Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10255

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_10250 and AO356_10255 are separated by 334 nucleotidesAO356_10255 and AO356_10260 are separated by 23 nucleotides AO356_10250: AO356_10250 - hypothetical protein, at 2,313,195 to 2,313,965 _10250 AO356_10255: AO356_10255 - SfnB family sulfur acquisition oxidoreductase, at 2,314,300 to 2,315,541 _10255 AO356_10260: AO356_10260 - SfnB family sulfur acquisition oxidoreductase, at 2,315,565 to 2,316,758 _10260 Position (kb) 2314 2315 2316Strain fitness (log2 ratio) -2 -1 0 1 2at 2313.357 kb on + strand, within AO356_10250at 2313.357 kb on + strand, within AO356_10250at 2313.357 kb on + strand, within AO356_10250at 2313.358 kb on - strand, within AO356_10250at 2313.358 kb on - strand, within AO356_10250at 2313.358 kb on - strand, within AO356_10250at 2313.663 kb on + strand, within AO356_10250at 2313.663 kb on + strand, within AO356_10250at 2313.664 kb on - strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.764 kb on + strand, within AO356_10250at 2313.765 kb on - strand, within AO356_10250at 2313.765 kb on - strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.825 kb on + strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.826 kb on - strand, within AO356_10250at 2313.966 kb on + strandat 2313.966 kb on + strandat 2313.966 kb on + strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2313.967 kb on - strandat 2314.098 kb on + strandat 2314.098 kb on + strandat 2314.098 kb on + strandat 2314.098 kb on + strandat 2314.099 kb on - strandat 2314.099 kb on - strandat 2314.099 kb on - strandat 2314.099 kb on - strandat 2314.107 kb on + strandat 2314.109 kb on + strandat 2314.155 kb on + strandat 2314.179 kb on + strandat 2314.179 kb on + strandat 2314.180 kb on - strandat 2314.180 kb on - strandat 2314.180 kb on - strandat 2314.180 kb on - strandat 2314.232 kb on - strandat 2314.263 kb on - strandat 2314.263 kb on - strandat 2314.298 kb on + strandat 2314.298 kb on + strandat 2314.299 kb on - strandat 2314.299 kb on - strandat 2314.299 kb on - strandat 2314.299 kb on - strandat 2314.528 kb on + strand, within AO356_10255at 2314.568 kb on + strand, within AO356_10255at 2314.569 kb on - strand, within AO356_10255at 2314.811 kb on - strand, within AO356_10255at 2314.967 kb on + strand, within AO356_10255at 2314.968 kb on - strand, within AO356_10255at 2315.039 kb on + strand, within AO356_10255at 2315.039 kb on + strand, within AO356_10255at 2315.039 kb on + strand, within AO356_10255at 2315.040 kb on - strand, within AO356_10255at 2315.182 kb on + strand, within AO356_10255at 2315.182 kb on + strand, within AO356_10255at 2315.182 kb on + strand, within AO356_10255at 2315.182 kb on + strand, within AO356_10255at 2315.182 kb on + strand, within AO356_10255at 2315.182 kb on + strand, within AO356_10255at 2315.183 kb on - strand, within AO356_10255at 2315.183 kb on - strand, within AO356_10255at 2315.183 kb on - strand, within AO356_10255at 2315.183 kb on - strand, within AO356_10255at 2315.183 kb on - strand, within AO356_10255at 2315.183 kb on - strand, within AO356_10255at 2315.479 kb on + strandat 2315.479 kb on + strandat 2315.479 kb on + strandat 2315.480 kb on - strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.562 kb on + strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.563 kb on - strandat 2315.722 kb on + strand, within AO356_10260at 2315.737 kb on + strand, within AO356_10260at 2315.738 