Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06690

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06680 and AO356_06685 are separated by 63 nucleotidesAO356_06685 and AO356_06690 are separated by 43 nucleotidesAO356_06690 and AO356_06695 overlap by 4 nucleotides AO356_06680: AO356_06680 - preprotein translocase subunit SecD, at 1,474,897 to 1,476,765 _06680 AO356_06685: AO356_06685 - preprotein translocase subunit YajC, at 1,476,829 to 1,477,167 _06685 AO356_06690: AO356_06690 - queuine tRNA-ribosyltransferase, at 1,477,211 to 1,478,344 _06690 AO356_06695: AO356_06695 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,478,341 to 1,479,390 _06695 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1476.780 kb on - strandat 1476.817 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.917 kb on - strand, within AO356_06685at 1477.056 kb on - strand, within AO356_06685at 1477.150 kb on - strandat 1477.150 kb on - strandat 1477.156 kb on - strandat 1477.170 kb on - strandat 1477.188 kb on - strandat 1477.188 kb on - strandat 1477.188 kb on - strandat 1477.197 kb on - strandat 1477.197 kb on - strandat 1477.249 kb on - strandat 1477.249 kb on - strandat 1477.277 kb on - strandat 1477.310 kb on - strandat 1477.310 kb on - strandat 1477.393 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.604 kb on - strand, within AO356_06690at 1478.156 kb on - strand, within AO356_06690at 1478.223 kb on + strand, within AO356_06690at 1478.224 kb on - strand, within AO356_06690at 1478.344 kb on + strandat 1478.344 kb on + strandat 1478.344 kb on + strandat 1478.345 kb on - strandat 1478.345 kb on - strandat 1478.345 kb on - strandat 1478.345 kb on - strandat 1478.403 kb on - strandat 1478.403 kb on - strandat 1478.944 kb on + strand, within AO356_06695at 1478.944 kb on + strand, within AO356_06695at 1478.944 kb on + strand, within AO356_06695at 1478.945 kb on - strand, within AO356_06695at 1478.945 kb on - strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.946 kb on + strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.947 kb on - strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.948 kb on + strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1478.949 kb on - strand, within AO356_06695at 1479.211 kb on - strand, within AO356_06695

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,476,780 - +1.4
1,476,817 - +0.9
1,476,831 - +0.3
1,476,831 - -0.5
1,476,831 - -0.1
1,476,831 - +0.5
1,476,831 - +0.5
1,476,831 - -0.6
1,476,831 - -0.2
1,476,917 - AO356_06685 0.26 +0.6
1,477,056 - AO356_06685 0.67 -0.8
1,477,150 - -1.1
1,477,150 - -0.2
1,477,156 - -0.2
1,477,170 - -1.4
1,477,188 - -0.2
1,477,188 - -0.3
1,477,188 - +0.4
1,477,197 - +0.9
1,477,197 - -0.2
1,477,249 - -0.0
1,477,249 - -0.2
1,477,277 - +0.2
1,477,310 - +0.4
1,477,310 - +1.2
1,477,393 - AO356_06690 0.16 +1.2
1,477,420 - AO356_06690 0.18 +0.4
1,477,420 - AO356_06690 0.18 +0.8
1,477,420 - AO356_06690 0.18 +2.0
1,477,604 - AO356_06690 0.35 +3.2
1,478,156 - AO356_06690 0.83 +1.0
1,478,223 + AO356_06690 0.89 -0.9
1,478,224 - AO356_06690 0.89 +0.2
1,478,344 + +0.1
1,478,344 + +1.0
1,478,344 + -0.8
1,478,345 - +0.9
1,478,345 - -0.8
1,478,345 - +0.1
1,478,345 - +1.1
1,478,403 - -0.6
1,478,403 - +0.4
1,478,944 + AO356_06695 0.57 -0.6
1,478,944 + AO356_06695 0.57 +1.4
1,478,944 + AO356_06695 0.57 +1.3
1,478,945 - AO356_06695 0.58 +0.8
1,478,945 - AO356_06695 0.58 +0.8
1,478,946 + AO356_06695 0.58 +1.1
1,478,946 + AO356_06695 0.58 -0.2
1,478,946 + AO356_06695 0.58 +0.8
1,478,946 + AO356_06695 0.58 -0.3
1,478,946 + AO356_06695 0.58 +2.6
1,478,947 - AO356_06695 0.58 -1.2
1,478,947 - AO356_06695 0.58 -2.9
1,478,947 - AO356_06695 0.58 -0.8
1,478,947 - AO356_06695 0.58 +0.5
1,478,947 - AO356_06695 0.58 -0.1
1,478,947 - AO356_06695 0.58 +0.2
1,478,947 - AO356_06695 0.58 -0.6
1,478,948 + AO356_06695 0.58 -0.0
1,478,948 + AO356_06695 0.58 +0.1
1,478,948 + AO356_06695 0.58 -0.6
1,478,948 + AO356_06695 0.58 +0.7
1,478,949 - AO356_06695 0.58 -0.6
1,478,949 - AO356_06695 0.58 +1.0
1,478,949 - AO356_06695 0.58 +0.2
1,478,949 - AO356_06695 0.58 +1.7
1,478,949 - AO356_06695 0.58 -0.7
1,478,949 - AO356_06695 0.58 -2.0
1,478,949 - AO356_06695 0.58 -1.9
1,479,211 - AO356_06695 0.83 +0.9

Or see this region's nucleotide sequence