Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11090

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11085 and AO356_11090 are separated by 180 nucleotidesAO356_11090 and AO356_11095 are separated by 487 nucleotides AO356_11085: AO356_11085 - LysR family transcriptional regulator, at 2,517,009 to 2,517,926 _11085 AO356_11090: AO356_11090 - aspartate ammonia-lyase, at 2,518,107 to 2,519,531 _11090 AO356_11095: AO356_11095 - sodium:alanine symporter, at 2,520,019 to 2,521,470 _11095 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2517.174 kb on + strand, within AO356_11085at 2517.328 kb on + strand, within AO356_11085at 2517.329 kb on - strand, within AO356_11085at 2517.478 kb on + strand, within AO356_11085at 2517.478 kb on + strand, within AO356_11085at 2517.478 kb on + strand, within AO356_11085at 2517.478 kb on + strand, within AO356_11085at 2517.478 kb on + strand, within AO356_11085at 2517.479 kb on - strand, within AO356_11085at 2517.479 kb on - strand, within AO356_11085at 2517.479 kb on - strand, within AO356_11085at 2517.479 kb on - strand, within AO356_11085at 2517.479 kb on - strand, within AO356_11085at 2517.479 kb on - strand, within AO356_11085at 2517.479 kb on - strand, within AO356_11085at 2517.713 kb on + strand, within AO356_11085at 2517.713 kb on + strand, within AO356_11085at 2517.713 kb on + strand, within AO356_11085at 2517.714 kb on - strand, within AO356_11085at 2517.714 kb on - strand, within AO356_11085at 2517.765 kb on - strand, within AO356_11085at 2517.765 kb on - strand, within AO356_11085at 2517.940 kb on - strandat 2518.004 kb on - strandat 2518.010 kb on - strandat 2518.163 kb on - strandat 2518.163 kb on - strandat 2518.176 kb on + strandat 2518.176 kb on + strandat 2518.176 kb on + strandat 2518.177 kb on - strandat 2518.177 kb on - strandat 2518.177 kb on - strandat 2518.177 kb on - strandat 2518.177 kb on - strandat 2518.177 kb on - strandat 2518.177 kb on - strandat 2518.177 kb on - strandat 2518.179 kb on + strandat 2518.179 kb on + strandat 2518.180 kb on - strandat 2518.195 kb on + strandat 2518.196 kb on - strandat 2518.196 kb on - strandat 2518.242 kb on + strandat 2518.243 kb on - strandat 2518.495 kb on - strand, within AO356_11090at 2518.500 kb on + strand, within AO356_11090at 2518.501 kb on - strand, within AO356_11090at 2518.501 kb on - strand, within AO356_11090at 2519.222 kb on + strand, within AO356_11090at 2519.223 kb on - strand, within AO356_11090at 2519.364 kb on + strand, within AO356_11090at 2519.364 kb on + strand, within AO356_11090at 2519.365 kb on - strand, within AO356_11090at 2519.566 kb on - strandat 2519.618 kb on - strandat 2519.624 kb on + strandat 2519.624 kb on + strandat 2519.694 kb on + strandat 2519.748 kb on - strandat 2519.748 kb on - strandat 2519.748 kb on - strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.817 kb on + strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.818 kb on - strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.821 kb on + strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.822 kb on - strandat 2519.823 kb on + strandat 2519.823 kb on + strandat 2519.823 kb on + strandat 2519.823 kb on + strandat 2519.824 kb on - strandat 2519.824 kb on - strandat 2519.824 kb on - strandat 2519.824 kb on - strandat 2519.824 kb on - strandat 2519.824 kb on - strandat 2519.869 kb on + strandat 2519.869 kb on + strandat 2519.869 kb on + strandat 2519.869 kb on + strandat 2519.870 kb on - strandat 2519.870 kb on - strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.889 kb on + strandat 2519.890 kb on - strandat 2519.890 kb on - strandat 2519.890 kb on - strandat 2519.890 kb on - strandat 2519.892 kb on + strandat 2519.892 kb on + strandat 2519.893 kb on - strandat 2519.893 kb on - strandat 2519.893 kb on - strandat 2519.893 kb on - strandat 2519.961 kb on - strandat 2519.969 kb on - strandat 2519.993 kb on + strandat 2519.994 kb on - strandat 2519.994 kb on - strandat 2520.014 kb on + strandat 2520.014 kb on + strandat 2520.014 kb on + strandat 2520.014 kb on + strandat 2520.014 kb on + strandat 2520.015 kb on - strandat 2520.015 kb on - strandat 2520.015 kb on - strandat 2520.015 kb on - strandat 2520.015 kb on - strandat 2520.015 kb on - strandat 2520.044 kb on + strandat 2520.044 kb on + strandat 2520.044 kb on + strandat 2520.045 kb on - strandat 2520.045 kb on - strandat 2520.045 kb on - strandat 2520.088 kb on + strandat 2520.088 kb on + strandat 2520.089 kb on - strandat 2520.315 kb on + strand, within AO356_11095at 2520.315 kb on + strand, within AO356_11095at 2520.316 kb on - strand, within AO356_11095at 2520.316 kb on - strand, within AO356_11095at 2520.355 kb on + strand, within AO356_11095at 2520.355 kb on + strand, within AO356_11095at 2520.355 kb on + strand, within AO356_11095at 2520.355 kb on + strand, within AO356_11095at 2520.355 kb on + strand, within AO356_11095at 2520.356 kb on - strand, within AO356_11095at 2520.356 kb on - strand, within AO356_11095at 2520.356 kb on - strand, within AO356_11095at 2520.356 kb on - strand, within AO356_11095at 2520.356 kb on - strand, within AO356_11095at 2520.356 kb on - strand, within AO356_11095at 2520.356 kb on - strand, within AO356_11095at 2520.400 kb on + strand, within AO356_11095at 2520.400 kb on + strand, within AO356_11095at 2520.400 kb on + strand, within AO356_11095at 2520.400 kb on + strand, within AO356_11095at 2520.400 kb on + strand, within AO356_11095at 2520.400 kb on + strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.401 kb on - strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.403 kb on + strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095at 2520.404 kb on - strand, within AO356_11095

