Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09055

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09050 and AO356_09055 are separated by 215 nucleotidesAO356_09055 and AO356_09060 overlap by 4 nucleotidesAO356_09060 and AO356_09065 are separated by 165 nucleotides AO356_09050: AO356_09050 - hypothetical protein, at 2,052,844 to 2,054,307 _09050 AO356_09055: AO356_09055 - transcriptional regulator, at 2,054,523 to 2,054,924 _09055 AO356_09060: AO356_09060 - hypothetical protein, at 2,054,921 to 2,055,217 _09060 AO356_09065: AO356_09065 - hypothetical protein, at 2,055,383 to 2,055,661 _09065 Position (kb) 2054 2055Strain fitness (log2 ratio) -2 -1 0 1 2at 2053.567 kb on + strand, within AO356_09050at 2053.567 kb on + strand, within AO356_09050at 2053.568 kb on - strand, within AO356_09050at 2053.568 kb on - strand, within AO356_09050at 2053.568 kb on - strand, within AO356_09050at 2053.703 kb on - strand, within AO356_09050at 2053.810 kb on + strand, within AO356_09050at 2053.810 kb on + strand, within AO356_09050at 2053.810 kb on + strand, within AO356_09050at 2053.810 kb on + strand, within AO356_09050at 2053.811 kb on - strand, within AO356_09050at 2053.811 kb on - strand, within AO356_09050at 2053.811 kb on - strand, within AO356_09050at 2053.823 kb on - strand, within AO356_09050at 2053.823 kb on - strand, within AO356_09050at 2053.835 kb on - strand, within AO356_09050at 2053.939 kb on + strand, within AO356_09050at 2053.940 kb on - strand, within AO356_09050at 2053.940 kb on - strand, within AO356_09050at 2054.047 kb on + strand, within AO356_09050at 2054.047 kb on + strand, within AO356_09050at 2054.047 kb on + strand, within AO356_09050at 2054.047 kb on + strand, within AO356_09050at 2054.047 kb on + strand, within AO356_09050at 2054.047 kb on + strand, within AO356_09050at 2054.047 kb on + strand, within AO356_09050at 2054.048 kb on - strand, within AO356_09050at 2054.125 kb on + strand, within AO356_09050at 2054.125 kb on + strand, within AO356_09050at 2054.125 kb on + strand, within AO356_09050at 2054.125 kb on + strand, within AO356_09050at 2054.125 kb on + strand, within AO356_09050at 2054.126 kb on - strand, within AO356_09050at 2054.126 kb on - strand, within AO356_09050at 2054.126 kb on - strand, within AO356_09050at 2054.133 kb on - strand, within AO356_09050at 2054.140 kb on + strand, within AO356_09050at 2054.140 kb on + strand, within AO356_09050at 2054.140 kb on + strand, within AO356_09050at 2054.141 kb on - strand, within AO356_09050at 2054.141 kb on - strand, within AO356_09050at 2054.182 kb on + strandat 2054.252 kb on - strandat 2054.252 kb on - strandat 2054.252 kb on - strandat 2054.347 kb on + strandat 2054.347 kb on + strandat 2054.347 kb on + strandat 2054.347 kb on + strandat 2054.347 kb on + strandat 2054.347 kb on + strandat 2054.347 kb on + strandat 2054.348 kb on - strandat 