Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09800 and AO356_09805 are separated by 42 nucleotides AO356_09805 and AO356_09810 overlap by 1 nucleotides AO356_09810 and AO356_09815 overlap by 1 nucleotides AO356_09815 and AO356_09820 are separated by 280 nucleotides
AO356_09800: AO356_09800 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 2,221,591 to 2,222,328
_09800
AO356_09805: AO356_09805 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 2,222,371 to 2,222,625
_09805
AO356_09810: AO356_09810 - imidazole glycerol phosphate synthase subunit HisH, at 2,222,625 to 2,223,263
_09810
AO356_09815: AO356_09815 - imidazoleglycerol-phosphate dehydratase, at 2,223,263 to 2,223,856
_09815
AO356_09820: AO356_09820 - MFS transporter, at 2,224,137 to 2,225,798
_09820
Position (kb)
2223
2224 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2222.284 kb on + strand at 2222.284 kb on + strand at 2222.284 kb on + strand at 2222.284 kb on + strand at 2222.285 kb on - strand at 2222.345 kb on + strand at 2222.345 kb on + strand at 2222.346 kb on - strand at 2222.346 kb on - strand at 2222.346 kb on - strand at 2222.351 kb on + strand at 2222.460 kb on - strand, within AO356_09805 at 2222.460 kb on - strand, within AO356_09805 at 2222.460 kb on - strand, within AO356_09805 at 2222.460 kb on - strand, within AO356_09805 at 2222.460 kb on - strand, within AO356_09805 at 2222.626 kb on + strand at 2222.626 kb on + strand at 2222.627 kb on - strand at 2222.678 kb on + strand at 2222.797 kb on + strand, within AO356_09810 at 2222.797 kb on + strand, within AO356_09810 at 2222.797 kb on + strand, within AO356_09810 at 2222.797 kb on + strand, within AO356_09810 at 2222.798 kb on - strand, within AO356_09810 at 2222.798 kb on - strand, within AO356_09810 at 2222.798 kb on - strand, within AO356_09810 at 2222.798 kb on - strand, within AO356_09810 at 2222.798 kb on - strand, within AO356_09810 at 2222.800 kb on + strand, within AO356_09810 at 2222.800 kb on + strand, within AO356_09810 at 2222.800 kb on + strand, within AO356_09810 at 2222.800 kb on + strand, within AO356_09810 at 2222.800 kb on + strand, within AO356_09810 at 2222.800 kb on + strand, within AO356_09810 at 2222.800 kb on + strand, within AO356_09810 at 2222.801 kb on - strand, within AO356_09810 at 2222.801 kb on - strand, within AO356_09810 at 2222.801 kb on - strand, within AO356_09810 at 2222.801 kb on - strand, within AO356_09810 at 2222.816 kb on - strand, within AO356_09810 at 2222.816 kb on - strand, within AO356_09810 at 2223.264 kb on + strand at 2223.489 kb on + strand, within AO356_09815 at 2223.490 kb on - strand, within AO356_09815 at 2223.490 kb on - strand, within AO356_09815 at 2223.490 kb on - strand, within AO356_09815 at 2223.567 kb on + strand, within AO356_09815 at 2223.568 kb on - strand, within AO356_09815 at 2223.568 kb on - strand, within AO356_09815 at 2223.568 kb on - strand, within AO356_09815 at 2223.568 kb on - strand, within AO356_09815 at 2223.568 kb on - strand, within AO356_09815 at 2223.616 kb on + strand, within AO356_09815 at 2223.655 kb on + strand, within AO356_09815 at 2223.655 kb on + strand, within AO356_09815 at 2223.655 kb on + strand, within AO356_09815 at 2223.656 kb on - strand, within AO356_09815 at 2223.656 kb on - strand, within AO356_09815 at 2223.656 kb on - strand, within AO356_09815 at 2223.753 kb on - strand, within AO356_09815 at 2223.753 kb on - strand, within AO356_09815 at 2223.753 kb on - strand, within AO356_09815 at 2223.844 kb on + strand at 2223.845 kb on - strand at 2223.845 kb on - strand at 2223.845 kb on - strand at 2223.897 kb on + strand at 2223.897 kb on + strand at 2223.898 kb on - strand at 2223.898 kb on - strand at 2223.898 kb on - strand at 