Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08475

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08470 and AO356_08475 are separated by 119 nucleotidesAO356_08475 and AO356_08480 are separated by 848 nucleotides AO356_08470: AO356_08470 - N-acylglucosamine 2-epimerase, at 1,904,082 to 1,905,215 _08470 AO356_08475: AO356_08475 - hypothetical protein, at 1,905,335 to 1,906,099 _08475 AO356_08480: AO356_08480 - ABC transporter ATP-binding protein, at 1,906,948 to 1,907,664 _08480 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -2 -1 0 1 2at 1904.401 kb on - strand, within AO356_08470at 1904.401 kb on - strand, within AO356_08470at 1904.401 kb on - strand, within AO356_08470at 1904.448 kb on + strand, within AO356_08470at 1904.448 kb on + strand, within AO356_08470at 1904.448 kb on + strand, within AO356_08470at 1904.448 kb on + strand, within AO356_08470at 1904.448 kb on + strand, within AO356_08470at 1904.449 kb on - strand, within AO356_08470at 1904.449 kb on - strand, within AO356_08470at 1904.484 kb on + strand, within AO356_08470at 1904.485 kb on - strand, within AO356_08470at 1904.577 kb on + strand, within AO356_08470at 1904.577 kb on + strand, within AO356_08470at 1904.578 kb on - strand, within AO356_08470at 1904.578 kb on - strand, within AO356_08470at 1904.578 kb on - strand, within AO356_08470at 1904.826 kb on + strand, within AO356_08470at 1904.826 kb on + strand, within AO356_08470at 1904.826 kb on + strand, within AO356_08470at 1904.827 kb on - strand, within AO356_08470at 1904.827 kb on - strand, within AO356_08470at 1904.827 kb on - strand, within AO356_08470at 1904.827 kb on - strand, within AO356_08470at 1904.827 kb on - strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.829 kb on + strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.830 kb on - strand, within AO356_08470at 1904.901 kb on - strand, within AO356_08470at 1905.012 kb on + strand, within AO356_08470at 1905.012 kb on + strand, within AO356_08470at 1905.012 kb on + strand, within AO356_08470at 1905.012 kb on + strand, within AO356_08470at 1905.013 kb on - strand, within AO356_08470at 1905.013 kb on - strand, within AO356_08470at 1905.055 kb on + strand, within AO356_08470at 1905.055 kb on + strand, within AO356_08470at 1905.055 kb on + strand, within AO356_08470at 1905.055 kb on + strand, within AO356_08470at 1905.056 kb on - strand, within AO356_08470at 1905.169 kb on - strandat 1905.205 kb on - strandat 1905.208 kb on + strandat 1905.208 kb on + strandat 1905.209 kb on - strandat 1905.209 kb on - strandat 1905.209 kb on - strandat 1905.209 kb on - strandat 1905.270 kb on + strandat 1905.270 kb on + strandat 1905.271 kb on - strandat 1905.271 kb on - strandat 1905.271 kb on - strandat 1905.336 kb on + strandat 1905.336 kb on + strandat 1905.336 kb on + strandat 1905.337 kb on - strandat 1905.337 kb on - strandat 1905.486 kb on + strand, within AO356_08475at 1905.486 kb on + strand, within