Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08870

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08865 and AO356_08870 are separated by 15 nucleotidesAO356_08870 and AO356_08875 are separated by 107 nucleotidesAO356_08875 and AO356_08880 overlap by 15 nucleotides AO356_08865: AO356_08865 - lipid transporter ATP-binding/permease, at 1,998,171 to 1,999,976 _08865 AO356_08870: AO356_08870 - polymerase, at 1,999,992 to 2,001,164 _08870 AO356_08875: AO356_08875 - toluene tolerance protein, at 2,001,272 to 2,001,877 _08875 AO356_08880: AO356_08880 - glycosyl transferase, at 2,001,863 to 2,002,966 _08880 Position (kb) 1999 2000 2001 2002Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2000.079 kb on - strandat 2000.509 kb on + strand, within AO356_08870at 2000.509 kb on + strand, within AO356_08870at 2000.677 kb on + strand, within AO356_08870at 2000.677 kb on + strand, within AO356_08870at 2000.677 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.744 kb on + strand, within AO356_08870at 2000.745 kb on - strand, within AO356_08870at 2000.753 kb on - strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.758 kb on + strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.759 kb on - strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.878 kb on + strand, within AO356_08870at 2000.879 kb on - strand, within AO356_08870at 2000.879 kb on - strand, within AO356_08870at 2000.879 kb on - strand, within AO356_08870at 2000.971 kb on + strand, within AO356_08870at 2000.971 kb on + strand, within AO356_08870at 2000.972 kb on - strand, within AO356_08870at 2000.972 kb on - strand, within AO356_08870at 2000.972 kb on - strand, within AO356_08870at 2000.995 kb on - strand, within AO356_08870at 2000.995 kb on - strand, within AO356_08870at 2001.118 kb on - strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.166 kb on + strandat 2001.167 kb on - strandat 2001.167 kb on - strandat 2001.175 kb on + strandat 2001.176 kb on - strandat 2001.185 kb on - strandat 2001.269 kb on - strandat 2001.549 kb on - strand, within AO356_08875at 2001.614 kb on - strand, within AO356_08875at 2001.807 kb on - strand, within AO356_08875at 2001.809 kb on - strand, within AO356_08875at 2001.809 kb on - strand, within AO356_08875at 2002.027 kb on - strand, within AO356_08880

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,000,079 - -2.1
2,000,509 + AO356_08870 0.44 -3.1
2,000,509 + AO356_08870 0.44 -1.3
2,000,677 + AO356_08870 0.58 -1.1
2,000,677 + AO356_08870 0.58 -0.5
2,000,677 + AO356_08870 0.58 -1.5
2,000,744 + AO356_08870 0.64 -2.3
2,000,744 + AO356_08870 0.64 +0.5
2,000,744 + AO356_08870 0.64 +0.5
2,000,744 + AO356_08870 0.64 -0.1
2,000,745 - AO356_08870 0.64 -2.6
2,000,753 - AO356_08870 0.65 -2.5
2,000,758 + AO356_08870 0.65 -1.5
2,000,758 + AO356_08870 0.65 -2.8
2,000,758 + AO356_08870 0.65 -2.4
2,000,758 + AO356_08870 0.65 +2.1
2,000,758 + AO356_08870 0.65 -0.3
2,000,758 + AO356_08870 0.65 -1.5
2,000,758 + AO356_08870 0.65 -3.3
2,000,759 - AO356_08870 0.65 -2.8
2,000,759 - AO356_08870 0.65 -2.8
2,000,759 - AO356_08870 0.65 -0.5
2,000,759 - AO356_08870 0.65 -1.1
2,000,878 + AO356_08870 0.76 -0.5
2,000,878 + AO356_08870 0.76 -1.5
2,000,878 + AO356_08870 0.76 -0.5
2,000,878 + AO356_08870 0.76 -1.9
2,000,878 + AO356_08870 0.76 -0.5
2,000,879 - AO356_08870 0.76 -3.0
2,000,879 - AO356_08870 0.76 -3.9
2,000,879 - AO356_08870 0.76 -1.9
2,000,971 + AO356_08870 0.83 -0.9
2,000,971 + AO356_08870 0.83 -1.3
2,000,972 - AO356_08870 0.84 -2.4
2,000,972 - AO356_08870 0.84 -2.8
2,000,972 - AO356_08870 0.84 -1.9
2,000,995 - AO356_08870 0.86 -1.5
2,000,995 - AO356_08870 0.86 -2.5
2,001,118 - -0.5
2,001,166 + -1.1
2,001,166 + -0.3
2,001,166 + +0.1
2,001,166 + -2.4
2,001,166 + -1.3
2,001,166 + -0.1
2,001,167 - -0.1
2,001,167 - +1.2
2,001,175 + +0.5
2,001,176 - -0.9
2,001,185 - +0.2
2,001,269 - -0.5
2,001,549 - AO356_08875 0.46 -0.9
2,001,614 - AO356_08875 0.56 -1.7
2,001,807 - AO356_08875 0.88 +1.5
2,001,809 - AO356_08875 0.89 -0.5
2,001,809 - AO356_08875 0.89 -0.1
2,002,027 - AO356_08880 0.15 -1.8

Or see this region's nucleotide sequence