2223.898 kb on - strand at 2223.898 kb on - strand at 2223.899 kb on + strand at 2223.899 kb on + strand at 2223.900 kb on - strand at 2223.971 kb on + strand at 2223.971 kb on + strand at 2223.972 kb on - strand at 2223.972 kb on - strand at 2223.972 kb on - strand at 2223.983 kb on + strand at 2223.983 kb on + strand at 2223.983 kb on + strand at 2223.983 kb on + strand at 2223.983 kb on + strand at 2223.983 kb on + strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2223.984 kb on - strand at 2224.071 kb on + strand at 2224.071 kb on + strand at 2224.071 kb on + strand at 2224.071 kb on + strand at 2224.071 kb on + strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.072 kb on - strand at 2224.138 kb on + strand at 2224.333 kb on + strand, within AO356_09820 at 2224.333 kb on + strand, within AO356_09820 at 2224.333 kb on + strand, within AO356_09820 at 2224.334 kb on - strand, within AO356_09820 at 2224.334 kb on - strand, within AO356_09820 at 2224.334 kb on - strand, within AO356_09820 at 2224.334 kb on - strand, within AO356_09820 at 2224.334 kb on - strand, within AO356_09820 at 2224.334 kb on - strand, within AO356_09820 at 2224.402 kb on + strand, within AO356_09820 at 2224.402 kb on + strand, within AO356_09820 at 2224.402 kb on + strand, within AO356_09820 at 2224.402 kb on + strand, within AO356_09820 at 2224.402 kb on + strand, within AO356_09820 at 2224.402 kb on + strand, within AO356_09820 at 2224.402 kb on + strand, within AO356_09820 at 2224.403 kb on - strand, within AO356_09820 at 2224.403 kb on - strand, within AO356_09820 at 2224.403 kb on - strand, within AO356_09820 at 2224.403 kb on - strand, within AO356_09820 at 2224.403 kb on - strand, within AO356_09820 at 2224.403 kb on - strand, within AO356_09820 at 2224.403 kb on - strand, within AO356_09820 at 2224.454 kb on - strand, within AO356_09820 at 2224.454 kb on - strand, within AO356_09820 at 2224.465 kb on + strand, within AO356_09820 at 2224.466 kb on - strand, within AO356_09820 at 2224.466 kb on - strand, within AO356_09820 at 2224.466 kb on - strand, within AO356_09820 at 2224.466 kb on - strand, within AO356_09820 at 2224.466 kb on - strand, within AO356_09820 at 2224.597 kb on + strand, within AO356_09820 at 2224.675 kb on + strand, within AO356_09820 at 2224.676 kb on - strand, within AO356_09820 at 2224.676 kb on - strand, within AO356_09820 at 2224.676 kb on - strand, within AO356_09820 at 2224.708 kb on + strand, within AO356_09820 at 2224.708 kb on + strand, within AO356_09820 at 2224.708 kb on + strand, within AO356_09820 at 2224.708 kb on + strand, within AO356_09820 at 2224.708 kb on + strand, within AO356_09820 at 2224.708 kb on + strand, within AO356_09820 at 2224.709 kb on - strand, within AO356_09820 at 2224.719 kb on - strand, within AO356_09820 at 2224.719 kb on - strand, within AO356_09820 at 2224.729 kb on + strand, within AO356_09820 at 2224.829 kb on + strand, within AO356_09820 at 2224.830 kb on - strand, within AO356_09820
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 2,222,284 + -1.5 2,222,284 + -0.2 2,222,284 + -0.3 2,222,284 + +0.1 2,222,285 - +0.9 2,222,345 + -1.8 2,222,345 + +0.2 2,222,346 - -0.4 2,222,346 - +1.2 2,222,346 - +0.3 2,222,351 + +1.3 2,222,460 - AO356_09805 0.35 -1.5 2,222,460 - AO356_09805 0.35 +0.7 2,222,460 - AO356_09805 0.35 -0.3 2,222,460 - AO356_09805 0.35 -1.3 2,222,460 - AO356_09805 0.35 +0.5 2,222,626 + -0.2 2,222,626 + +0.2 2,222,627 - -0.1 2,222,678 + -1.3 2,222,797 + AO356_09810 0.27 +1.2 2,222,797 + AO356_09810 0.27 +0.3 2,222,797 + AO356_09810 0.27 +0.8 2,222,797 + AO356_09810 0.27 -1.2 2,222,798 - AO356_09810 0.27 -0.4 2,222,798 - AO356_09810 0.27 +0.3 2,222,798 - AO356_09810 0.27 -0.1 2,222,798 - AO356_09810 0.27 -0.8 