Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07390

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07380 and AO356_07385 are separated by 14 nucleotidesAO356_07385 and AO356_07390 are separated by 125 nucleotidesAO356_07390 and AO356_07395 are separated by 194 nucleotidesAO356_07395 and AO356_07400 are separated by 143 nucleotides AO356_07380: AO356_07380 - hypothetical protein, at 1,636,133 to 1,636,681 _07380 AO356_07385: AO356_07385 - tRNA-Thr, at 1,636,696 to 1,636,768 _07385 AO356_07390: AO356_07390 - polyribonucleotide nucleotidyltransferase, at 1,636,894 to 1,638,999 _07390 AO356_07395: AO356_07395 - 30S ribosomal protein S15, at 1,639,194 to 1,639,463 _07395 AO356_07400: AO356_07400 - pseudouridine synthase, at 1,639,607 to 1,640,524 _07400 Position (kb) 1636 1637 1638 1639Strain fitness (log2 ratio) -1 0 1 2at 1635.914 kb on - strandat 1635.981 kb on + strandat 1635.981 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.983 kb on + strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1635.984 kb on - strandat 1636.016 kb on + strandat 1636.016 kb on + strandat 1636.016 kb on + strandat 1636.016 kb on + strandat 1636.017 kb on - strandat 1636.017 kb on - strandat 1636.017 kb on - strandat 1636.017 kb on - strandat 1636.017 kb on - strandat 1636.017 kb on - strandat 1636.017 kb on - strandat 1636.017 kb on - strandat 1636.022 kb on + strandat 1636.022 kb on + strandat 1636.022 kb on + strandat 1636.023 kb on - strandat 1636.023 kb on - strandat 1636.023 kb on - strandat 1636.023 kb on - strandat 1636.023 kb on - strandat 1636.192 kb on + strand, within AO356_07380at 1636.280 kb on + strand, within AO356_07380at 1636.280 kb on + strand, within AO356_07380at 1636.281 kb on - strand, within AO356_07380at 1636.281 kb on - strand, within AO356_07380at 1636.294 kb on + strand, within AO356_07380at 1636.294 kb on + strand, within AO356_07380at 1636.294 kb on + strand, within AO356_07380at 1636.295 kb on - strand, within AO356_07380at 1636.298 kb on + strand, within AO356_07380at 1636.299 kb on - strand, within AO356_07380at 1636.299 kb on - strand, within AO356_07380at 1636.299 kb on - strand, within AO356_07380at 1636.299 kb on - strand, within AO356_07380at 1636.299 kb on - strand, within AO356_07380at 1636.299 kb on - strand, within AO356_07380at 1636.299 kb on - strand, within AO356_07380at 1636.363 kb on + strand, within AO356_07380at 1636.363 kb on + strand, within AO356_07380at 1636.364 kb on - strand, within AO356_07380at 1636.364 kb on - strand, within AO356_07380at 1636.679 kb on + strandat 1636.680 kb on - strandat 1636.680 kb on - strandat 1636.680 kb on - strandat 1636.733 kb on - strand, within AO356_07385at 1636.761 kb on - strandat 1636.761 kb on - strandat 1636.776 kb on - strandat 1636.781 kb on + strandat 1636.781 kb on + strandat 1636.781 kb on + strandat 1636.781 kb on + strandat 1636.782 kb on - strandat 1636.782 kb on - strandat 1637.123 kb on + strand, within AO356_07390at 1637.124 kb on - strand, within AO356_07390at 1639.756 kb on - strand, within AO356_07400at 1639.938 kb on + strand, within AO356_07400at 1639.939 kb on - strand, within AO356_07400at 1639.990 kb on - strand, within AO356_07400at 1639.990 kb on - strand, within AO356_07400at 1639.990 kb on - strand, within AO356_07400at 1639.990 kb on - strand, within AO356_07400at 1639.990 kb on - strand, within AO356_07400

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,635,914 - +0.4
1,635,981 + +0.1
1,635,981 + +0.4
1,635,983 + -0.6
1,635,983 + +0.7
1,635,983 + +1.0
1,635,983 + +0.1
1,635,983 + +0.2
1,635,983 + +0.2
1,635,983 + -0.8
1,635,983 + +0.2
1,635,983 + +2.0
1,635,983 + +0.7
1,635,983 + +0.4
1,635,983 + +0.5
1,635,984 - -0.3
1,635,984 - -0.0
1,635,984 - +0.9
1,635,984 - -0.3
1,635,984 - +0.2
1,635,984 - -0.5
1,635,984 - -0.3
1,635,984 - +0.8
1,635,984 - +0.4
1,636,016 + +1.3
1,636,016 + +0.6
1,636,016 + +0.9
1,636,016 + +0.6
1,636,017 - +0.1
1,636,017 - -0.9
1,636,017 - +0.4
1,636,017 - +0.5
1,636,017 - +0.6
1,636,017 - +0.1
1,636,017 - +0.8
1,636,017 - +0.7
1,636,022 + +0.6
1,636,022 + -0.3
1,636,022 + +0.3
1,636,023 - -0.8
1,636,023 - -0.8
1,636,023 - -0.6
1,636,023 - -0.2
1,636,023 - -0.2
1,636,192 + AO356_07380 0.11 +0.7
1,636,280 + AO356_07380 0.27 +0.6
1,636,280 + AO356_07380 0.27 +1.1
1,636,281 - AO356_07380 0.27 -0.1
1,636,281 - AO356_07380 0.27 -0.8
1,636,294 + AO356_07380 0.29 -1.6
1,636,294 + AO356_07380 0.29 -0.2
1,636,294 + AO356_07380 0.29 -0.3
1,636,295 - AO356_07380 0.30 +1.1
1,636,298 + AO356_07380 0.30 -0.3
1,636,299 - AO356_07380 0.30 +0.4
1,636,299 - AO356_07380 0.30 -1.1
1,636,299 - AO356_07380 0.30 +0.2
1,636,299 - AO356_07380 0.30 +0.4
1,636,299 - AO356_07380 0.30 +0.5
1,636,299 - AO356_07380 0.30 -0.1
1,636,299 - AO356_07380 0.30 +0.3
1,636,363 + AO356_07380 0.42 -0.1
1,636,363 + AO356_07380 0.42 -0.5
1,636,364 - AO356_07380 0.42 +0.2
1,636,364 - AO356_07380 0.42 +0.9
1,636,679 + +0.0
1,636,680 - +0.5
1,636,680 - -0.3
1,636,680 - +0.7
1,636,733 - AO356_07385 0.51 -0.6
1,636,761 - +0.1
1,636,761 - +2.0
1,636,776 - +0.5
1,636,781 + +0.7
1,636,781 + -0.6
1,636,781 + +0.5
1,636,781 + +0.5
1,636,782 - -0.3
1,636,782 - -0.7
1,637,123 + AO356_07390 0.11 -1.6
1,637,124 - AO356_07390 0.11 +0.7
1,639,756 - AO356_07400 0.16 +0.2
1,639,938 + AO356_07400 0.36 +0.5
1,639,939 - AO356_07400 0.36 +0.7
1,639,990 - AO356_07400 0.42 +0.7
1,639,990 - AO356_07400 0.42 +0.8
1,639,990 - AO356_07400 0.42 +0.7
1,639,990 - AO356_07400 0.42 -1.3
1,639,990 - AO356_07400 0.42 -0.0

Or see this region's nucleotide sequence