Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08610

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08605 and AO356_08610 overlap by 4 nucleotidesAO356_08610 and AO356_08615 are separated by 227 nucleotidesAO356_08615 and AO356_08620 are separated by 176 nucleotidesAO356_08620 and AO356_08625 are separated by 196 nucleotides AO356_08605: AO356_08605 - 23S rRNA methyltransferase, at 1,936,262 to 1,937,020 _08605 AO356_08610: AO356_08610 - exoribonuclease R, at 1,937,017 to 1,939,653 _08610 AO356_08615: AO356_08615 - tRNA-Leu, at 1,939,881 to 1,939,967 _08615 AO356_08620: AO356_08620 - tRNA-Leu, at 1,940,144 to 1,940,230 _08620 AO356_08625: AO356_08625 - chemotaxis protein, at 1,940,427 to 1,942,361 _08625 Position (kb) 1937 1938 1939 1940Strain fitness (log2 ratio) -2 -1 0 1 2at 1936.118 kb on - strandat 1936.118 kb on - strandat 1936.202 kb on - strandat 1936.202 kb on - strandat 1936.302 kb on - strandat 1936.383 kb on + strand, within AO356_08605at 1936.384 kb on - strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.470 kb on + strand, within AO356_08605at 1936.471 kb on - strand, within AO356_08605at 1936.471 kb on - strand, within AO356_08605at 1936.471 kb on - strand, within AO356_08605at 1936.471 kb on - strand, within AO356_08605at 1936.471 kb on - strand, within AO356_08605at 1936.471 kb on - strand, within AO356_08605at 1936.471 kb on - strand, within AO356_08605at 1936.474 kb on + strand, within AO356_08605at 1936.474 kb on + strand, within AO356_08605at 1936.474 kb on + strand, within AO356_08605at 1936.474 kb on + strand, within AO356_08605at 1936.474 kb on + strand, within AO356_08605at 1936.474 kb on + strand, within AO356_08605at 1936.475 kb on - strand, within AO356_08605at 1936.475 kb on - strand, within AO356_08605at 1936.475 kb on - strand, within AO356_08605at 1936.475 kb on - strand, within AO356_08605at 1936.475 kb on - strand, within AO356_08605at 1936.475 kb on - strand, within AO356_08605at 1936.475 kb on - strand, within AO356_08605at 1936.985 kb on + strandat 1936.985 kb on + strandat 1936.986 kb on - strandat 1937.032 kb on - strandat 1937.032 kb on - strandat 1937.032 kb on - strandat 1937.032 kb on - strandat 1937.088 kb on + strandat 1937.088 kb on + strandat 1937.089 kb on - strandat 1937.089 kb on - strandat 1937.097 kb on + strandat 1937.154 kb on + strandat 1937.154 kb on + strandat 1937.331 kb on + strand, within AO356_08610at 1937.331 kb on + strand, within AO356_08610at 1937.332 kb on - strand, within AO356_08610at 1937.332 kb on - strand, within AO356_08610at 1937.332 kb on - strand, within AO356_08610at 1937.338 kb on - strand, within AO356_08610at 1937.540 kb on + strand, within AO356_08610at 1937.540 kb on + strand, within AO356_08610at 1937.540 kb on + strand, within AO356_08610at 1937.541 kb on - strand, within AO356_08610at 1937.541 kb on - strand, within AO356_08610at 1937.544 kb on - strand, within AO356_08610at 1937.544 kb on - strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.585 kb on + strand, within AO356_08610at 1937.586 kb on - strand, within AO356_08610at 1937.586 kb on - strand, within AO356_08610at 1937.586 kb on - strand, within AO356_08610at 1937.586 kb on - strand, within AO356_08610at 1937.586 kb on - strand, within AO356_08610at 1937.775 kb on - strand, within AO356_08610at 1937.781 kb on - strand, within AO356_08610at 1937.919 kb on - strand, within AO356_08610at 1938.369 kb on - strand, within AO356_08610at 1938.654 kb on - strand, within AO356_08610at 1938.711 kb on - strand, within AO356_08610at 1938.993 kb on - strand, within AO356_08610at 1939.078 kb on + strand, within AO356_08610at 1939.415 kb on + strandat 1939.415 kb on + strandat 1939.416 kb on - strandat 1939.416 kb on - strandat 1939.416 kb on - strandat 1939.416 kb on - strandat 1939.434 kb on - strandat 1939.434 kb on - strandat 1939.674 kb on + strandat 1939.674 kb on + strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.675 kb on - strandat 1939.677 kb on - strandat 1939.677 kb on - strandat 1939.677 kb on - strandat 1939.695 kb on + strandat 1939.696 kb on - strandat 1939.696 kb on - strandat 1939.696 kb on - strandat 1939.702 kb on - strandat 1939.702 kb on - strandat 1939.818 kb on + strandat 1939.839 kb on + strandat 1939.841 kb on + strandat 1939.841 kb on + strandat 1939.862 kb on + strandat 1940.061 kb on + strandat 1940.061 kb on + strandat 1940.105 kb on - strandat 1940.105 kb on - strandat 1940.105 kb on - strandat 1940.106 kb on + strandat 1940.107 kb on - strandat 1940.107 kb on - strandat 1940.311 kb on + strandat 1940.311 kb on + strandat 1940.311 kb on + strandat 1940.311 kb on + strandat 1940.311 kb on + strandat 1940.312 kb on - strandat 1940.312 kb on - strandat 1940.