2054.348 kb on - strandat 2054.348 kb on - strandat 2054.348 kb on - strandat 2054.442 kb on + strandat 2054.442 kb on + strandat 2054.443 kb on - strandat 2054.472 kb on - strandat 2054.518 kb on - strandat 2054.598 kb on - strand, within AO356_09055at 2054.607 kb on + strand, within AO356_09055at 2054.608 kb on - strand, within AO356_09055at 2054.608 kb on - strand, within AO356_09055at 2054.608 kb on - strand, within AO356_09055at 2054.760 kb on - strand, within AO356_09055at 2054.842 kb on + strand, within AO356_09055at 2054.842 kb on + strand, within AO356_09055at 2054.842 kb on + strand, within AO356_09055at 2054.843 kb on - strand, within AO356_09055at 2054.843 kb on - strand, within AO356_09055at 2054.843 kb on - strand, within AO356_09055at 2054.955 kb on + strand, within AO356_09060at 2054.955 kb on + strand, within AO356_09060at 2054.983 kb on + strand, within AO356_09060at 2054.983 kb on + strand, within AO356_09060at 2054.983 kb on + strand, within AO356_09060at 2054.984 kb on - strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2055.087 kb on - strand, within AO356_09060at 2055.252 kb on + strandat 2055.252 kb on + strandat 2055.294 kb on + strandat 2055.306 kb on + strandat 2055.307 kb on - strandat 2055.328 kb on + strandat 2055.328 kb on + strandat 2055.329 kb on - strandat 2055.329 kb on - strandat 2055.329 kb on - strandat 2055.345 kb on - strandat 2055.371 kb on + strandat 2055.371 kb on + strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.549 kb on + strand, within AO356_09065at 2055.550 kb on - strand, within AO356_09065at 2055.550 kb on - strand, within AO356_09065at 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.771 kb on + strandat 2055.772 kb on - strandat 2055.772 kb on - strandat 2055.841 kb on + strandat 2055.909 kb on + strandat 2055.909 kb on + strandat 2055.910 kb on - strandat 2055.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,053,567 + AO356_09050 0.49 -0.5
2,053,567 + AO356_09050 0.49 +0.2
2,053,568 - AO356_09050 0.49 +0.3
2,053,568 - AO356_09050 0.49 -1.2
2,053,568 - AO356_09050 0.49 -0.3
2,053,703 - AO356_09050 0.59 +0.1
2,053,810 + AO356_09050 0.66 +0.5
2,053,810 + AO356_09050 0.66 -1.5
2,053,810 + AO356_09050 0.66 -0.2
2,053,810 + AO356_09050 0.66 +0.1
2,053,811 - AO356_09050 0.66 +0.5
2,053,811 - AO356_09050 0.66 +0.7
2,053,811 - AO356_09050 0.66 +0.5
2,053,823 - AO356_09050 0.67 +0.2
2,053,823 - AO356_09050 0.67 -1.3
2,053,835 - AO356_09050 0.68 -0.9
2,053,939 + AO356_09050 0.75 +0.6
2,053,940 - AO356_09050 0.75 -0.3
2,053,940 - AO356_09050 0.75 +0.5
2,054,047 + AO356_09050 0.82 -0.6
2,054,047 + AO356_09050 0.82 +1.5
2,054,047 + AO356_09050 0.82 -0.1
2,054,047 + AO356_09050 0.82 -0.0
2,054,047 + AO356_09050 0.82 +0.3
2,054,047 + AO356_09050 0.82 -0.0
2,054,047 + AO356_09050 0.82 +0.0
2,054,048 - AO356_09050 0.82 +0.6
2,054,125 + AO356_09050 0.88 +0.3
