Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08645

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08640 and AO356_08645 overlap by 1 nucleotidesAO356_08645 and AO356_08650 are separated by 85 nucleotides AO356_08640: AO356_08640 - membrane protease HflC, at 1,945,360 to 1,946,229 _08640 AO356_08645: AO356_08645 - hypothetical protein, at 1,946,229 to 1,947,401 _08645 AO356_08650: AO356_08650 - GTPase HflX, at 1,947,487 to 1,948,788 _08650 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -2 -1 0 1 2at 1945.286 kb on - strandat 1945.286 kb on - strandat 1945.286 kb on - strandat 1945.286 kb on - strandat 1945.358 kb on + strandat 1945.358 kb on + strandat 1945.449 kb on - strand, within AO356_08640at 1945.467 kb on - strand, within AO356_08640at 1945.475 kb on + strand, within AO356_08640at 1945.476 kb on - strand, within AO356_08640at 1945.496 kb on + strand, within AO356_08640at 1945.496 kb on + strand, within AO356_08640at 1945.509 kb on - strand, within AO356_08640at 1945.563 kb on - strand, within AO356_08640at 1945.563 kb on - strand, within AO356_08640at 1945.774 kb on - strand, within AO356_08640at 1945.774 kb on - strand, within AO356_08640at 1945.774 kb on - strand, within AO356_08640at 1945.774 kb on - strand, within AO356_08640at 1945.929 kb on - strand, within AO356_08640at 1945.929 kb on - strand, within AO356_08640at 1945.964 kb on + strand, within AO356_08640at 1945.965 kb on - strand, within AO356_08640at 1946.066 kb on + strand, within AO356_08640at 1946.067 kb on - strand, within AO356_08640at 1946.067 kb on - strand, within AO356_08640at 1946.160 kb on - strandat 1946.160 kb on - strandat 1946.202 kb on + strandat 1946.203 kb on - strandat 1946.220 kb on + strandat 1946.220 kb on + strandat 1946.220 kb on + strandat 1946.221 kb on - strandat 1946.246 kb on + strandat 1946.247 kb on - strandat 1946.247 kb on - strandat 1946.247 kb on - strandat 1946.247 kb on - strandat 1946.247 kb on - strandat 1946.371 kb on + strand, within AO356_08645at 1946.371 kb on + strand, within AO356_08645at 1946.371 kb on + strand, within AO356_08645at 1946.371 kb on + strand, within AO356_08645at 1946.372 kb on - strand, within AO356_08645at 1946.456 kb on - strand, within AO356_08645at 1946.623 kb on + strand, within AO356_08645at 1946.745 kb on - strand, within AO356_08645at 1946.755 kb on + strand, within AO356_08645at 1946.941 kb on + strand, within AO356_08645at 1946.941 kb on + strand, within AO356_08645at 1946.941 kb on + strand, within AO356_08645at 1946.942 kb on - strand, within AO356_08645at 1946.942 kb on - strand, within AO356_08645at 1947.008 kb on - strand, within AO356_08645at 1947.061 kb on + strand, within AO356_08645at 1947.061 kb on + strand, within AO356_08645at 1947.091 kb on + strand, within AO356_08645at 1947.092 kb on - strand, within AO356_08645at 1947.094 kb on + strand, within AO356_08645at 1947.094 kb on + strand, within AO356_08645at 1947.094 kb on + strand, within AO356_08645at 1947.095 kb on - strand, within AO356_08645at 1947.143 kb on - strand, within AO356_08645at 1947.154 kb on + strand, within AO356_08645at 1947.251 kb on + strand, within AO356_08645at 1947.251 kb on + strand, within AO356_08645at 1947.339 kb on - strandat 1947.369 kb on - strandat 1947.402 kb on - strandat 1947.419 kb on - strandat 1947.455 kb on + strandat 1947.456 kb on - strandat 1947.456 kb on - strandat 1947.456 kb on - strandat 1947.456 kb on - strandat 1947.456 kb on - strandat 1947.488 kb on + strandat 1947.488 kb on + strandat 1947.489 kb on - strandat 1947.489 kb on - strandat 1947.839 kb on + strand, within AO356_08650at 1947.839 kb on + strand, within AO356_08650at 1947.839 kb on + strand, within AO356_08650at 1947.839 kb on + strand, within AO356_08650at 1947.839 kb on + strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.840 kb on - strand, within AO356_08650at 1947.841 kb on + strand, within AO356_08650at 1947.841 kb on + strand, within AO356_08650at 1947.842 kb on - strand, within AO356_08650at 1947.842 kb on - strand, within AO356_08650at 1947.979 kb on - strand, within AO356_08650at 1947.979 kb on - strand, within AO356_08650at 1948.002 kb on + strand, within AO356_08650at 1948.003 kb on - strand, within AO356_08650at 1948.118 kb on + strand, within AO356_08650at 1948.119 kb on - strand, within AO356_08650at 1948.119 kb on - strand, within AO356_08650at 1948.119 kb on - strand, within AO356_08650at 1948.170 kb on + strand, within AO356_08650at 1948.170 kb on + strand, within AO356_08650at 1948.170 kb on + strand, within AO356_08650at 1948.170 kb on + strand, within AO356_08650at 1948.170 kb on + strand, within AO356_08650at 1948.170 kb on + strand, within AO356_08650at 1948.171 kb on - strand, within AO356_08650at 1948.171 kb on - strand, within AO356_08650at 1948.171 kb on - strand, within AO356_08650at 1948.172 kb on + strand, within AO356_08650at 1948.172 kb on + strand, within AO356_08650at 1948.173 kb on - strand, within AO356_08650at 1948.173 kb on - strand, within AO356_08650at 1948.387 kb on - strand, within AO356_08650at 1948.387 kb on - strand, within AO356_08650at 1948.387 kb on - strand, within AO356_08650

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,945,286 - +0.6
1,945,286 - +0.3
1,945,286 - -0.0
1,945,286 - -2.1
1,945,358 + -0.5
1,945,358 + +0.1
1,945,449 - AO356_08640 0.10 +0.1
1,945,467 - AO356_08640 0.12 +0.5
1,945,475 + AO356_08640 0.13 +0.1
1,945,476 - AO356_08640 0.13 -0.1
1,945,496 + AO356_08640 0.16 -0.5
1,945,496 + AO356_08640 0.16 -0.5
1,945,509 - AO356_08640 0.17 -0.3
1,945,563 - AO356_08640 0.23 +0.6
1,945,563 - AO356_08640 0.23 -1.5
1,945,774 - AO356_08640 0.48 -0.5
1,945,774 - AO356_08640 0.48 +0.5
1,945,774 - AO356_08640 0.48 +1.9
1,945,774 - AO356_08640 0.48 -0.9
1,945,929 - AO356_08640 0.65 -1.1
1,945,929 - AO356_08640 0.65 +1.5
1,945,964 + AO356_08640 0.69 -0.5
1,945,965 - AO356_08640 0.70 +0.9
1,946,066 + AO356_08640 0.81 -0.1
1,946,067 - AO356_08640 0.81 +0.5
1,946,067 - AO356_08640 0.81 -1.2