kb on - strand, within AO356_10260at 2315.775 kb on - strand, within AO356_10260at 2315.790 kb on - strand, within AO356_10260at 2315.790 kb on - strand, within AO356_10260at 2315.790 kb on - strand, within AO356_10260at 2315.790 kb on - strand, within AO356_10260at 2315.790 kb on - strand, within AO356_10260at 2315.790 kb on - strand, within AO356_10260at 2315.790 kb on - strand, within AO356_10260at 2315.848 kb on - strand, within AO356_10260at 2315.848 kb on - strand, within AO356_10260at 2315.901 kb on + strand, within AO356_10260at 2315.902 kb on - strand, within AO356_10260at 2316.006 kb on + strand, within AO356_10260at 2316.030 kb on + strand, within AO356_10260at 2316.030 kb on + strand, within AO356_10260at 2316.044 kb on + strand, within AO356_10260at 2316.044 kb on + strand, within AO356_10260at 2316.044 kb on + strand, within AO356_10260at 2316.045 kb on - strand, within AO356_10260at 2316.045 kb on - strand, within AO356_10260at 2316.045 kb on - strand, within AO356_10260at 2316.045 kb on - strand, within AO356_10260at 2316.045 kb on - strand, within AO356_10260at 2316.048 kb on + strand, within AO356_10260at 2316.048 kb on + strand, within AO356_10260at 2316.048 kb on + strand, within AO356_10260at 2316.048 kb on + strand, within AO356_10260at 2316.048 kb on + strand, within AO356_10260at 2316.048 kb on + strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.049 kb on - strand, within AO356_10260at 2316.059 kb on + strand, within AO356_10260at 2316.059 kb on + strand, within AO356_10260at 2316.060 kb on - strand, within AO356_10260at 2316.204 kb on + strand, within AO356_10260at 2316.204 kb on + strand, within AO356_10260at 2316.204 kb on + strand, within AO356_10260at 2316.204 kb on + strand, within AO356_10260at 2316.204 kb on + strand, within AO356_10260at 2316.204 kb on + strand, within AO356_10260at 2316.204 kb on + strand, within AO356_10260at 2316.205 kb on - strand, within AO356_10260at 2316.205 kb on - strand, within AO356_10260at 2316.205 kb on - strand, within AO356_10260at 2316.321 kb on + strand, within AO356_10260at 2316.322 kb on - strand, within AO356_10260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
2,313,357 + AO356_10250 0.21 -0.2
2,313,357 + AO356_10250 0.21 -1.0
2,313,357 + AO356_10250 0.21 +0.2
2,313,358 - AO356_10250 0.21 +0.7
2,313,358 - AO356_10250 0.21 +0.3
2,313,358 - AO356_10250 0.21 +0.3
2,313,663 + AO356_10250 0.61 +0.1
2,313,663 + AO356_10250 0.61 -0.4
2,313,664 - AO356_10250 0.61 +0.4
2,313,764 + AO356_10250 0.74 -0.1
2,313,764 + AO356_10250 0.74 +0.1
2,313,764 + AO356_10250 0.74 +0.8
2,313,764 + AO356_10250 0.74 +0.1
2,313,764 + AO356_10250 0.74 -0.9
2,313,765 - AO356_10250 0.74 -1.3
2,313,765 - AO356_10250 0.74 +0.9
2,313,825 + AO356_10250 0.82 +2.1
2,313,825 + AO356_10250 0.82 +1.1
2,313,825 + AO356_10250 0.82 -0.0
2,313,825 + AO356_10250 0.82 -0.2
2,313,825 + AO356_10250 0.82 -0.4
2,313,825 + AO356_10250 0.82 -1.3
2,313,825 + AO356_10250 0.82 +0.2
2,313,826 - AO356_10250 0.82 +0.1
2,313,826 - AO356_10250 0.82 -0.8
2,313,826 - AO356_10250 0.82 -0.3
2,313,826 - AO356_10250 0.82 -0.1
2,313,826 - AO356_10250 0.82 +1.1
2,313,826 - AO356_10250 0.82 +0.4
2,313,966 + +0.5
2,313,966 + -0.3
2,313,966 + -0.1
2,313,967 - +0.3
2,313,967 - +0.5
2,313,967 - -0.5
2,313,967 - -0.4
2,313,967 - +0.3
2,314,098 + +0.8
2,314,098 + -0.5
2,314,098 + -1.8
2,314,098 + -0.8
2,314,099 - -0.0
2,314,099 - +0.2
2,314,099 - +1.5
2,314,099 - +0.9
2,314,107 + +0.6
2,314,109 + -0.2
