Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09425

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09420 and AO356_09425 are separated by 247 nucleotidesAO356_09425 and AO356_09430 are separated by 185 nucleotides AO356_09420: AO356_09420 - peptidase, at 2,132,402 to 2,134,849 _09420 AO356_09425: AO356_09425 - malate dehydrogenase, at 2,135,097 to 2,136,365 _09425 AO356_09430: AO356_09430 - nuclease, at 2,136,551 to 2,137,333 _09430 Position (kb) 2135 2136 2137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2134.163 kb on + strand, within AO356_09420at 2134.163 kb on + strand, within AO356_09420at 2134.163 kb on + strand, within AO356_09420at 2134.164 kb on - strand, within AO356_09420at 2134.164 kb on - strand, within AO356_09420at 2134.509 kb on - strand, within AO356_09420at 2134.520 kb on + strand, within AO356_09420at 2134.520 kb on + strand, within AO356_09420at 2134.521 kb on - strand, within AO356_09420at 2134.521 kb on - strand, within AO356_09420at 2134.521 kb on - strand, within AO356_09420at 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.613 kb on + strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.614 kb on - strandat 2134.733 kb on + strandat 2134.733 kb on + strandat 2134.734 kb on - strandat 2134.734 kb on - strandat 2134.915 kb on - strandat 2135.025 kb on + strandat 2135.025 kb on + strandat 2135.025 kb on + strandat 2135.025 kb on + strandat 2135.025 kb on + strandat 2135.026 kb on - strandat 2135.026 kb on - strandat 2135.026 kb on - strandat 2135.089 kb on - strandat 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.242 kb on + strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.243 kb on - strand, within AO356_09425at 2135.275 kb on + strand, within AO356_09425at 2135.434 kb on + strand, within AO356_09425at 2135.665 kb on + strand, within AO356_09425at 2135.666 kb on - strand, within AO356_09425at 2136.051 kb on + strand, within AO356_09425at 2136.052 kb on - strand, within AO356_09425at 2136.052 kb on - strand, within AO356_09425at 2136.081 kb on + strand, within AO356_09425at 2136.190 kb on + strand, within AO356_09425at 2136.190 kb on + strand, within AO356_09425at 2136.190 kb on + strand, within AO356_09425at 2136.191 kb on - strand, within AO356_09425at 2136.191 kb on - strand, within AO356_09425at 2136.191 kb on - strand, within AO356_09425at 2136.191 kb on - strand, within AO356_09425at 2136.196 kb on + strand, within AO356_09425at 2136.197 kb on - strand, within AO356_09425at 2136.253 kb on + strandat 2136.254 kb on - strandat 2136.254 kb on - strandat 2136.254 kb on - strandat 2136.254 kb on - strandat 2136.335 kb on - strandat 2136.335 kb on - strandat 2136.383 kb on + strandat 2136.384 kb on - strandat 2136.384 kb on - strandat 2136.414 kb on - strandat 2136.414 kb on - strandat 2136.433 kb on + strandat 2136.434 kb on - strandat 2136.434 kb on - strandat 2136.434 kb on - strandat 2136.467 kb on + strandat 2136.467 kb on + strandat 2136.468 kb on - strandat 2136.468 kb on - strandat 2136.473 kb on - strandat 2136.501 kb on + strandat 2136.502 kb on - strandat 2136.502 kb on - strandat 2136.502 kb on - strandat 2137.002 kb on + strand, within AO356_09430at 2137.003 kb on - strandat 2137.003 kb on - strand, within AO356_09430at 2137.018 kb on + strand, within AO356_09430at 2137.018 kb on + strand, within AO356_09430at 2137.019 kb on - strand, within AO356_09430at 2137.019 kb on - strand, within AO356_09430at 2137.026 kb on + strand, within AO356_09430at 2137.026 kb on + strand, within AO356_09430at 2137.026 kb on + strand, within AO356_09430at 2137.026 kb on + strand, within AO356_09430at 2137.027 kb on - strand, within AO356_09430at 2137.055 kb on + strand, within AO356_09430at 2137.055 kb on + strand, within AO356_09430at 2137.055 kb on + strand, within AO356_09430at 2137.056 kb on - strand, within AO356_09430at 2137.056 kb on - strand, within AO356_09430at 2137.056 kb on - strand, within AO356_09430at 2137.056 kb on - strand, within AO356_09430at 2137.200 kb on + strand, within AO356_09430at 2137.200 kb on + strand, within AO356_09430at 2137.201 kb on - strand, within AO356_09430at 2137.201 kb on - strand, within AO356_09430at 2137.201 kb on - strand, within AO356_09430at 2137.201 kb on - strand, within AO356_09430at 2137.201 kb on - strand, within AO356_09430