1,946,160 - -1.3
1,946,160 - +0.7
1,946,202 + -0.5
1,946,203 - +0.9
1,946,220 + +0.9
1,946,220 + +0.5
1,946,220 + +0.7
1,946,221 - -0.5
1,946,246 + -0.9
1,946,247 - -1.3
1,946,247 - +0.6
1,946,247 - -1.1
1,946,247 - -1.5
1,946,247 - +0.3
1,946,371 + AO356_08645 0.12 +0.5
1,946,371 + AO356_08645 0.12 -1.3
1,946,371 + AO356_08645 0.12 -1.9
1,946,371 + AO356_08645 0.12 -0.3
1,946,372 - AO356_08645 0.12 -1.3
1,946,456 - AO356_08645 0.19 -1.1
1,946,623 + AO356_08645 0.34 -0.5
1,946,745 - AO356_08645 0.44 -1.3
1,946,755 + AO356_08645 0.45 -0.9
1,946,941 + AO356_08645 0.61 +1.5
1,946,941 + AO356_08645 0.61 +1.5
1,946,941 + AO356_08645 0.61 -0.1
1,946,942 - AO356_08645 0.61 -0.1
1,946,942 - AO356_08645 0.61 +0.9
1,947,008 - AO356_08645 0.66 +1.5
1,947,061 + AO356_08645 0.71 +1.5
1,947,061 + AO356_08645 0.71 +2.1
1,947,091 + AO356_08645 0.73 -1.1
1,947,092 - AO356_08645 0.74 -1.3
1,947,094 + AO356_08645 0.74 +0.2
1,947,094 + AO356_08645 0.74 -0.1
1,947,094 + AO356_08645 0.74 +0.1
1,947,095 - AO356_08645 0.74 +1.5
1,947,143 - AO356_08645 0.78 -1.3
1,947,154 + AO356_08645 0.79 +1.5
1,947,251 + AO356_08645 0.87 +0.7
1,947,251 + AO356_08645 0.87 -0.9
1,947,339 - -1.2
1,947,369 - +1.5
1,947,402 - -1.5
1,947,419 - +0.3
1,947,455 + -0.5
1,947,456 - -0.3
1,947,456 - +0.1
1,947,456 - -0.3
1,947,456 - +0.5
1,947,456 - +0.9
1,947,488 + +0.1
1,947,488 + -1.1
1,947,489 - -0.3
1,947,489 - -1.1
1,947,839 + AO356_08650 0.27 -0.4
1,947,839 + AO356_08650 0.27 -1.5
1,947,839 + AO356_08650 0.27 +0.8
1,947,839 + AO356_08650 0.27 -0.9
1,947,839 + AO356_08650 0.27 -1.5
1,947,840 - AO356_08650 0.27 -0.3
1,947,840 - AO356_08650 0.27 +0.1
1,947,840 - AO356_08650 0.27 -0.5
1,947,840 - AO356_08650 0.27 -0.1
1,947,840 - AO356_08650 0.27 +0.3
1,947,840 - AO356_08650 0.27 +0.9
1,947,840 - AO356_08650 0.27 +1.0
1,947,840 - AO356_08650 0.27 +0.9
1,947,840 - AO356_08650 0.27 +0.7
1,947,840 - AO356_08650 0.27 +0.2
1,947,840 - AO356_08650 0.27 +0.3
1,947,840 - AO356_08650 0.27 -2.4
1,947,840 - AO356_08650 0.27 +0.9
1,947,841 + AO356_08650 0.27 +0.1
1,947,841 + AO356_08650 0.27 -1.3
1,947,842 - AO356_08650 0.27 +0.8
1,947,842 - AO356_08650 0.27 +0.0
1,947,979 - AO356_08650 0.38 -0.9
1,947,979 - AO356_08650 0.38 -1.0
1,948,002 + AO356_08650 0.40 +0.5
1,948,003 - AO356_08650 0.40 -1.8
1,948,118 + AO356_08650 0.48 -0.1
1,948,119 - AO356_08650 0.49 -0.2
1,948,119 - AO356_08650 0.49 -0.5
1,948,119 - AO356_08650 0.49 -0.0
1,948,170 + AO356_08650 0.52 +0.3
1,948,170 + AO356_08650 0.52 -0.6
1,948,170 + AO356_08650 0.52 -0.6
1,948,170 + AO356_08650 0.52 -1.3
1,948,170 + AO356_08650 0.52 +0.3
1,948,170 + AO356_08650 0.52 +0.5
1,948,171 - AO356_08650 0.53 +0.2
1,948,171 - AO356_08650 0.53 -0.4
1,948,171 - AO356_08650 0.53 +0.1
1,948,172 + AO356_08650 0.53 +0.4
1,948,172 + AO356_08650 0.53 -0.1
1,948,173 - AO356_08650 0.53 +1.5
1,948,173 - AO356_08650 0.53 +0.5
1,948,387 - AO356_08650 0.69 -0.1
1,948,387 - AO356_08650 0.69 -0.5
1,948,387 - AO356_08650 0.69 +0.2

Or see this region's nucleotide sequence