Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06065

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_06060 and AO356_06065 are separated by 275 nucleotidesAO356_06065 and AO356_06070 are separated by 32 nucleotides AO356_06060: AO356_06060 - sodium:proton antiporter, at 1,344,838 to 1,346,484 _06060 AO356_06065: AO356_06065 - ArsC family transcriptional regulator, at 1,346,760 to 1,347,122 _06065 AO356_06070: AO356_06070 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,347,155 to 1,348,189 _06070 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1 2at 1345.799 kb on + strand, within AO356_06060at 1345.799 kb on + strand, within AO356_06060at 1345.799 kb on + strand, within AO356_06060at 1345.799 kb on + strand, within AO356_06060at 1345.799 kb on + strand, within AO356_06060at 1345.800 kb on - strand, within AO356_06060at 1345.800 kb on - strand, within AO356_06060at 1345.800 kb on - strand, within AO356_06060at 1345.800 kb on - strand, within AO356_06060at 1345.800 kb on - strand, within AO356_06060at 1345.800 kb on - strand, within AO356_06060at 1346.160 kb on + strand, within AO356_06060at 1346.187 kb on - strand, within AO356_06060at 1346.392 kb on + strandat 1346.392 kb on + strandat 1346.469 kb on + strandat 1346.469 kb on + strandat 1346.470 kb on - strandat 1346.471 kb on + strandat 1346.471 kb on + strandat 1346.471 kb on + strandat 1346.471 kb on + strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.472 kb on - strandat 1346.543 kb on - strandat 1346.543 kb on - strandat 1346.543 kb on - strandat 1346.543 kb on - strandat 1346.545 kb on + strandat 1346.546 kb on - strandat 1346.559 kb on + strandat 1346.559 kb on + strandat 1346.560 kb on - strandat 1346.560 kb on - strandat 1346.571 kb on + strandat 1346.577 kb on + strandat 1346.577 kb on + strandat 1346.577 kb on + strandat 1346.577 kb on + strandat 1346.578 kb on - strandat 1346.578 kb on - strandat 1346.578 kb on - strandat 1346.578 kb on - strandat 1346.593 kb on + strandat 1346.593 kb on + strandat 1346.594 kb on - strandat 1346.597 kb on - strandat 1346.714 kb on + strandat 1346.714 kb on + strandat 1346.714 kb on + strandat 1346.715 kb on - strandat 1346.715 kb on - strandat 1346.715 kb on - strandat 1346.730 kb on - strandat 1346.730 kb on - strandat 1346.856 kb on + strand, within AO356_06065at 1346.871 kb on + strand, within AO356_06065at 1346.871 kb on + strand, within AO356_06065at 1347.102 kb on + strandat 1347.102 kb on + strandat 1347.102 kb on + strandat 1347.120 kb on + strandat 1347.120 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
1,345,799 + AO356_06060 0.58 +0.4
1,345,799 + AO356_06060 0.58 +0.2
1,345,799 + AO356_06060 0.58 -0.2
1,345,799 + AO356_06060 0.58 +0.7
1,345,799 + AO356_06060 0.58 -0.6
1,345,800 - AO356_06060 0.58 -1.2
1,345,800 - AO356_06060 0.58 +0.4
1,345,800 - AO356_06060 0.58 +0.2
1,345,800 - AO356_06060 0.58 +0.5
1,345,800 - AO356_06060 0.58 +0.4
1,345,800 - AO356_06060 0.58 -1.7
1,346,160 + AO356_06060 0.80 +0.5
1,346,187 - AO356_06060 0.82 +0.1
1,346,392 + +0.5
1,346,392 + -0.4
1,346,469 + +0.3
1,346,469 + +0.8
1,346,470 - -2.1
1,346,471 + +0.6
1,346,471 + +0.2
1,346,471 + -1.8
1,346,471 + +0.5
1,346,472 - -1.0
1,346,472 - +0.2
1,346,472 - +1.4
1,346,472 - +0.5
1,346,472 - +0.7
1,346,472 - +1.9
1,346,472 - -2.1
1,346,472 - -0.1
1,346,472 - -0.9
1,346,472 - -0.2
1,346,543 - -0.2
1,346,543 - -0.8
1,346,543 - +0.2
1,346,543 - -0.2
1,346,545 + +0.3
1,346,546 - -0.2
1,346,559 + +0.8
1,346,559 + +1.4
1,346,560 - +0.0
1,346,560 - -0.3
1,346,571 + -0.9
1,346,577 + -1.1
1,346,577 + +1.1
1,346,577 + +0.5
1,346,577 + +0.0
1,346,578 - +0.8
1,346,578 - -0.3
1,346,578 - -0.2
1,346,578 - +0.8
1,346,593 + +0.4
1,346,593 + +0.1
1,346,594 - +0.2
1,346,597 - +1.6
1,346,714 + -0.4
1,346,714 + +0.7
1,346,714 + +0.3
1,346,715 - -1.6
1,346,715 - -0.2
1,346,715 - -0.0
1,346,730 - -1.6
1,346,730 - +0.9
1,346,856 + AO356_06065 0.26 +0.5
1,346,871 + AO356_06065 0.31 +0.4
1,346,871 + AO356_06065 0.31 +0.7
1,347,102 + -0.2
1,347,102 + -0.1
1,347,102 + -0.4
1,347,120 + -0.8
1,347,120 + -0.2

Or see this region's nucleotide sequence