Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08325

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08315 and AO356_08320 are separated by 46 nucleotidesAO356_08320 and AO356_08325 are separated by 57 nucleotidesAO356_08325 and AO356_08330 are separated by 82 nucleotides AO356_08315: AO356_08315 - hypothetical protein, at 1,869,684 to 1,870,082 _08315 AO356_08320: AO356_08320 - copper resistance protein CopZ, at 1,870,129 to 1,870,608 _08320 AO356_08325: AO356_08325 - predicted copper homeostasis protein (from data), at 1,870,666 to 1,871,070 _08325 AO356_08330: AO356_08330 - TonB-dependent receptor, at 1,871,153 to 1,873,279 _08330 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -2 -1 0 1 2at 1869.972 kb on + strand, within AO356_08315at 1869.972 kb on + strand, within AO356_08315at 1870.094 kb on + strandat 1870.094 kb on + strandat 1870.095 kb on - strandat 1870.143 kb on + strandat 1870.143 kb on + strandat 1870.144 kb on - strandat 1870.144 kb on - strandat 1870.195 kb on + strand, within AO356_08320at 1870.195 kb on + strand, within AO356_08320at 1870.195 kb on + strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.196 kb on - strand, within AO356_08320at 1870.270 kb on + strand, within AO356_08320at 1870.271 kb on - strand, within AO356_08320at 1870.271 kb on - strand, within AO356_08320at 1870.447 kb on + strand, within AO356_08320at 1870.606 kb on + strandat 1870.612 kb on + strandat 1870.984 kb on + strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1870.985 kb on - strand, within AO356_08325at 1871.095 kb on + strandat 1871.095 kb on + strandat 1871.096 kb on - strandat 1871.096 kb on - strandat 1871.130 kb on + strandat 1871.130 kb on + strandat 1871.131 kb on - strandat 1871.427 kb on - strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.582 kb on + strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.583 kb on - strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.584 kb on + strand, within AO356_08330at 1871.585 kb on - strand, within AO356_08330at 1871.585 kb on - strand, within AO356_08330at 1871.600 kb on + strand, within AO356_08330at 1871.600 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.795 kb on + strand, within AO356_08330at 1871.796 kb on - strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.799 kb on + strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.800 kb on - strand, within AO356_08330at 1871.870 kb on + strand, within AO356_08330at 1871.967 kb on - strand, within AO356_08330

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,869,972 + AO356_08315 0.72 +0.2
1,869,972 + AO356_08315 0.72 -0.4
1,870,094 + -0.1
1,870,094 + +0.1
1,870,095 - -0.4
1,870,143 + -0.0
1,870,143 + -0.2
1,870,144 - -0.3
1,870,144 - -0.5
1,870,195 + AO356_08320 0.14 -0.8
1,870,195 + AO356_08320 0.14 +0.4
1,870,195 + AO356_08320 0.14 -0.3
1,870,196 - AO356_08320 0.14 +0.1
1,870,196 - AO356_08320 0.14 -2.0
1,870,196 - AO356_08320 0.14 +2.0
1,870,196 - AO356_08320 0.14 -0.5
1,870,196 - AO356_08320 0.14 +0.1
1,870,270 + AO356_08320 0.29 +0.8
1,870,271 - AO356_08320 0.30 -0.9
1,870,271 - AO356_08320 0.30 +1.0
1,870,447 + AO356_08320 0.66 -0.1
1,870,606 + -0.2
1,870,612 + -0.1
1,870,984 + AO356_08325 0.79 +0.7
1,870,985 - AO356_08325 0.79 +0.2
1,870,985 - AO356_08325 0.79 +1.3
1,870,985 - AO356_08325 0.79 +0.0
1,870,985 - AO356_08325 0.79 +0.7
1,871,095 + +1.1
1,871,095 + +0.5
1,871,096 - -1.9
1,871,096 - +0.5
1,871,130 + +1.0
1,871,130 + -0.4
1,871,131 - +0.7
1,871,427 - AO356_08330 0.13 +1.1
1,871,582 + AO356_08330 0.20 +0.8
1,871,582 + AO356_08330 0.20 +0.2
1,871,582 + AO356_08330 0.20 +0.8
1,871,582 + AO356_08330 0.20 +0.7
1,871,582 + AO356_08330 0.20 -0.0
1,871,582 + AO356_08330 0.20 +1.3
1,871,582 + AO356_08330 0.20 -0.0
1,871,583 - AO356_08330 0.20 -0.3
1,871,583 - AO356_08330 0.20 +0.6
1,871,583 - AO356_08330 0.20 +0.1
1,871,583 - AO356_08330 0.20 -0.9
1,871,583 - AO356_08330 0.20 -1.4
1,871,583 - AO356_08330 0.20 -1.1
1,871,583 - AO356_08330 0.20 -1.2
1,871,583 - AO356_08330 0.20 -0.2
1,871,584 + AO356_08330 0.20 +0.8
1,871,584 + AO356_08330 0.20 -1.5
1,871,584 + AO356_08330 0.20 -0.6
1,871,584 + AO356_08330 0.20 +0.3
1,871,584 + AO356_08330 0.20 +0.3
1,871,584 + AO356_08330 0.20 +0.2
1,871,584 + AO356_08330 0.20 +0.7
1,871,584 + AO356_08330 0.20 -0.9
1,871,585 - AO356_08330 0.20 -0.7
1,871,585 - AO356_08330 0.20 +1.0
1,871,600 + AO356_08330 0.21 +1.5
1,871,600 + AO356_08330 0.21 +0.8
1,871,795 + AO356_08330 0.30 +0.3
1,871,795 + AO356_08330 0.30 +1.2
1,871,795 + AO356_08330 0.30 +0.1
1,871,795 + AO356_08330 0.30 -1.2
1,871,795 + AO356_08330 0.30 -0.0
1,871,795 + AO356_08330 0.30 +0.4
1,871,796 - AO356_08330 0.30 -0.5
1,871,799 + AO356_08330 0.30 -0.8
1,871,799 + AO356_08330 0.30 +0.5
1,871,799 + AO356_08330 0.30 +0.6
1,871,799 + AO356_08330 0.30 -0.2
1,871,799 + AO356_08330 0.30 +0.1
1,871,799 + AO356_08330 0.30 -0.3
1,871,800 - AO356_08330 0.30 -0.4
1,871,800 - AO356_08330 0.30 +0.0
1,871,800 - AO356_08330 0.30 +0.1
1,871,800 - AO356_08330 0.30 -0.3
1,871,800 - AO356_08330 0.30 +0.5
1,871,870 + AO356_08330 0.34 -1.1
1,871,967 - AO356_08330 0.38 +0.5

Or see this region's nucleotide sequence