Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09165

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09160 and AO356_09165 are separated by 170 nucleotidesAO356_09165 and AO356_09170 overlap by 4 nucleotidesAO356_09170 and AO356_09175 overlap by 20 nucleotides AO356_09160: AO356_09160 - AMP-binding protein, at 2,071,062 to 2,072,741 _09160 AO356_09165: AO356_09165 - glycosyl transferase, at 2,072,912 to 2,073,646 _09165 AO356_09170: AO356_09170 - glycosyl transferase, at 2,073,643 to 2,074,587 _09170 AO356_09175: AO356_09175 - histidine ammonia-lyase, at 2,074,568 to 2,076,112 _09175 Position (kb) 2072 2073 2074Strain fitness (log2 ratio) -1 0 1 2at 2071.975 kb on - strand, within AO356_09160at 2072.063 kb on + strand, within AO356_09160at 2072.472 kb on + strand, within AO356_09160at 2072.473 kb on - strand, within AO356_09160at 2072.670 kb on + strandat 2072.670 kb on + strandat 2072.671 kb on - strandat 2072.671 kb on - strandat 2072.739 kb on + strandat 2072.740 kb on - strandat 2072.740 kb on - strandat 2072.740 kb on - strandat 2072.819 kb on - strandat 2072.819 kb on - strandat 2072.856 kb on + strandat 2072.857 kb on - strandat 2072.857 kb on - strandat 2072.911 kb on + strandat 2072.911 kb on + strandat 2072.911 kb on + strandat 2072.912 kb on - strandat 2072.912 kb on - strandat 2072.912 kb on - strandat 2072.942 kb on + strandat 2072.943 kb on - strandat 2073.270 kb on - strand, within AO356_09165at 2073.299 kb on + strand, within AO356_09165at 2073.308 kb on + strand, within AO356_09165at 2073.309 kb on - strand, within AO356_09165at 2073.383 kb on + strand, within AO356_09165at 2073.766 kb on + strand, within AO356_09170at 2073.767 kb on - strand, within AO356_09170at 2073.781 kb on + strand, within AO356_09170at 2073.826 kb on + strand, within AO356_09170at 2073.989 kb on + strand, within AO356_09170at 2074.493 kb on - strandat 2074.513 kb on + strandat 2074.513 kb on + strandat 2074.513 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,071,975 - AO356_09160 0.54 -0.9
2,072,063 + AO356_09160 0.60 +1.5
2,072,472 + AO356_09160 0.84 -0.5
2,072,473 - AO356_09160 0.84 -0.7
2,072,670 + +0.8
2,072,670 + +0.4
2,072,671 - -0.7
2,072,671 - -0.4
2,072,739 + +1.9
2,072,740 - +0.6
2,072,740 - +0.3
2,072,740 - -0.1
2,072,819 - +1.3
2,072,819 - +1.0
2,072,856 + +0.5
2,072,857 - -0.8
2,072,857 - +0.7
2,072,911 + -0.9
2,072,911 + +0.3
2,072,911 + +0.4
2,072,912 - +1.5
2,072,912 - +0.3
2,072,912 - +0.4
2,072,942 + -0.1
2,072,943 - -0.2
2,073,270 - AO356_09165 0.49 +0.9
2,073,299 + AO356_09165 0.53 +0.1
2,073,308 + AO356_09165 0.54 +0.4
2,073,309 - AO356_09165 0.54 +0.8
2,073,383 + AO356_09165 0.64 +1.0
2,073,766 + AO356_09170 0.13 -0.7
2,073,767 - AO356_09170 0.13 -1.4
2,073,781 + AO356_09170 0.15 +0.3
2,073,826 + AO356_09170 0.19 -0.4
2,073,989 + AO356_09170 0.37 +1.0
2,074,493 - -0.1
2,074,513 + -0.6
2,074,513 + -0.3
2,074,513 + -0.1

Or see this region's nucleotide sequence