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,517,174 + AO356_11085 0.18 +0.3
2,517,328 + AO356_11085 0.35 -0.7
2,517,329 - AO356_11085 0.35 -0.1
2,517,478 + AO356_11085 0.51 -1.5
2,517,478 + AO356_11085 0.51 +0.8
2,517,478 + AO356_11085 0.51 +0.9
2,517,478 + AO356_11085 0.51 -0.0
2,517,478 + AO356_11085 0.51 +0.6
2,517,479 - AO356_11085 0.51 +0.6
2,517,479 - AO356_11085 0.51 -0.8
2,517,479 - AO356_11085 0.51 -0.3
2,517,479 - AO356_11085 0.51 -1.0
2,517,479 - AO356_11085 0.51 +0.6
2,517,479 - AO356_11085 0.51 -0.2
2,517,479 - AO356_11085 0.51 -0.4
2,517,713 + AO356_11085 0.77 -0.3
2,517,713 + AO356_11085 0.77 -1.4
2,517,713 + AO356_11085 0.77 +0.3
2,517,714 - AO356_11085 0.77 -0.8
2,517,714 - AO356_11085 0.77 +0.2
2,517,765 - AO356_11085 0.82 -0.4
2,517,765 - AO356_11085 0.82 +0.3
2,517,940 - -0.1
2,518,004 - -0.2
2,518,010 - +0.0
2,518,163 - -2.2
2,518,163 - +0.6
2,518,176 + +0.1
2,518,176 + -0.0
2,518,176 + +0.4
2,518,177 - +0.4
2,518,177 - +1.2
2,518,177 - +0.6
2,518,177 - -0.4
2,518,177 - +0.3
2,518,177 - -0.8
2,518,177 - +0.2
2,518,177 - +1.6
2,518,179 + -0.2
2,518,179 + -0.8
2,518,180 - +0.6
2,518,195 + +0.3
2,518,196 - -0.4
2,518,196 - +0.6
2,518,242 + +0.2
2,518,243 - +0.3
2,518,495 - AO356_11090 0.27 +1.4
2,518,500 + AO356_11090 0.28 +0.4
2,518,501 - AO356_11090 0.28 +0.7
2,518,501 - AO356_11090 0.28 -0.3
2,519,222 + AO356_11090 0.78 -0.7
2,519,223 - AO356_11090 0.78 +0.6
2,519,364 + AO356_11090 0.88 +0.8
2,519,364 + AO356_11090 0.88 +1.7
2,519,365 - AO356_11090 0.88 +0.6
2,519,566 - +0.9
2,519,618 - -0.6
2,519,624 + -0.1
2,519,624 + +0.1
2,519,694 + +1.0
2,519,748 - -1.1
2,519,748 - -0.2
2,519,748 - -0.9
2,519,817 + +1.6
2,519,817 + -1.2
2,519,817 + +0.2
2,519,817 + +1.6
2,519,817 + -0.7
2,519,817 + +0.3
2,519,817 + +0.5
2,519,817 + +0.1
2,519,817 + -0.4
2,519,817 + +0.9
2,519,818 - -1.2
2,519,818 - -0.1
2,519,818 - -0.4
2,519,818 - -0.6
2,519,818 - -1.1
2,519,818 - -0.5
2,519,818 - +0.7
2,519,818 - +0.9
2,519,818 - +0.7
2,519,818 - +0.7
2,519,818 - -0.6
2,519,821 + +0.7
2,519,821 + +0.1
2,519,821 + -1.2
2,519,821 + +0.5
2,519,821 + -1.5
2,519,821 + +0.5
2,519,821 + +0.5
2,519,821 + +0.3
2,519,821 + +0.2
2,519,821 + +1.0
2,519,821 + +0.2
2,519,821 + -0.3
2,519,821 + +0.4
2,519,821 + +0.5
2,519,821 + +0.4
2,519,821 + -0.5
2,519,821 + -0.2
2,519,822 - -0.4
2,519,822 - +0.2
2,519,822 - -0.1
2,519,822 - -0.2
2,519,822 - +0.3
2,519,822 - -0.0
2,519,822 - -0.2
2,519,822 - -0.3
2,519,822 - +0.2
2,519,822 - +0.1
2,519,822 - -0.0
2,519,822 - -0.4
2,519,822 - +0.2
2,519,822 - +0.4
2,519,822 - +0.5
2,519,822 - -1.2
2,519,822 - +0.1
2,519,822 - -0.4
2,519,822 - +0.7
2,519,822 - -1.2
2,519,822 - +1.1
2,519,822 - -2.0
2,519,822 - +0.3
2,519,822 - +0.1
2,519,823 + -0.2
2,519,823 + +0.2
2,519,823 + +0.3