AO356_08475at 1905.486 kb on + strand, within AO356_08475at 1905.487 kb on - strand, within AO356_08475at 1905.487 kb on - strand, within AO356_08475at 1905.487 kb on - strand, within AO356_08475at 1905.487 kb on - strand, within AO356_08475at 1905.498 kb on + strand, within AO356_08475at 1905.498 kb on + strand, within AO356_08475at 1905.498 kb on + strand, within AO356_08475at 1905.498 kb on + strand, within AO356_08475at 1905.499 kb on - strand, within AO356_08475at 1905.645 kb on + strand, within AO356_08475at 1905.645 kb on + strand, within AO356_08475at 1905.646 kb on - strand, within AO356_08475at 1905.669 kb on + strand, within AO356_08475at 1905.669 kb on + strand, within AO356_08475at 1905.670 kb on - strand, within AO356_08475at 1905.670 kb on - strand, within AO356_08475at 1905.670 kb on - strand, within AO356_08475at 1905.754 kb on - strand, within AO356_08475at 1905.754 kb on - strand, within AO356_08475at 1906.081 kb on + strandat 1906.081 kb on + strandat 1906.216 kb on - strandat 1906.276 kb on + strandat 1906.298 kb on - strandat 1906.415 kb on - strandat 1906.484 kb on + strandat 1906.542 kb on + strandat 1906.542 kb on + strandat 1906.543 kb on - strandat 1906.543 kb on - strandat 1906.543 kb on - strandat 1906.543 kb on - strandat 1906.622 kb on + strandat 1906.622 kb on + strandat 1906.623 kb on - strandat 1906.623 kb on - strandat 1906.624 kb on + strandat 1906.624 kb on + strandat 1906.642 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.899 kb on + strandat 1906.935 kb on + strandat 1906.935 kb on + strandat 1906.935 kb on + strandat 1906.935 kb on + strandat 1906.965 kb on - strandat 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,904,401 - AO356_08470 0.28 +0.6
1,904,401 - AO356_08470 0.28 +0.2
1,904,401 - AO356_08470 0.28 -0.6
1,904,448 + AO356_08470 0.32 +0.2
1,904,448 + AO356_08470 0.32 +2.0
1,904,448 + AO356_08470 0.32 -0.0
1,904,448 + AO356_08470 0.32 +0.6
1,904,448 + AO356_08470 0.32 +0.6
1,904,449 - AO356_08470 0.32 +0.3
1,904,449 - AO356_08470 0.32 +0.7
1,904,484 + AO356_08470 0.35 +1.5
1,904,485 - AO356_08470 0.36 +0.7
1,904,577 + AO356_08470 0.44 +1.2
1,904,577 + AO356_08470 0.44 +0.1
1,904,578 - AO356_08470 0.44 -1.1
1,904,578 - AO356_08470 0.44 +0.4
1,904,578 - AO356_08470 0.44 -1.0
1,904,826 + AO356_08470 0.66 -1.9
1,904,826 + AO356_08470 0.66 -0.6
1,904,826 + AO356_08470 0.66 -0.1
1,904,827 - AO356_08470 0.66 -0.0
1,904,827 - AO356_08470 0.66 -0.5
1,904,827 - AO356_08470 0.66 +1.1
1,904,827 - AO356_08470 0.66 +0.0
1,904,827 - AO356_08470 0.66 +1.3
1,904,829 + AO356_08470 0.66 -0.7
1,904,829 + AO356_08470 0.66 +0.1
1,904,829 + AO356_08470 0.66 -0.5
1,904,829 + AO356_08470 0.66 +0.5
1,904,829 + AO356_08470 0.66 +0.5
1,904,829 + AO356_08470 0.66 +0.5
1,904,829 + AO356_08470 0.66 -0.2
1,904,829 + AO356_08470 0.66 +0.8
1,904,829 + AO356_08470 0.66 +0.3
1,904,829 + AO356_08470 0.66 -0.0
1,904,830 - AO356_08470 0.66 +0.6
1,904,830 - AO356_08470 0.66 -0.0