2,314,155 + +1.2
2,314,179 + -1.1
2,314,179 + +0.5
2,314,180 - -0.1
2,314,180 - +0.9
2,314,180 - -0.3
2,314,180 - -0.7
2,314,232 - +0.1
2,314,263 - +0.5
2,314,263 - -0.9
2,314,298 + +0.6
2,314,298 + +1.3
2,314,299 - +0.4
2,314,299 - +0.4
2,314,299 - +0.7
2,314,299 - -0.8
2,314,528 + AO356_10255 0.18 +0.2
2,314,568 + AO356_10255 0.22 -1.1
2,314,569 - AO356_10255 0.22 -1.1
2,314,811 - AO356_10255 0.41 -0.9
2,314,967 + AO356_10255 0.54 +0.0
2,314,968 - AO356_10255 0.54 +0.0
2,315,039 + AO356_10255 0.60 +0.2
2,315,039 + AO356_10255 0.60 -0.0
2,315,039 + AO356_10255 0.60 +0.3
2,315,040 - AO356_10255 0.60 +0.2
2,315,182 + AO356_10255 0.71 +0.8
2,315,182 + AO356_10255 0.71 +0.6
2,315,182 + AO356_10255 0.71 +0.5
2,315,182 + AO356_10255 0.71 -0.4
2,315,182 + AO356_10255 0.71 -0.4
2,315,182 + AO356_10255 0.71 +0.1
2,315,183 - AO356_10255 0.71 +0.7
2,315,183 - AO356_10255 0.71 +0.3
2,315,183 - AO356_10255 0.71 -1.3
2,315,183 - AO356_10255 0.71 +0.2
2,315,183 - AO356_10255 0.71 +0.8
2,315,183 - AO356_10255 0.71 -0.5
2,315,479 + +0.3
2,315,479 + +0.3
2,315,479 + +0.5
2,315,480 - -0.2
2,315,562 + -0.2
2,315,562 + +1.0
2,315,562 + +1.1
2,315,562 + +1.0
2,315,562 + +0.5
2,315,562 + -1.1
2,315,562 + -1.3
2,315,562 + +0.4
2,315,562 + +0.2
2,315,562 + +0.2
2,315,562 + +0.0
2,315,563 - +0.3
2,315,563 - -0.3
2,315,563 - -0.0
2,315,563 - +0.5
2,315,563 - -0.2
2,315,563 - +0.2
2,315,563 - -0.5
2,315,563 - -0.4
2,315,563 - -0.1
2,315,563 - -0.2
2,315,563 - +0.8
2,315,563 - +1.1
2,315,563 - -0.3
2,315,563 - -0.1
2,315,722 + AO356_10260 0.13 -0.9
2,315,737 + AO356_10260 0.14 +0.2
2,315,738 - AO356_10260 0.14 -0.2
2,315,775 - AO356_10260 0.18 -0.4
2,315,790 - AO356_10260 0.19 -0.2
2,315,790 - AO356_10260 0.19 +0.8
2,315,790 - AO356_10260 0.19 -0.0
2,315,790 - AO356_10260 0.19 -0.5
2,315,790 - AO356_10260 0.19 +0.0
2,315,790 - AO356_10260 0.19 +0.3
2,315,790 - AO356_10260 0.19 +1.5
2,315,848 - AO356_10260 0.24 -0.1
2,315,848 - AO356_10260 0.24 +0.4
2,315,901 + AO356_10260 0.28 -0.3
2,315,902 - AO356_10260 0.28 +0.7
2,316,006 + AO356_10260 0.37 -0.4
2,316,030 + AO356_10260 0.39 +0.5
2,316,030 + AO356_10260 0.39 +0.1
2,316,044 + AO356_10260 0.40 +0.2
2,316,044 + AO356_10260 0.40 +0.0
2,316,044 + AO356_10260 0.40 +0.2
2,316,045 - AO356_10260 0.40 -0.2
2,316,045 - AO356_10260 0.40 +0.3
2,316,045 - AO356_10260 0.40 -0.1
2,316,045 - AO356_10260 0.40 +0.4
2,316,045 - AO356_10260 0.40 +0.1
2,316,048 + AO356_10260 0.40 -0.1
2,316,048 + AO356_10260 0.40 -0.9
2,316,048 + AO356_10260 0.40 +0.3
2,316,048 + AO356_10260 0.40 -1.7
2,316,048 + AO356_10260 0.40 +0.6
2,316,048 + AO356_10260 0.40 -0.2
2,316,049 - AO356_10260 0.41 -1.5
2,316,049 - AO356_10260 0.41 +0.1
2,316,049 - AO356_10260 0.41 +0.3
2,316,049 - AO356_10260 0.41 +0.4
2,316,049 - AO356_10260 0.41 -0.6
2,316,049 - AO356_10260 0.41 -0.4
2,316,049 - AO356_10260 0.41 +0.2
2,316,049 - AO356_10260 0.41 +0.9
2,316,049 - AO356_10260 0.41 -0.5
2,316,049 - AO356_10260 0.41 +0.9
2,316,059 + AO356_10260 0.41 +0.5
2,316,059 + AO356_10260 0.41 -0.2
2,316,060 - AO356_10260 0.41 +1.0
2,316,204 + AO356_10260 0.54 +1.1
2,316,204 + AO356_10260 0.54 +0.3
2,316,204 + AO356_10260 0.54 -0.4
2,316,204 + AO356_10260 0.54 -0.1
2,316,204 + AO356_10260 0.54 -0.4
2,316,204 + AO356_10260 0.54 +0.4
2,316,204 + AO356_10260 0.54 -0.1
2,316,205 - AO356_10260 0.54 +0.5
2,316,205 - AO356_10260 0.54 -0.9
2,316,205 - AO356_10260 0.54 -0.2
2,316,321 + AO356_10260 0.63 +0.0
2,316,322 - AO356_10260 0.63 -1.5

Or see this region's nucleotide sequence