2,054,125 + AO356_09050 0.88 +0.4
2,054,125 + AO356_09050 0.88 +0.5
2,054,125 + AO356_09050 0.88 -0.0
2,054,125 + AO356_09050 0.88 +0.0
2,054,126 - AO356_09050 0.88 +0.0
2,054,126 - AO356_09050 0.88 +0.3
2,054,126 - AO356_09050 0.88 +0.3
2,054,133 - AO356_09050 0.88 -0.3
2,054,140 + AO356_09050 0.89 +0.2
2,054,140 + AO356_09050 0.89 +0.1
2,054,140 + AO356_09050 0.89 -0.3
2,054,141 - AO356_09050 0.89 -0.5
2,054,141 - AO356_09050 0.89 -0.7
2,054,182 + +0.4
2,054,252 - -1.3
2,054,252 - -1.3
2,054,252 - +0.8
2,054,347 + -0.0
2,054,347 + +0.7
2,054,347 + +0.7
2,054,347 + -0.7
2,054,347 + -0.3
2,054,347 + -0.1
2,054,347 + +0.8
2,054,348 - +0.8
2,054,348 - +1.2
2,054,348 - +0.5
2,054,348 - -0.5
2,054,442 + +0.9
2,054,442 + +0.2
2,054,443 - +0.3
2,054,472 - +0.1
2,054,518 - +0.3
2,054,598 - AO356_09055 0.19 -0.5
2,054,607 + AO356_09055 0.21 +0.6
2,054,608 - AO356_09055 0.21 +1.2
2,054,608 - AO356_09055 0.21 +1.3
2,054,608 - AO356_09055 0.21 -0.7
2,054,760 - AO356_09055 0.59 +0.9
2,054,842 + AO356_09055 0.79 +0.6
2,054,842 + AO356_09055 0.79 +1.7
2,054,842 + AO356_09055 0.79 +1.0
2,054,843 - AO356_09055 0.80 -0.0
2,054,843 - AO356_09055 0.80 +0.1
2,054,843 - AO356_09055 0.80 +0.1
2,054,955 + AO356_09060 0.11 -0.1
2,054,955 + AO356_09060 0.11 -0.7
2,054,983 + AO356_09060 0.21 +0.1
2,054,983 + AO356_09060 0.21 -0.3
2,054,983 + AO356_09060 0.21 +1.5
2,054,984 - AO356_09060 0.21 -0.4
2,054,985 + AO356_09060 0.22 -0.1
2,054,985 + AO356_09060 0.22 -0.1
2,054,985 + AO356_09060 0.22 +0.1
2,054,985 + AO356_09060 0.22 +0.8
2,054,985 + AO356_09060 0.22 -0.1
2,054,985 + AO356_09060 0.22 -0.2
2,054,985 + AO356_09060 0.22 -0.4
2,054,985 + AO356_09060 0.22 +0.5
2,054,985 + AO356_09060 0.22 +0.1
2,054,985 + AO356_09060 0.22 -0.4
2,054,985 + AO356_09060 0.22 -1.0
2,054,985 + AO356_09060 0.22 -0.0
2,054,986 - AO356_09060 0.22 +0.3
2,054,986 - AO356_09060 0.22 -1.1
2,054,986 - AO356_09060 0.22 -0.5
2,054,986 - AO356_09060 0.22 -1.7
2,054,986 - AO356_09060 0.22 -2.6
2,054,986 - AO356_09060 0.22 +0.2
2,054,986 - AO356_09060 0.22 +0.3
2,054,986 - AO356_09060 0.22 -0.6
2,055,087 - AO356_09060 0.56 +0.1
2,055,252 + -0.4
2,055,252 + +1.2
2,055,294 + +0.1
2,055,306 + -0.2
2,055,307 - -1.0
2,055,328 + +0.1
2,055,328 + -0.8
2,055,329 - +1.1
2,055,329 - -1.2
2,055,329 - -0.5
2,055,345 - +0.0
2,055,371 + +0.1
2,055,371 + -0.6
2,055,372 - +0.5
2,055,372 - -0.6
2,055,372 - +0.2
2,055,372 - +0.6
2,055,372 - +0.9
2,055,372 - +0.9
2,055,372 - +1.1
2,055,549 + AO356_09065 0.59 +0.3
2,055,550 - AO356_09065 0.60 +0.0
2,055,550 - AO356_09065 0.60 +0.4
2,055,685 + +0.3
2,055,685 + +0.5
2,055,685 + -1.6
2,055,685 + -0.1
2,055,685 + -0.4
2,055,685 + -0.4
2,055,686 - -0.1
2,055,686 - +1.4
2,055,686 - -0.2
2,055,686 - -0.2
2,055,771 + +0.1
2,055,772 - +0.3
2,055,772 - +0.3
2,055,841 + -0.0
2,055,909 + +1.8
2,055,909 + -0.4
2,055,910 - -0.2
2,055,910 - +0.6

Or see this region's nucleotide sequence