1,904,830 - AO356_08470 0.66 -0.2
1,904,830 - AO356_08470 0.66 +0.3
1,904,830 - AO356_08470 0.66 -0.1
1,904,830 - AO356_08470 0.66 -0.4
1,904,830 - AO356_08470 0.66 +0.3
1,904,830 - AO356_08470 0.66 +0.4
1,904,830 - AO356_08470 0.66 -0.5
1,904,830 - AO356_08470 0.66 +0.9
1,904,830 - AO356_08470 0.66 +0.4
1,904,901 - AO356_08470 0.72 -0.2
1,905,012 + AO356_08470 0.82 +0.3
1,905,012 + AO356_08470 0.82 +0.4
1,905,012 + AO356_08470 0.82 +0.5
1,905,012 + AO356_08470 0.82 +1.0
1,905,013 - AO356_08470 0.82 +0.2
1,905,013 - AO356_08470 0.82 +0.0
1,905,055 + AO356_08470 0.86 +0.1
1,905,055 + AO356_08470 0.86 -0.1
1,905,055 + AO356_08470 0.86 +0.2
1,905,055 + AO356_08470 0.86 +0.0
1,905,056 - AO356_08470 0.86 -0.8
1,905,169 - +0.3
1,905,205 - +0.0
1,905,208 + -0.3
1,905,208 + -0.5
1,905,209 - -0.0
1,905,209 - +1.2
1,905,209 - +1.5
1,905,209 - +0.4
1,905,270 + +0.4
1,905,270 + -0.4
1,905,271 - -0.5
1,905,271 - -0.8
1,905,271 - -0.2
1,905,336 + +0.3
1,905,336 + -0.3
1,905,336 + +0.7
1,905,337 - -1.0
1,905,337 - -0.0
1,905,486 + AO356_08475 0.20 +0.3
1,905,486 + AO356_08475 0.20 +0.7
1,905,486 + AO356_08475 0.20 +0.2
1,905,487 - AO356_08475 0.20 +1.2
1,905,487 - AO356_08475 0.20 +0.5
1,905,487 - AO356_08475 0.20 +0.8
1,905,487 - AO356_08475 0.20 +0.2
1,905,498 + AO356_08475 0.21 -0.4
1,905,498 + AO356_08475 0.21 +1.0
1,905,498 + AO356_08475 0.21 +0.8
1,905,498 + AO356_08475 0.21 +0.6
1,905,499 - AO356_08475 0.21 +0.3
1,905,645 + AO356_08475 0.41 +0.3
1,905,645 + AO356_08475 0.41 -0.2
1,905,646 - AO356_08475 0.41 +0.8
1,905,669 + AO356_08475 0.44 +1.1
1,905,669 + AO356_08475 0.44 +0.3
1,905,670 - AO356_08475 0.44 +0.7
1,905,670 - AO356_08475 0.44 +1.0
1,905,670 - AO356_08475 0.44 -0.3
1,905,754 - AO356_08475 0.55 +0.3
1,905,754 - AO356_08475 0.55 +0.8
1,906,081 + -0.5
1,906,081 + +0.5
1,906,216 - -0.5
1,906,276 + +0.1
1,906,298 - +0.5
1,906,415 - +0.6
1,906,484 + -0.9
1,906,542 + +0.2
1,906,542 + +0.9
1,906,543 - +0.3
1,906,543 - +0.2
1,906,543 - -0.2
1,906,543 - +0.4
1,906,622 + +0.2
1,906,622 + -0.3
1,906,623 - +0.7
1,906,623 - -1.4
1,906,624 + +0.3
1,906,624 + +1.2
1,906,642 - -0.9
1,906,724 - -0.4
1,906,724 - +0.4
1,906,724 - -0.1
1,906,724 - +0.1
1,906,724 - +0.3
1,906,724 - +0.1
1,906,899 + +0.5
1,906,935 + -0.8
1,906,935 + +0.1
1,906,935 + -0.3
1,906,935 + -1.1
1,906,965 - -0.1
1,907,042 + AO356_08480 0.13 +0.5
1,907,042 + AO356_08480 0.13 +0.1
1,907,042 + AO356_08480 0.13 -0.4
1,907,042 + AO356_08480 0.13 +0.4
1,907,042 + AO356_08480 0.13 -0.0
1,907,043 - AO356_08480 0.13 +0.1
1,907,043 - AO356_08480 0.13 -1.3
1,907,043 - AO356_08480 0.13 -0.1
1,907,043 - AO356_08480 0.13 -0.4
1,907,043 - AO356_08480 0.13 +0.4
1,907,043 - AO356_08480 0.13 -0.6
1,907,043 - AO356_08480 0.13 -0.0
1,907,043 - AO356_08480 0.13 +0.6
1,907,043 - AO356_08480 0.13 +0.6
1,907,043 - AO356_08480 0.13 +0.5
1,907,043 - AO356_08480 0.13 -0.5
1,907,043 - AO356_08480 0.13 -0.5

Or see this region's nucleotide sequence