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,936,118 - -0.2
1,936,118 - -0.0
1,936,202 - -1.1
1,936,202 - -0.5
1,936,302 - -0.5
1,936,383 + AO356_08605 0.16 -0.6
1,936,384 - AO356_08605 0.16 -0.9
1,936,470 + AO356_08605 0.27 +0.5
1,936,470 + AO356_08605 0.27 +0.0
1,936,470 + AO356_08605 0.27 +1.0
1,936,470 + AO356_08605 0.27 +1.1
1,936,470 + AO356_08605 0.27 -0.0
1,936,470 + AO356_08605 0.27 +1.1
1,936,470 + AO356_08605 0.27 +0.2
1,936,470 + AO356_08605 0.27 -0.5
1,936,471 - AO356_08605 0.28 -0.9
1,936,471 - AO356_08605 0.28 -0.5
1,936,471 - AO356_08605 0.28 +0.7
1,936,471 - AO356_08605 0.28 +0.5
1,936,471 - AO356_08605 0.28 -0.2
1,936,471 - AO356_08605 0.28 +0.7
1,936,471 - AO356_08605 0.28 -0.1
1,936,474 + AO356_08605 0.28 +0.1
1,936,474 + AO356_08605 0.28 +0.3
1,936,474 + AO356_08605 0.28 +0.3
1,936,474 + AO356_08605 0.28 -1.1
1,936,474 + AO356_08605 0.28 +0.5
1,936,474 + AO356_08605 0.28 +0.7
1,936,475 - AO356_08605 0.28 -1.5
1,936,475 - AO356_08605 0.28 +0.3
1,936,475 - AO356_08605 0.28 +0.8
1,936,475 - AO356_08605 0.28 +0.6
1,936,475 - AO356_08605 0.28 +1.5
1,936,475 - AO356_08605 0.28 -0.9
1,936,475 - AO356_08605 0.28 +1.6
1,936,985 + +0.4
1,936,985 + -0.6
1,936,986 - +2.3
1,937,032 - -0.4
1,937,032 - +0.5
1,937,032 - +0.2
1,937,032 - +0.2
1,937,088 + -1.6
1,937,088 + -0.9
1,937,089 - -0.2
1,937,089 - -0.3
1,937,097 + -0.3
1,937,154 + -0.5
1,937,154 + -0.1
1,937,331 + AO356_08610 0.12 -0.7
1,937,331 + AO356_08610 0.12 -0.1
1,937,332 - AO356_08610 0.12 +1.8
1,937,332 - AO356_08610 0.12 +0.4
1,937,332 - AO356_08610 0.12 +1.3
1,937,338 - AO356_08610 0.12 +0.7
1,937,540 + AO356_08610 0.20 -2.1
1,937,540 + AO356_08610 0.20 -0.5
1,937,540 + AO356_08610 0.20 -1.9
1,937,541 - AO356_08610 0.20 -1.9
1,937,541 - AO356_08610 0.20 -2.5
1,937,544 - AO356_08610 0.20 -1.1
1,937,544 - AO356_08610 0.20 -0.1
1,937,585 + AO356_08610 0.22 -1.7
1,937,585 + AO356_08610 0.22 -0.1
1,937,585 + AO356_08610 0.22 -1.7
1,937,585 + AO356_08610 0.22 -1.1
1,937,585 + AO356_08610 0.22 +0.5
1,937,585 + AO356_08610 0.22 -1.3
1,937,585 + AO356_08610 0.22 -1.7
1,937,585 + AO356_08610 0.22 -0.9
1,937,586 - AO356_08610 0.22 +0.5
1,937,586 - AO356_08610 0.22 -1.3
1,937,586 - AO356_08610 0.22 -0.1
1,937,586 - AO356_08610 0.22 -0.1
1,937,586 - AO356_08610 0.22 +0.5
1,937,775 - AO356_08610 0.29 -0.5
1,937,781 - AO356_08610 0.29 -1.3
1,937,919 - AO356_08610 0.34 +0.1
1,938,369 - AO356_08610 0.51 -1.3
1,938,654 - AO356_08610 0.62 -0.9
1,938,711 - AO356_08610 0.64 -0.9
1,938,993 - AO356_08610 0.75 -0.5
1,939,078 + AO356_08610 0.78 -1.1
1,939,415 + -0.1
1,939,415 + +0.5
1,939,416 - -0.5
1,939,416 - -2.1
1,939,416 - -1.7
1,939,416 - -1.7
1,939,434 - -2.0
1,939,434 - -1.0
1,939,674 + -0.1
1,939,674 + +1.0
1,939,675 - -0.1
1,939,675 - +1.1
1,939,675 - +0.8
1,939,675 - -0.5
1,939,675 - +1.5
1,939,675 - -1.1
1,939,675 - -0.9
1,939,675 - -1.9
1,939,675 - +1.5
1,939,675 - +1.7
1,939,675 - +0.7
1,939,675 - +0.5
1,939,675 - -0.1
1,939,675 - -0.4
1,939,675 - -0.5
1,939,677 - -0.6
1,939,677 - -0.9
1,939,677 - +0.0
1,939,695 + -0.4
1,939,696 - -0.9
1,939,696 - +1.1
1,939,696 - +2.3
1,939,702 - +0.5
1,939,702 - -1.9
1,939,818 + +1.5
1,939,839 + +1.5
1,939,841 + +1.7
1,939,841 + -1.3
1,939,862 + +2.0
1,940,061 + -0.1
1,940,061 + +0.8
1,940,105 - -1.1
1,940,105 - +0.2
1,940,105 - -0.6
1,940,106 + +0.5
1,940,107 - -0.5
1,940,107 - -0.3
1,940,311 + -0.5
1,940,311 + +0.5
1,940,311 + +0.4
1,940,311 + +1.2
1,940,311 + +0.3
1,940,312 - -0.2
1,940,312 - -0.9
1,940,312 - +0.8

Or see this region's nucleotide sequence