Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08895

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_08890 and AO356_08895 are separated by 84 nucleotidesAO356_08895 and AO356_08900 are separated by 8 nucleotidesAO356_08900 and AO356_08905 overlap by 1 nucleotides AO356_08890: AO356_08890 - glycosyltransferase, at 2,003,835 to 2,004,791 _08890 AO356_08895: AO356_08895 - GlcNAc-PI de-N-acetylase, at 2,004,876 to 2,006,276 _08895 AO356_08900: AO356_08900 - acetyltransferase, at 2,006,285 to 2,007,181 _08900 AO356_08905: AO356_08905 - glycosyl transferase, at 2,007,181 to 2,008,311 _08905 Position (kb) 2004 2005 2006 2007Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2004.049 kb on + strand, within AO356_08890at 2004.049 kb on + strand, within AO356_08890at 2004.050 kb on - strand, within AO356_08890at 2004.062 kb on + strand, within AO356_08890at 2004.062 kb on + strand, within AO356_08890at 2004.063 kb on - strand, within AO356_08890at 2004.063 kb on - strand, within AO356_08890at 2004.063 kb on - strand, within AO356_08890at 2004.063 kb on - strand, within AO356_08890at 2004.063 kb on - strand, within AO356_08890at 2004.223 kb on + strand, within AO356_08890at 2004.223 kb on + strand, within AO356_08890at 2004.303 kb on - strand, within AO356_08890at 2004.304 kb on + strand, within AO356_08890at 2004.304 kb on + strand, within AO356_08890at 2004.304 kb on + strand, within AO356_08890at 2004.304 kb on + strand, within AO356_08890at 2004.304 kb on + strand, within AO356_08890at 2004.304 kb on + strand, within AO356_08890at 2004.305 kb on - strand, within AO356_08890at 2004.305 kb on - strand, within AO356_08890at 2004.305 kb on - strand, within AO356_08890at 2004.305 kb on - strand, within AO356_08890at 2004.305 kb on - strand, within AO356_08890at 2004.385 kb on + strand, within AO356_08890at 2004.403 kb on - strand, within AO356_08890at 2004.485 kb on - strand, within AO356_08890at 2004.508 kb on + strand, within AO356_08890at 2004.509 kb on - strand, within AO356_08890at 2004.509 kb on - strand, within AO356_08890at 2004.523 kb on + strand, within AO356_08890at 2004.523 kb on + strand, within AO356_08890at 2004.524 kb on - strand, within AO356_08890at 2004.524 kb on - strand, within AO356_08890at 2004.524 kb on - strand, within AO356_08890at 2004.524 kb on - strand, within AO356_08890at 2004.532 kb on + strand, within AO356_08890at 2004.618 kb on + strand, within AO356_08890at 2004.632 kb on - strand, within AO356_08890at 2004.639 kb on + strand, within AO356_08890at 2004.639 kb on + strand, within AO356_08890at 2004.639 kb on + strand, within AO356_08890at 2004.640 kb on - strand, within AO356_08890at 2004.640 kb on - strand, within AO356_08890at 2004.662 kb on - strand, within AO356_08890at 2004.736 kb on + strandat 2004.736 kb on + strandat 2004.737 kb on - strandat 2004.737 kb on - strandat 2004.737 kb on - strandat 2004.821 kb on + strandat 2004.822 kb on - strandat 2004.822 kb on - strandat 2004.822 kb on - strandat 2004.822 kb on - strandat 2004.822 kb on - strandat 2004.822 kb on - strandat 2004.822 kb on - strandat 2004.822 kb on - strandat 2004.825 kb on + strandat 2004.826 kb on - strandat 2004.826 kb on - strandat 2004.877 kb on + strandat 2004.877 kb on + strandat 2004.877 kb on + strandat 2004.878 kb on - strandat 2004.878 kb on - strandat 2004.937 kb on + strandat 2005.291 kb on - strandat 2005.687 kb on + strand, within AO356_08895at 2006.101 kb on + strand, within AO356_08895at 2006.217 kb on + strandat 2006.218 kb on - strandat 2006.289 kb on - strandat 2006.289 kb on - strandat 2006.328 kb on + strandat 2006.844 kb on + strand, within AO356_08900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
2,004,049 + AO356_08890 0.22 -0.8
2,004,049 + AO356_08890 0.22 -0.1
2,004,050 - AO356_08890 0.22 -1.8
2,004,062 + AO356_08890 0.24 -0.5
2,004,062 + AO356_08890 0.24 -0.8
2,004,063 - AO356_08890 0.24 -2.4
2,004,063 - AO356_08890 0.24 -2.0
2,004,063 - AO356_08890 0.24 -1.7
2,004,063 - AO356_08890 0.24 -1.8
2,004,063 - AO356_08890 0.24 -3.3
2,004,223 + AO356_08890 0.41 -1.7
2,004,223 + AO356_08890 0.41 -1.1
2,004,303 - AO356_08890 0.49 -1.7
2,004,304 + AO356_08890 0.49 -1.9
2,004,304 + AO356_08890 0.49 +0.9
2,004,304 + AO356_08890 0.49 -1.5
2,004,304 + AO356_08890 0.49 -0.5
2,004,304 + AO356_08890 0.49 -1.7
2,004,304 + AO356_08890 0.49 -0.8
2,004,305 - AO356_08890 0.49 -2.9
2,004,305 - AO356_08890 0.49 -2.1
2,004,305 - AO356_08890 0.49 +0.5
2,004,305 - AO356_08890 0.49 -2.8
2,004,305 - AO356_08890 0.49 -2.2
2,004,385 + AO356_08890 0.57 -1.3
2,004,403 - AO356_08890 0.59 -0.7
2,004,485 - AO356_08890 0.68 -0.7
2,004,508 + AO356_08890 0.70 -2.1
2,004,509 - AO356_08890 0.70 -1.5
2,004,509 - AO356_08890 0.70 -1.5
2,004,523 + AO356_08890 0.72 -1.7
2,004,523 + AO356_08890 0.72 -2.5
2,004,524 - AO356_08890 0.72 -2.0
2,004,524 - AO356_08890 0.72 -1.3
2,004,524 - AO356_08890 0.72 -1.5
2,004,524 - AO356_08890 0.72 -2.7
2,004,532 + AO356_08890 0.73 -2.1
2,004,618 + AO356_08890 0.82 -2.4
2,004,632 - AO356_08890 0.83 -1.5
2,004,639 + AO356_08890 0.84 -0.4
2,004,639 + AO356_08890 0.84 -0.1
2,004,639 + AO356_08890 0.84 -1.3
2,004,640 - AO356_08890 0.84 -2.9
2,004,640 - AO356_08890 0.84 -3.5
2,004,662 - AO356_08890 0.86 -0.5
2,004,736 + -2.2
2,004,736 + -2.2
2,004,737 - -1.1
2,004,737 - -1.3
2,004,737 - -0.8
2,004,821 + -0.9
2,004,822 - +0.9
2,004,822 - -0.2
2,004,822 - +0.2
2,004,822 - -0.1
2,004,822 - +0.3
2,004,822 - -0.3
2,004,822 - +0.9
2,004,822 - -0.3
2,004,825 + -0.3
2,004,826 - -0.4
2,004,826 - -0.6
2,004,877 + +1.5
2,004,877 + -0.7
2,004,877 + -0.5
2,004,878 - -0.4
2,004,878 - +0.5
2,004,937 + -0.4
2,005,291 - +2.1
2,005,687 + AO356_08895 0.58 -1.1
2,006,101 + AO356_08895 0.87 -1.1
2,006,217 + -0.1
2,006,218 - +0.9
2,006,289 - +0.7
2,006,289 - +1.1
2,006,328 + -0.5
2,006,844 + AO356_08900 0.62 +1.5

Or see this region's nucleotide sequence