Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09120

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09110 and AO356_09115 are separated by 27 nucleotidesAO356_09115 and AO356_09120 are separated by 37 nucleotidesAO356_09120 and AO356_09125 are separated by 345 nucleotides AO356_09110: AO356_09110 - MFS transporter, at 2,062,371 to 2,063,711 _09110 AO356_09115: AO356_09115 - polysaccharide deacetylase, at 2,063,739 to 2,064,620 _09115 AO356_09120: AO356_09120 - amidase, at 2,064,658 to 2,066,019 _09120 AO356_09125: AO356_09125 - GntR family transcriptional regulator, at 2,066,365 to 2,067,366 _09125 Position (kb) 2064 2065 2066 2067Strain fitness (log2 ratio) -2 -1 0 1 2at 2063.701 kb on + strandat 2063.701 kb on + strandat 2063.702 kb on - strandat 2063.702 kb on - strandat 2063.728 kb on + strandat 2063.729 kb on - strandat 2063.920 kb on + strand, within AO356_09115at 2063.921 kb on - strand, within AO356_09115at 2064.031 kb on + strand, within AO356_09115at 2064.032 kb on - strand, within AO356_09115at 2064.112 kb on + strand, within AO356_09115at 2064.112 kb on + strand, within AO356_09115at 2064.112 kb on + strand, within AO356_09115at 2064.148 kb on + strand, within AO356_09115at 2064.148 kb on + strand, within AO356_09115at 2064.148 kb on + strand, within AO356_09115at 2064.148 kb on + strand, within AO356_09115at 2064.148 kb on + strand, within AO356_09115at 2064.148 kb on + strand, within AO356_09115at 2064.148 kb on + strand, within AO356_09115at 2064.149 kb on - strand, within AO356_09115at 2064.149 kb on - strand, within AO356_09115at 2064.151 kb on + strand, within AO356_09115at 2064.152 kb on - strand, within AO356_09115at 2064.152 kb on - strand, within AO356_09115at 2064.152 kb on - strand, within AO356_09115at 2064.187 kb on + strand, within AO356_09115at 2064.187 kb on + strand, within AO356_09115at 2064.187 kb on + strand, within AO356_09115at 2064.187 kb on + strand, within AO356_09115at 2064.188 kb on - strand, within AO356_09115at 2064.253 kb on + strand, within AO356_09115at 2064.254 kb on - strand, within AO356_09115at 2064.254 kb on - strand, within AO356_09115at 2064.302 kb on + strand, within AO356_09115at 2064.357 kb on - strand, within AO356_09115at 2064.359 kb on - strand, within AO356_09115at 2064.440 kb on + strand, within AO356_09115at 2064.440 kb on + strand, within AO356_09115at 2064.441 kb on - strand, within AO356_09115at 2064.528 kb on - strand, within AO356_09115at 2064.528 kb on - strand, within AO356_09115at 2064.608 kb on + strandat 2064.608 kb on + strandat 2064.608 kb on + strandat 2064.614 kb on + strandat 2064.974 kb on + strand, within AO356_09120at 2064.975 kb on - strand, within AO356_09120at 2064.975 kb on - strand, within AO356_09120at 2064.975 kb on - strand, within AO356_09120at 2065.408 kb on + strand, within AO356_09120at 2065.408 kb on + strand, within AO356_09120at 2065.409 kb on - strand, within AO356_09120at 2066.044 kb on + strandat 2066.089 kb on + strandat 2066.089 kb on + strandat 2066.089 kb on + strandat 2066.141 kb on - strandat 2066.152 kb on + strandat 2066.152 kb on + strandat 2066.152 kb on + strandat 2066.153 kb on - strandat 2066.153 kb on - strandat 2066.153 kb on - strandat 2066.153 kb on - strandat 2066.205 kb on + strandat 2066.212 kb on - strandat 2066.212 kb on - strandat 2066.216 kb on - strandat 2066.216 kb on - strandat 2066.216 kb on - strandat 2066.216 kb on - strandat 2066.216 kb on - strandat 2066.216 kb on - strandat 2066.216 kb on - strandat 2066.220 kb on + strandat 2066.221 kb on - strandat 2066.221 kb on - strandat 2066.243 kb on + strandat 2066.243 kb on + strandat 2066.243 kb on + strandat 2066.243 kb on + strandat 2066.243 kb on + strandat 2066.243 kb on + strandat 2066.243 kb on + strandat 2066.244 kb on - strandat 2066.244 kb on - strandat 2066.251 kb on + strandat 2066.251 kb on + strandat 2066.251 kb on + strandat 2066.251 kb on + strandat 2066.251 kb on + strandat 2066.252 kb on - strandat 2066.252 kb on - strandat 2066.257 kb on + strandat 2066.426 kb on + strandat 2066.426 kb on + strandat 2066.426 kb on + strandat 2066.427 kb on - strandat 2066.427 kb on - strandat 2066.474 kb on + strand, within AO356_09125at 2066.584 kb on + strand, within AO356_09125at 2066.739 kb on + strand, within AO356_09125at 2066.739 kb on + strand, within AO356_09125at 2066.739 kb on + strand, within AO356_09125at 2066.739 kb on + strand, within AO356_09125at 2066.739 kb on + strand, within AO356_09125at 2066.740 kb on - strand, within AO356_09125at 2066.860 kb on + strand, within AO356_09125at 2066.861 kb on - strand, within AO356_09125at 2066.861 kb on - strand, within AO356_09125at 2066.861 kb on - strand, within AO356_09125at 2066.911 kb on + strand, within AO356_09125at 2066.911 kb on + strand, within AO356_09125at 2066.912 kb on - strand, within AO356_09125at 2066.945 kb on + strand, within AO356_09125at 2066.946 kb on - strand, within AO356_09125

