Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07055

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07045 and AO356_07050 are separated by 2 nucleotidesAO356_07050 and AO356_07055 are separated by 15 nucleotidesAO356_07055 and AO356_07060 are separated by 197 nucleotides AO356_07045: AO356_07045 - PTS fructose transporter subunit IIA, at 1,554,101 to 1,554,565 _07045 AO356_07050: AO356_07050 - glmZ(sRNA)-inactivating NTPase, at 1,554,568 to 1,555,425 _07050 AO356_07055: AO356_07055 - phosphocarrier protein HPr, at 1,555,441 to 1,555,716 _07055 AO356_07060: AO356_07060 - divalent cation transporter, at 1,555,914 to 1,556,804 _07060 Position (kb) 1555 1556Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1554.606 kb on + strandat 1554.607 kb on - strandat 1554.646 kb on + strandat 1554.646 kb on + strandat 1554.647 kb on - strandat 1554.647 kb on - strandat 1554.647 kb on - strandat 1554.813 kb on + strand, within AO356_07050at 1554.814 kb on - strand, within AO356_07050at 1554.833 kb on - strand, within AO356_07050at 1554.833 kb on - strand, within AO356_07050at 1555.006 kb on + strand, within AO356_07050at 1555.006 kb on + strand, within AO356_07050at 1555.007 kb on - strand, within AO356_07050at 1555.106 kb on + strand, within AO356_07050at 1555.204 kb on + strand, within AO356_07050at 1555.238 kb on - strand, within AO356_07050at 1555.255 kb on + strand, within AO356_07050at 1555.255 kb on + strand, within AO356_07050at 1555.256 kb on - strand, within AO356_07050at 1555.256 kb on - strand, within AO356_07050at 1555.300 kb on + strand, within AO356_07050at 1555.300 kb on + strand, within AO356_07050at 1555.301 kb on - strand, within AO356_07050at 1555.301 kb on - strand, within AO356_07050at 1555.301 kb on - strand, within AO356_07050at 1555.324 kb on - strand, within AO356_07050at 1555.348 kb on + strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.424 kb on - strandat 1555.424 kb on - strandat 1555.424 kb on - strandat 1555.679 kb on + strand, within AO356_07055at 1555.679 kb on + strand, within AO356_07055at 1555.680 kb on - strand, within AO356_07055at 1555.696 kb on + strandat 1555.866 kb on + strandat 1555.866 kb on + strandat 1555.866 kb on + strandat 1555.867 kb on - strandat 1555.869 kb on + strandat 1555.869 kb on + strandat 1555.869 kb on + strandat 1555.869 kb on + strandat 1555.870 kb on - strandat 1555.870 kb on - strandat 1556.419 kb on + strand, within AO356_07060at 1556.419 kb on + strand, within AO356_07060at 1556.420 kb on - strand, within AO356_07060at 1556.420 kb on - strand, within AO356_07060at 1556.420 kb on - strand, within AO356_07060at 1556.456 kb on + strand, within AO356_07060at 1556.456 kb on + strand, within AO356_07060at 1556.457 kb on - strand, within AO356_07060at 1556.457 kb on - strand, within AO356_07060at 1556.457 kb on - strand, within AO356_07060

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,554,606 + +1.8
1,554,607 - +0.1
1,554,646 + -0.3
1,554,646 + -0.2
1,554,647 - -2.1
1,554,647 - -1.2
1,554,647 - +0.4
1,554,813 + AO356_07050 0.29 +0.1
1,554,814 - AO356_07050 0.29 -0.3
1,554,833 - AO356_07050 0.31 -0.6
1,554,833 - AO356_07050 0.31 -0.7
1,555,006 + AO356_07050 0.51 -0.2
1,555,006 + AO356_07050 0.51 +0.4
1,555,007 - AO356_07050 0.51 -0.2
1,555,106 + AO356_07050 0.63 -0.6
1,555,204 + AO356_07050 0.74 -0.3
1,555,238 - AO356_07050 0.78 -0.5
1,555,255 + AO356_07050 0.80 +0.8
1,555,255 + AO356_07050 0.80 +1.0
1,555,256 - AO356_07050 0.80 +0.2
1,555,256 - AO356_07050 0.80 +0.0
1,555,300 + AO356_07050 0.85 +0.2
1,555,300 + AO356_07050 0.85 +0.9
1,555,301 - AO356_07050 0.85 -0.2
1,555,301 - AO356_07050 0.85 +1.2
1,555,301 - AO356_07050 0.85 -1.9
1,555,324 - AO356_07050 0.88 +0.4
1,555,348 + +0.4
1,555,349 - -0.2
1,555,349 - +0.4
1,555,349 - +0.1
1,555,349 - +0.4
1,555,349 - -2.2
1,555,424 - -0.6
1,555,424 - -0.3
1,555,424 - +0.1
1,555,679 + AO356_07055 0.86 -0.8
1,555,679 + AO356_07055 0.86 +0.2
1,555,680 - AO356_07055 0.87 -0.6
1,555,696 + -1.2
1,555,866 + +0.1
1,555,866 + -0.3
1,555,866 + +0.1
1,555,867 - -0.1
1,555,869 + -0.0
1,555,869 + +1.3
1,555,869 + +0.5
1,555,869 + -2.8
1,555,870 - -0.6
1,555,870 - -0.1
1,556,419 + AO356_07060 0.57 +0.5
1,556,419 + AO356_07060 0.57 +0.9
1,556,420 - AO356_07060 0.57 +0.4
1,556,420 - AO356_07060 0.57 +0.6
1,556,420 - AO356_07060 0.57 -0.7
1,556,456 + AO356_07060 0.61 -0.4
1,556,456 + AO356_07060 0.61 +0.6
1,556,457 - AO356_07060 0.61 +0.4
1,556,457 - AO356_07060 0.61 -0.4
1,556,457 - AO356_07060 0.61 +0.3

Or see this region's nucleotide sequence