2,222,798 - AO356_09810 0.27 -1.5 2,222,800 + AO356_09810 0.27 -0.2 2,222,800 + AO356_09810 0.27 -1.1 2,222,800 + AO356_09810 0.27 -0.8 2,222,800 + AO356_09810 0.27 +0.6 2,222,800 + AO356_09810 0.27 -0.1 2,222,800 + AO356_09810 0.27 -0.5 2,222,800 + AO356_09810 0.27 +1.2 2,222,801 - AO356_09810 0.28 -1.5 2,222,801 - AO356_09810 0.28 -2.1 2,222,801 - AO356_09810 0.28 +0.3 2,222,801 - AO356_09810 0.28 +0.5 2,222,816 - AO356_09810 0.30 -1.4 2,222,816 - AO356_09810 0.30 +1.5 2,223,264 + -0.1 2,223,489 + AO356_09815 0.38 -0.8 2,223,490 - AO356_09815 0.38 -0.4 2,223,490 - AO356_09815 0.38 -1.1 2,223,490 - AO356_09815 0.38 +0.6 2,223,567 + AO356_09815 0.51 -0.3 2,223,568 - AO356_09815 0.51 -0.9 2,223,568 - AO356_09815 0.51 -1.7 2,223,568 - AO356_09815 0.51 -2.1 2,223,568 - AO356_09815 0.51 -0.4 2,223,568 - AO356_09815 0.51 +0.5 2,223,616 + AO356_09815 0.59 -0.8 2,223,655 + AO356_09815 0.66 -0.2 2,223,655 + AO356_09815 0.66 -0.4 2,223,655 + AO356_09815 0.66 -2.5 2,223,656 - AO356_09815 0.66 -0.9 2,223,656 - AO356_09815 0.66 -2.5 2,223,656 - AO356_09815 0.66 -1.7 2,223,753 - AO356_09815 0.82 +0.8 2,223,753 - AO356_09815 0.82 -1.0 2,223,753 - AO356_09815 0.82 -3.1 2,223,844 + -0.8 2,223,845 - -0.8 2,223,845 - -0.1 2,223,845 - -1.2 2,223,897 + -1.2 2,223,897 + -0.3 2,223,898 - +0.7 2,223,898 - +0.5 2,223,898 - -0.5 2,223,898 - -0.3 2,223,898 - -0.2 2,223,899 + +0.3 2,223,899 + +1.4 2,223,900 - +0.0 2,223,971 + +0.6 2,223,971 + +1.0 2,223,972 - +0.2 2,223,972 - +0.1 2,223,972 - -0.4 2,223,983 + -1.1 2,223,983 + +0.6 2,223,983 + +0.1 2,223,983 + +0.1 2,223,983 + +0.8 2,223,983 + +0.5 2,223,984 - -1.0 2,223,984 - +0.7 2,223,984 - -0.5 2,223,984 - -0.2 2,223,984 - -0.0 2,223,984 - -1.2 2,223,984 - -0.5 2,223,984 - -0.2 2,223,984 - +0.3 2,223,984 - -0.5 2,223,984 - -1.2 2,224,071 + -0.5 2,224,071 + +0.6 2,224,071 + +0.7 2,224,071 + -0.0 2,224,071 + +0.4 2,224,072 - -0.4 2,224,072 - -0.6 2,224,072 - +0.5 2,224,072 - +0.2 2,224,072 - +0.6 2,224,072 - -0.1 2,224,072 - -2.0 2,224,072 - +0.6 2,224,072 - +0.1 2,224,072 - +0.2 2,224,072 - +0.6 2,224,138 + -0.4 2,224,333 + AO356_09820 0.12 +1.5 2,224,333 + AO356_09820 0.12 +0.6 2,224,333 + AO356_09820 0.12 -0.2 2,224,334 - AO356_09820 0.12 +0.1 2,224,334 - AO356_09820 0.12 +0.6 2,224,334 - AO356_09820 0.12 -0.6 2,224,334 - AO356_09820 0.12 -0.1 2,224,334 - AO356_09820 0.12 -1.0 2,224,334 - AO356_09820 0.12 +0.8 2,224,402 + AO356_09820 0.16 -0.4 2,224,402 + AO356_09820 0.16 -0.6 2,224,402 + AO356_09820 0.16 -0.9 2,224,402 + AO356_09820 0.16 +1.1 2,224,402 + AO356_09820 0.16 +0.1 2,224,402 + AO356_09820 0.16 +0.3 2,224,402 + AO356_09820 0.16 +1.0 2,224,403 - AO356_09820 0.16 +1.9 2,224,403 - AO356_09820 0.16 +0.4 2,224,403 - AO356_09820 0.16 +0.3 2,224,403 - AO356_09820 0.16 -0.4 2,224,403 - AO356_09820 0.16 +0.2 2,224,403 - AO356_09820 0.16 +0.7 2,224,403 - AO356_09820 0.16 +0.1 2,224,454 - AO356_09820 0.19 +0.5 2,224,454 - AO356_09820 0.19 +0.0 2,224,465 + AO356_09820 0.20 -0.1 2,224,466 - AO356_09820 0.20 +0.6 2,224,466 - AO356_09820 0.20 +0.3 2,224,466 - AO356_09820 0.20 +0.5 2,224,466 - AO356_09820 0.20 -0.1 2,224,466 - AO356_09820 0.20 +0.4 2,224,597 + AO356_09820 0.28 +0.1 2,224,675 + AO356_09820 0.32 -1.1 2,224,676 - AO356_09820 0.32 -0.1 2,224,676 - AO356_09820 0.32 +0.8 2,224,676 - AO356_09820 0.32 +0.2 2,224,708 + AO356_09820 0.34 -0.9 2,224,708 + AO356_09820 0.34 +0.4 2,224,708 + AO356_09820 0.34 +0.2 2,224,708 + AO356_09820 0.34 -0.2 2,224,708 + AO356_09820 0.34 -0.1 2,224,708 + AO356_09820 0.34 -0.5 2,224,709 - AO356_09820 0.34 -0.7 2,224,719 - AO356_09820 0.35 -1.1 2,224,719 - AO356_09820 0.35 -0.9 2,224,729 + AO356_09820 0.36 +0.3 2,224,829 + AO356_09820 0.42 +1.1 2,224,830 - AO356_09820 0.42 +0.0
Or see this region's nucleotide sequence