Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09540

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09525 and AO356_09530 are separated by 24 nucleotidesAO356_09530 and AO356_09535 are separated by 10 nucleotidesAO356_09535 and AO356_09540 overlap by 4 nucleotidesAO356_09540 and AO356_09545 overlap by 4 nucleotidesAO356_09545 and AO356_09550 are separated by 130 nucleotides AO356_09525: AO356_09525 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data), at 2,156,793 to 2,157,125 _09525 AO356_09530: AO356_09530 - preprotein translocase subunit SecA, at 2,157,150 to 2,157,437 _09530 AO356_09535: AO356_09535 - preprotein translocase, at 2,157,448 to 2,157,867 _09535 AO356_09540: AO356_09540 - twin-arginine protein translocation system subunit TatC, at 2,157,864 to 2,158,661 _09540 AO356_09545: AO356_09545 - 16S rRNA methyltransferase, at 2,158,658 to 2,159,365 _09545 AO356_09550: AO356_09550 - chemotaxis protein, at 2,159,496 to 2,161,412 _09550 Position (kb) 2157 2158 2159Strain fitness (log2 ratio) -1 0 1 2at 2156.877 kb on + strand, within AO356_09525at 2156.877 kb on + strand, within AO356_09525at 2156.878 kb on - strand, within AO356_09525at 2157.055 kb on + strand, within AO356_09525at 2157.383 kb on + strand, within AO356_09530at 2157.446 kb on + strandat 2157.446 kb on + strandat 2157.447 kb on - strandat 2157.807 kb on + strand, within AO356_09535at 2157.843 kb on + strandat 2157.999 kb on + strand, within AO356_09540at 2158.029 kb on + strand, within AO356_09540at 2158.335 kb on + strand, within AO356_09540at 2159.421 kb on + strandat 2159.428 kb on + strandat 2159.463 kb on + strandat 2159.464 kb on - strandat 2159.464 kb on - strandat 2159.464 kb on - strandat 2159.489 kb on + strandat 2159.490 kb on - strandat 2159.530 kb on + strandat 2159.530 kb on + strandat 2159.530 kb on + strandat 2159.530 kb on + strandat 2159.531 kb on - strandat 2159.531 kb on - strandat 2159.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,156,877 + AO356_09525 0.25 +0.2
2,156,877 + AO356_09525 0.25 +1.0
2,156,878 - AO356_09525 0.26 +0.5
2,157,055 + AO356_09525 0.79 -0.1
2,157,383 + AO356_09530 0.81 +0.1
2,157,446 + +0.5
2,157,446 + +0.9
2,157,447 - +0.5
2,157,807 + AO356_09535 0.85 -0.1
2,157,843 + +1.8
2,157,999 + AO356_09540 0.17 +2.5
2,158,029 + AO356_09540 0.21 +2.7
2,158,335 + AO356_09540 0.59 +1.2
2,159,421 + +0.3
2,159,428 + +0.8
2,159,463 + -0.5
2,159,464 - -1.2
2,159,464 - -0.4
2,159,464 - -0.0
2,159,489 + +1.5
2,159,490 - +0.2
2,159,530 + +1.4
2,159,530 + +0.6
2,159,530 + +0.7
2,159,530 + +1.4
2,159,531 - -0.4
2,159,531 - -0.1
2,159,640 - -0.7

Or see this region's nucleotide sequence