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,134,163 + AO356_09420 0.72 +0.9
2,134,163 + AO356_09420 0.72 +1.3
2,134,163 + AO356_09420 0.72 -0.8
2,134,164 - AO356_09420 0.72 -0.2
2,134,164 - AO356_09420 0.72 -0.1
2,134,509 - AO356_09420 0.86 -1.3
2,134,520 + AO356_09420 0.87 +0.5
2,134,520 + AO356_09420 0.87 +1.8
2,134,521 - AO356_09420 0.87 +0.3
2,134,521 - AO356_09420 0.87 -0.2
2,134,521 - AO356_09420 0.87 -0.9
2,134,613 + +0.8
2,134,613 + -1.0
2,134,613 + -0.2
2,134,613 + +1.3
2,134,613 + +0.5
2,134,613 + +0.3
2,134,613 + -0.4
2,134,613 + -0.1
2,134,613 + +0.4
2,134,614 - -0.2
2,134,614 - +0.0
2,134,614 - -1.8
2,134,614 - +0.2
2,134,614 - +1.3
2,134,614 - -0.2
2,134,614 - -0.2
2,134,614 - -0.2
2,134,614 - -2.1
2,134,614 - -0.7
2,134,614 - -0.1
2,134,614 - -1.5
2,134,614 - +0.3
2,134,733 + +1.5
2,134,733 + -0.7
2,134,734 - +0.4
2,134,734 - +0.4
2,134,915 - +0.1
2,135,025 + -0.5
2,135,025 + -0.6
2,135,025 + +0.1
2,135,025 + -0.2
2,135,025 + -0.1
2,135,026 - +0.8
2,135,026 - -1.0
2,135,026 - -0.2
2,135,089 - -0.1
2,135,242 + AO356_09425 0.11 -1.2
2,135,242 + AO356_09425 0.11 -0.4
2,135,242 + AO356_09425 0.11 +0.4
2,135,242 + AO356_09425 0.11 -0.5
2,135,242 + AO356_09425 0.11 -0.6
2,135,242 + AO356_09425 0.11 -0.1
2,135,242 + AO356_09425 0.11 -1.8
2,135,242 + AO356_09425 0.11 -0.1
2,135,242 + AO356_09425 0.11 -0.1
2,135,242 + AO356_09425 0.11 -1.0
2,135,242 + AO356_09425 0.11 -0.8
2,135,243 - AO356_09425 0.12 +0.3
2,135,243 - AO356_09425 0.12 -1.5
2,135,243 - AO356_09425 0.12 -1.5
2,135,243 - AO356_09425 0.12 +0.5
2,135,243 - AO356_09425 0.12 +0.2
2,135,243 - AO356_09425 0.12 -1.3
2,135,243 - AO356_09425 0.12 -0.5
2,135,243 - AO356_09425 0.12 +2.1
2,135,243 - AO356_09425 0.12 -0.1
2,135,243 - AO356_09425 0.12 -1.1
2,135,275 + AO356_09425 0.14 -1.0
2,135,434 + AO356_09425 0.27 -2.0
2,135,665 + AO356_09425 0.45 +0.5
2,135,666 - AO356_09425 0.45 -0.6
2,136,051 + AO356_09425 0.75 -1.8
2,136,052 - AO356_09425 0.75 +0.3
2,136,052 - AO356_09425 0.75 -0.1
2,136,081 + AO356_09425 0.78 -0.1
2,136,190 + AO356_09425 0.86 -0.2
2,136,190 + AO356_09425 0.86 +0.2
2,136,190 + AO356_09425 0.86 -0.2
2,136,191 - AO356_09425 0.86 -1.8
2,136,191 - AO356_09425 0.86 -1.3
2,136,191 - AO356_09425 0.86 -0.6
2,136,191 - AO356_09425 0.86 +0.9
2,136,196 + AO356_09425 0.87 -3.3
2,136,197 - AO356_09425 0.87 -0.2
2,136,253 + -0.5
2,136,254 - +0.2
2,136,254 - +1.1
2,136,254 - -0.4
2,136,254 - -0.5
2,136,335 - -0.3
2,136,335 - -1.1
2,136,383 + -0.8
2,136,384 - -0.3
2,136,384 - -0.1
2,136,414 - -0.6
2,136,414 - +0.3
2,136,433 + -0.2
2,136,434 - -1.0
2,136,434 - -0.4
2,136,434 - +0.2
2,136,467 + -0.5
2,136,467 + +0.4
2,136,468 - -0.4
2,136,468 - +0.1
2,136,473 - +0.3
2,136,501 + -0.3
2,136,502 - -0.5
2,136,502 - -0.3
2,136,502 - +0.2
2,137,002 + AO356_09430 0.58 -1.4
2,137,003 - -0.1
2,137,003 - AO356_09430 0.58 -1.0
2,137,018 + AO356_09430 0.60 -0.4
2,137,018 + AO356_09430 0.60 -0.1
2,137,019 - AO356_09430 0.60 -0.6
2,137,019 - AO356_09430 0.60 -0.8
2,137,026 + AO356_09430 0.61 +0.5
2,137,026 + AO356_09430 0.61 -0.9
2,137,026 + AO356_09430 0.61 -0.9
2,137,026 + AO356_09430 0.61 -0.4
2,137,027 - AO356_09430 0.61 -0.2
2,137,055 + AO356_09430 0.64 -0.2
2,137,055 + AO356_09430 0.64 +0.2
2,137,055 + AO356_09430 0.64 +0.3
2,137,056 - AO356_09430 0.64 -0.5
2,137,056 - AO356_09430 0.64 -0.2
2,137,056 - AO356_09430 0.64 -0.6
2,137,056 - AO356_09430 0.64 +0.1
2,137,200 + AO356_09430 0.83 +1.4
2,137,200 + AO356_09430 0.83 +0.4
2,137,201 - AO356_09430 0.83 +0.2
2,137,201 - AO356_09430 0.83 +0.2
2,137,201 - AO356_09430 0.83 -1.1
2,137,201 - AO356_09430 0.83 +0.9
2,137,201 - AO356_09430 0.83 -0.3

Or see this region's nucleotide sequence