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,063,701 + -0.4
2,063,701 + -0.1
2,063,702 - +1.5
2,063,702 - +0.2
2,063,728 + -0.0
2,063,729 - -0.1
2,063,920 + AO356_09115 0.21 +2.1
2,063,921 - AO356_09115 0.21 +0.4
2,064,031 + AO356_09115 0.33 +0.3
2,064,032 - AO356_09115 0.33 +0.6
2,064,112 + AO356_09115 0.42 +0.6
2,064,112 + AO356_09115 0.42 -0.4
2,064,112 + AO356_09115 0.42 -0.0
2,064,148 + AO356_09115 0.46 +0.1
2,064,148 + AO356_09115 0.46 +1.1
2,064,148 + AO356_09115 0.46 +0.6
2,064,148 + AO356_09115 0.46 -0.0
2,064,148 + AO356_09115 0.46 -1.0
2,064,148 + AO356_09115 0.46 +0.2
2,064,148 + AO356_09115 0.46 -0.6
2,064,149 - AO356_09115 0.46 +0.1
2,064,149 - AO356_09115 0.46 +0.4
2,064,151 + AO356_09115 0.47 +0.4
2,064,152 - AO356_09115 0.47 -0.8
2,064,152 - AO356_09115 0.47 +0.2
2,064,152 - AO356_09115 0.47 -0.4
2,064,187 + AO356_09115 0.51 -0.9
2,064,187 + AO356_09115 0.51 -0.0
2,064,187 + AO356_09115 0.51 +0.1
2,064,187 + AO356_09115 0.51 -0.0
2,064,188 - AO356_09115 0.51 -0.2
2,064,253 + AO356_09115 0.58 -0.2
2,064,254 - AO356_09115 0.58 +0.2
2,064,254 - AO356_09115 0.58 +0.7
2,064,302 + AO356_09115 0.64 +0.3
2,064,357 - AO356_09115 0.70 +0.1
2,064,359 - AO356_09115 0.70 +0.6
2,064,440 + AO356_09115 0.79 -1.1
2,064,440 + AO356_09115 0.79 +0.9
2,064,441 - AO356_09115 0.80 -0.3
2,064,528 - AO356_09115 0.89 -1.9
2,064,528 - AO356_09115 0.89 -0.5
2,064,608 + -0.5
2,064,608 + +0.0
2,064,608 + +0.7
2,064,614 + +0.3
2,064,974 + AO356_09120 0.23 +0.8
2,064,975 - AO356_09120 0.23 +1.1
2,064,975 - AO356_09120 0.23 -0.4
2,064,975 - AO356_09120 0.23 +1.2
2,065,408 + AO356_09120 0.55 -0.6
2,065,408 + AO356_09120 0.55 +0.7
2,065,409 - AO356_09120 0.55 +0.6
2,066,044 + +0.2
2,066,089 + +0.7
2,066,089 + +0.4
2,066,089 + +0.8
2,066,141 - +0.5
2,066,152 + -0.3
2,066,152 + +0.6
2,066,152 + +0.1
2,066,153 - +1.7
2,066,153 - +0.7
2,066,153 - -0.4
2,066,153 - +1.0
2,066,205 + -0.1
2,066,212 - +1.0
2,066,212 - +0.1
2,066,216 - +0.8
2,066,216 - +0.4
2,066,216 - -0.4
2,066,216 - -1.4
2,066,216 - -0.1
2,066,216 - -0.2
2,066,216 - -0.3
2,066,220 + +0.6
2,066,221 - +0.3
2,066,221 - +0.7
2,066,243 + +0.4
2,066,243 + -0.1
2,066,243 + -0.4
2,066,243 + +0.7
2,066,243 + -0.2
2,066,243 + +0.0
2,066,243 + +0.2
2,066,244 - -0.0
2,066,244 - +1.0
2,066,251 + -0.0
2,066,251 + +0.2
2,066,251 + +0.2
2,066,251 + -0.3
2,066,251 + +0.4
2,066,252 - -0.3
2,066,252 - -0.4
2,066,257 + +0.7
2,066,426 + -0.4
2,066,426 + -0.0
2,066,426 + +0.9
2,066,427 - -1.7
2,066,427 - +0.1
2,066,474 + AO356_09125 0.11 +1.7
2,066,584 + AO356_09125 0.22 -0.2
2,066,739 + AO356_09125 0.37 +1.6
2,066,739 + AO356_09125 0.37 -0.1
2,066,739 + AO356_09125 0.37 -0.3
2,066,739 + AO356_09125 0.37 -0.1
2,066,739 + AO356_09125 0.37 -0.8
2,066,740 - AO356_09125 0.37 -1.2
2,066,860 + AO356_09125 0.49 +1.1
2,066,861 - AO356_09125 0.50 -0.7
2,066,861 - AO356_09125 0.50 -0.7
2,066,861 - AO356_09125 0.50 -0.2
2,066,911 + AO356_09125 0.54 -0.5
2,066,911 + AO356_09125 0.54 -0.3
2,066,912 - AO356_09125 0.55 -0.3
2,066,945 + AO356_09125 0.58 -0.7
2,066,946 - AO356_09125 0.58 +1.5

Or see this region's nucleotide sequence