Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10485

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10475 and AO356_10480 are separated by 306 nucleotidesAO356_10480 and AO356_10485 are separated by 45 nucleotidesAO356_10485 and AO356_10490 are separated by 132 nucleotidesAO356_10490 and AO356_10495 are separated by 15 nucleotides AO356_10475: AO356_10475 - sulfotransferase, at 2,367,920 to 2,368,765 _10475 AO356_10480: AO356_10480 - phage tail protein, at 2,369,072 to 2,369,659 _10480 AO356_10485: AO356_10485 - hypothetical protein, at 2,369,705 to 2,370,016 _10485 AO356_10490: AO356_10490 - acetyltransferase, at 2,370,149 to 2,370,640 _10490 AO356_10495: AO356_10495 - peptidase M50, at 2,370,656 to 2,372,752 _10495 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -1 0 1at 2368.738 kb on + strandat 2368.739 kb on - strandat 2368.774 kb on + strandat 2368.774 kb on + strandat 2368.775 kb on - strandat 2368.775 kb on - strandat 2368.797 kb on + strandat 2368.797 kb on + strandat 2368.809 kb on + strandat 2368.810 kb on - strandat 2368.810 kb on - strandat 2368.820 kb on + strandat 2368.821 kb on - strandat 2368.821 kb on - strandat 2368.824 kb on - strandat 2368.824 kb on - strandat 2368.847 kb on + strandat 2368.847 kb on + strandat 2368.847 kb on + strandat 2368.847 kb on + strandat 2368.847 kb on + strandat 2368.848 kb on - strandat 2368.848 kb on - strandat 2368.852 kb on + strandat 2368.853 kb on - strandat 2368.853 kb on - strandat 2368.858 kb on + strandat 2368.872 kb on - strandat 2368.872 kb on - strandat 2368.898 kb on + strandat 2368.898 kb on + strandat 2368.957 kb on + strandat 2368.958 kb on - strandat 2368.990 kb on - strandat 2368.990 kb on - strandat 2369.071 kb on + strandat 2369.071 kb on + strandat 2369.071 kb on + strandat 2369.071 kb on + strandat 2369.072 kb on - strandat 2369.072 kb on - strandat 2369.072 kb on - strandat 2369.072 kb on - strandat 2369.079 kb on + strandat 2369.079 kb on + strandat 2369.079 kb on + strandat 2369.079 kb on + strandat 2369.079 kb on + strandat 2369.079 kb on + strandat 2369.080 kb on - strandat 2369.080 kb on - strandat 2369.080 kb on - strandat 2369.092 kb on + strandat 2369.093 kb on - strandat 2369.111 kb on - strandat 2369.169 kb on - strand, within AO356_10480at 2369.169 kb on - strand, within AO356_10480at 2369.201 kb on + strand, within AO356_10480at 2369.202 kb on - strand, within AO356_10480at 2369.202 kb on - strand, within AO356_10480at 2369.492 kb on + strand, within AO356_10480at 2369.492 kb on + strand, within AO356_10480at 2369.492 kb on + strand, within AO356_10480at 2369.639 kb on + strandat 2369.639 kb on + strandat 2369.639 kb on + strandat 2369.640 kb on - strandat 2369.640 kb on - strandat 2369.640 kb on - strandat 2369.640 kb on - strandat 2369.653 kb on + strandat 2369.654 kb on - strandat 2369.654 kb on - strandat 2369.654 kb on - strandat 2369.654 kb on - strandat 2369.946 kb on + strand, within AO356_10485at 2369.946 kb on + strand, within AO356_10485at 2369.993 kb on + strandat 2369.993 kb on + strandat 2369.993 kb on + strandat 2369.994 kb on - strandat 2369.994 kb on - strandat 2369.994 kb on - strandat 2369.999 kb on + strandat 2370.000 kb on - strandat 2370.000 kb on - strandat 2370.000 kb on - strandat 2370.000 kb on - strandat 2370.000 kb on - strandat 2370.011 kb on - strandat 2370.014 kb on + strandat 2370.014 kb on + strandat 2370.014 kb on + strandat 2370.015 kb on - strandat 2370.225 kb on + strand, within AO356_10490at 2370.226 kb on - strand, within AO356_10490at 2370.226 kb on - strand, within AO356_10490at 2370.226 kb on - strand, within AO356_10490at 2370.315 kb on - strand, within AO356_10490at 2370.363 kb on + strand, within AO356_10490at 2370.363 kb on + strand, within AO356_10490at 2370.438 kb on + strand, within AO356_10490at 2370.438 kb on + strand, within AO356_10490at 2370.438 kb on + strand, within AO356_10490at 2370.438 kb on + strand, within AO356_10490at 2370.438 kb on + strand, within AO356_10490at 2370.439 kb on - strand, within AO356_10490at 2370.439 kb on - strand, within AO356_10490at 2370.439 kb on - strand, within AO356_10490at 2370.439 kb on - strand, within AO356_10490at 2370.439 kb on - strand, within AO356_10490at 2370.564 kb on + strand, within AO356_10490at 2370.657 kb on + strandat 2370.657 kb on + strandat 2370.658 kb on - strandat 2370.658 kb on - strandat 2370.658 kb on - strandat 2370.680 kb on + strandat 2370.680 kb on + strandat 2370.681 kb on - strandat 2370.681 kb on - strandat 2370.681 kb on - strandat 2370.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,368,738 + +0.1
2,368,739 - +0.3
2,368,774 + -0.2
2,368,774 + -1.1
2,368,775 - +0.4
2,368,775 - +1.0
2,368,797 + -0.2
2,368,797 + -0.0
2,368,809 + -0.9
2,368,810 - -0.5
2,368,810 - +0.1
2,368,820 + +0.3
2,368,821 - +0.3
2,368,821 - -0.3
2,368,824 - +0.3
2,368,824 - -0.0
2,368,847 + +0.6
2,368,847 + +0.8
2,368,847 + +0.8
2,368,847 + -0.1
2,368,847 + -0.2
2,368,848 - -0.6
2,368,848 - -1.0
2,368,852 + +0.6
2,368,853 - -0.6
2,368,853 - -1.1
2,368,858 + -1.4
2,368,872 - +0.8
2,368,872 - +0.0
2,368,898 + -1.3
2,368,898 + -0.2
2,368,957 + +0.9
2,368,958 - +1.0
2,368,990 - -0.5
2,368,990 - -0.9
2,369,071 + +0.8
2,369,071 + +1.0
2,369,071 + +0.5
2,369,071 + -0.1
2,369,072 - +0.1
2,369,072 - +0.2
2,369,072 - -0.3
2,369,072 - +0.5
2,369,079 + +0.8
2,369,079 + +0.3
2,369,079 + +0.1
2,369,079 + -1.0
2,369,079 + -1.0
2,369,079 + -0.1
2,369,080 - -0.6
2,369,080 - -1.4
2,369,080 - -0.3
2,369,092 + +1.1
2,369,093 - +0.1
2,369,111 - -1.5
2,369,169 - AO356_10480 0.16 +0.4
2,369,169 - AO356_10480 0.16 -0.7
2,369,201 + AO356_10480 0.22 -0.1
2,369,202 - AO356_10480 0.22 +0.5
2,369,202 - AO356_10480 0.22 +0.4
2,369,492 + AO356_10480 0.71 +0.3
2,369,492 + AO356_10480 0.71 -0.6
2,369,492 + AO356_10480 0.71 +1.5
2,369,639 + -0.7
2,369,639 + +1.5
2,369,639 + -0.1
2,369,640 - +0.1
2,369,640 - +0.2
2,369,640 - +0.6
2,369,640 - -0.1
2,369,653 + -0.5
2,369,654 - -0.5
2,369,654 - +0.1
2,369,654 - -0.8
2,369,654 - +0.0
2,369,946 + AO356_10485 0.77 -0.9
2,369,946 + AO356_10485 0.77 -0.7
2,369,993 + -0.7
2,369,993 + +0.2
2,369,993 + -0.2
2,369,994 - +0.3
2,369,994 - +0.1
2,369,994 - -0.6
2,369,999 + -1.1
2,370,000 - +0.8
2,370,000 - +0.0
2,370,000 - -0.2
2,370,000 - +0.1
2,370,000 - -1.0
2,370,011 - -0.1
2,370,014 + +0.2
2,370,014 + +0.2
2,370,014 + -0.1
2,370,015 - -0.5
2,370,225 + AO356_10490 0.15 +0.6
2,370,226 - AO356_10490 0.16 +0.2
2,370,226 - AO356_10490 0.16 +1.3
2,370,226 - AO356_10490 0.16 -0.9
2,370,315 - AO356_10490 0.34 +0.2
2,370,363 + AO356_10490 0.43 +0.4
2,370,363 + AO356_10490 0.43 -0.2
2,370,438 + AO356_10490 0.59 +0.3
2,370,438 + AO356_10490 0.59 +0.2
2,370,438 + AO356_10490 0.59 -0.1
2,370,438 + AO356_10490 0.59 +1.5
2,370,438 + AO356_10490 0.59 +0.0
2,370,439 - AO356_10490 0.59 -1.3
2,370,439 - AO356_10490 0.59 +0.2
2,370,439 - AO356_10490 0.59 -0.6
2,370,439 - AO356_10490 0.59 -0.5
2,370,439 - AO356_10490 0.59 -1.3
2,370,564 + AO356_10490 0.84 +0.2
2,370,657 + +0.6
2,370,657 + -0.7
2,370,658 - -0.1
2,370,658 - +1.1
2,370,658 - +1.5
2,370,680 + +0.5
2,370,680 + +0.9
2,370,681 - +0.6
2,370,681 - +1.5
2,370,681 - -0.5
2,370,805 - +0.5

Or see this region's nucleotide sequence