2,519,823 + -0.2
2,519,824 - +0.2
2,519,824 - +1.2
2,519,824 - +0.2
2,519,824 - -0.6
2,519,824 - -0.4
2,519,824 - -1.0
2,519,869 + +1.2
2,519,869 + -0.3
2,519,869 + +0.6
2,519,869 + +0.9
2,519,870 - -0.1
2,519,870 - +0.3
2,519,889 + -0.1
2,519,889 + -0.4
2,519,889 + +1.7
2,519,889 + +3.9
2,519,889 + +0.4
2,519,889 + +0.8
2,519,889 + +1.6
2,519,889 + +0.1
2,519,889 + -1.2
2,519,889 + -0.4
2,519,889 + +0.3
2,519,890 - -0.9
2,519,890 - -0.9
2,519,890 - -0.9
2,519,890 - -0.2
2,519,892 + -0.3
2,519,892 + +1.3
2,519,893 - +0.4
2,519,893 - +0.6
2,519,893 - -0.2
2,519,893 - +0.1
2,519,961 - -0.7
2,519,969 - -1.4
2,519,993 + -0.2
2,519,994 - +0.4
2,519,994 - +0.6
2,520,014 + -0.1
2,520,014 + +0.5
2,520,014 + -0.2
2,520,014 + +0.3
2,520,014 + +0.8
2,520,015 - +0.6
2,520,015 - +0.5
2,520,015 - +0.1
2,520,015 - -0.7
2,520,015 - +0.8
2,520,015 - -1.0
2,520,044 + +1.3
2,520,044 + +0.2
2,520,044 + -0.1
2,520,045 - -1.1
2,520,045 - +0.4
2,520,045 - -0.7
2,520,088 + +1.6
2,520,088 + +0.1
2,520,089 - +1.3
2,520,315 + AO356_11095 0.20 -0.0
2,520,315 + AO356_11095 0.20 -1.1
2,520,316 - AO356_11095 0.20 +1.0
2,520,316 - AO356_11095 0.20 -0.4
2,520,355 + AO356_11095 0.23 +1.0
2,520,355 + AO356_11095 0.23 +0.9
2,520,355 + AO356_11095 0.23 +0.3
2,520,355 + AO356_11095 0.23 -0.0
2,520,355 + AO356_11095 0.23 +0.1
2,520,356 - AO356_11095 0.23 +0.5
2,520,356 - AO356_11095 0.23 -0.7
2,520,356 - AO356_11095 0.23 -1.3
2,520,356 - AO356_11095 0.23 -0.2
2,520,356 - AO356_11095 0.23 +1.2
2,520,356 - AO356_11095 0.23 -0.0
2,520,356 - AO356_11095 0.23 -0.1
2,520,400 + AO356_11095 0.26 +0.7
2,520,400 + AO356_11095 0.26 +0.8
2,520,400 + AO356_11095 0.26 -0.5
2,520,400 + AO356_11095 0.26 +1.2
2,520,400 + AO356_11095 0.26 +2.0
2,520,400 + AO356_11095 0.26 -0.2
2,520,401 - AO356_11095 0.26 +0.8
2,520,401 - AO356_11095 0.26 -0.3
2,520,401 - AO356_11095 0.26 +0.1
2,520,401 - AO356_11095 0.26 -0.3
2,520,401 - AO356_11095 0.26 -1.3
2,520,401 - AO356_11095 0.26 -0.2
2,520,401 - AO356_11095 0.26 -0.3
2,520,401 - AO356_11095 0.26 -0.2
2,520,401 - AO356_11095 0.26 +0.3
2,520,401 - AO356_11095 0.26 +0.4
2,520,403 + AO356_11095 0.26 -0.3
2,520,403 + AO356_11095 0.26 -0.3
2,520,403 + AO356_11095 0.26 +0.3
2,520,403 + AO356_11095 0.26 -1.7
2,520,403 + AO356_11095 0.26 -0.4
2,520,403 + AO356_11095 0.26 -1.6
2,520,403 + AO356_11095 0.26 -1.1
2,520,403 + AO356_11095 0.26 +0.2
2,520,403 + AO356_11095 0.26 -0.2
2,520,403 + AO356_11095 0.26 +1.2
2,520,403 + AO356_11095 0.26 +0.2
2,520,403 + AO356_11095 0.26 -0.8
2,520,404 - AO356_11095 0.27 -0.6
2,520,404 - AO356_11095 0.27 -0.1
2,520,404 - AO356_11095 0.27 +0.3
2,520,404 - AO356_11095 0.27 -0.7
2,520,404 - AO356_11095 0.27 +0.3
2,520,404 - AO356_11095 0.27 +0.6
2,520,404 - AO356_11095 0.27 -0.6
2,520,404 - AO356_11095 0.27 -0.2

Or see this region's nucleotide sequence