500 0.78 -1.1
2,607,805 - AO356_11500 0.78 -0.0
2,607,805 - AO356_11500 0.78 +1.3
2,607,805 - AO356_11500 0.78 -0.9
2,607,960 - +0.4
2,608,037 + +0.9
2,608,037 + -1.4
2,608,037 + +0.6
2,608,037 + +0.1
2,608,038 - +0.1
2,608,038 - -0.4
2,608,038 - -0.2
2,608,038 - -0.0
2,608,038 - -0.1
2,608,038 - +0.9
2,608,045 + -1.7
2,608,045 + +0.5
2,608,045 + +0.6
2,608,045 + +1.4
2,608,045 + -0.4
2,608,046 - +0.6
2,608,046 - +0.5
2,608,046 - +0.2
2,608,046 - +1.7
2,608,046 - -0.0
2,608,046 - +0.1
2,608,046 - +0.2
2,608,046 - +1.2
2,608,046 - +0.2
2,608,154 + -0.0
2,608,155 - -0.2

Or see this region's nucleotide sequence