Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05100

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05090 and AO356_05095 are separated by 196 nucleotidesAO356_05095 and AO356_05100 are separated by 206 nucleotidesAO356_05100 and AO356_05105 are separated by 365 nucleotides AO356_05090: AO356_05090 - hypothetical protein, at 1,143,516 to 1,143,707 _05090 AO356_05095: AO356_05095 - hypothetical protein, at 1,143,904 to 1,144,281 _05095 AO356_05100: AO356_05100 - long-chain fatty acid--CoA ligase, at 1,144,488 to 1,146,179 _05100 AO356_05105: AO356_05105 - long-chain fatty acid--CoA ligase, at 1,146,545 to 1,148,233 _05105 Position (kb) 1144 1145 1146 1147Strain fitness (log2 ratio) -2 -1 0 1 2at 1143.504 kb on - strandat 1143.504 kb on - strandat 1143.504 kb on - strandat 1143.506 kb on + strandat 1143.506 kb on + strandat 1143.507 kb on - strandat 1143.507 kb on - strandat 1143.517 kb on + strandat 1143.517 kb on + strandat 1143.518 kb on - strandat 1143.614 kb on + strand, within AO356_05090at 1143.614 kb on + strand, within AO356_05090at 1143.614 kb on + strand, within AO356_05090at 1143.615 kb on - strand, within AO356_05090at 1143.615 kb on - strand, within AO356_05090at 1143.615 kb on - strand, within AO356_05090at 1143.690 kb on - strandat 1143.690 kb on - strandat 1143.690 kb on - strandat 1143.744 kb on + strandat 1143.744 kb on + strandat 1143.744 kb on + strandat 1143.744 kb on + strandat 1143.744 kb on + strandat 1143.744 kb on + strandat 1143.745 kb on - strandat 1143.745 kb on - strandat 1143.745 kb on - strandat 1143.748 kb on + strandat 1143.748 kb on + strandat 1143.748 kb on + strandat 1143.748 kb on + strandat 1143.748 kb on + strandat 1143.749 kb on - strandat 1143.749 kb on - strandat 1143.749 kb on - strandat 1143.749 kb on - strandat 1143.749 kb on - strandat 1143.749 kb on - strandat 1143.749 kb on - strandat 1143.827 kb on + strandat 1143.827 kb on + strandat 1143.827 kb on + strandat 1143.827 kb on + strandat 1143.828 kb on - strandat 1143.828 kb on - strandat 1143.862 kb on + strandat 1143.862 kb on + strandat 1143.862 kb on + strandat 1143.862 kb on + strandat 1143.863 kb on - strandat 1143.863 kb on - strandat 1143.903 kb on + strandat 1143.903 kb on + strandat 1143.903 kb on + strandat 1143.916 kb on - strandat 1143.916 kb on - strandat 1144.057 kb on + strand, within AO356_05095at 1144.057 kb on + strand, within AO356_05095at 1144.057 kb on + strand, within AO356_05095at 1144.058 kb on - strand, within AO356_05095at 1144.222 kb on + strand, within AO356_05095at 1144.223 kb on - strand, within AO356_05095at 1144.223 kb on - strand, within AO356_05095at 1144.280 kb on - strandat 1144.489 kb on + strandat 1144.490 kb on - strandat 1144.837 kb on + strand, within AO356_05100at 1144.837 kb on + strand, within AO356_05100at 1144.838 kb on - strand, within AO356_05100at 1144.838 kb on - strand, within AO356_05100at 1144.838 kb on - strand, within AO356_05100at 1145.042 kb on + strand, within AO356_05100at 1145.042 kb on + strand, within AO356_05100at 1145.107 kb on + strand, within AO356_05100at 1145.256 kb on - strand, within AO356_05100at 1145.256 kb on - strand, within AO356_05100at 1145.256 kb on - strand, within AO356_05100at 1145.339 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.389 kb on + strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.390 kb on - strand, within AO356_05100at 1145.398 kb on + strand, within AO356_05100at 1145.398 kb on + strand, within AO356_05100at 1145.398 kb on + strand, within AO356_05100at 1145.399 kb on - strand, within AO356_05100at 1145.539 kb on + strand, within AO356_05100at 1145.539 kb on + strand, within AO356_05100at 1145.539 kb on + strand, within AO356_05100at 1145.539 kb on + strand, within AO356_05100at 1145.540 kb on - strand, within AO356_05100at 1145.540 kb on - strand, within AO356_05100at 1145.540 kb on - strand, within AO356_05100at 1145.540 kb on - strand, within AO356_05100at 1145.540 kb on - strand, within AO356_05100at 1145.540 kb on - strand, within AO356_05100at 1145.540 kb on - strand, within AO356_05100at 1145.644 kb on + strand, within AO356_05100at 1145.644 kb on + strand, within AO356_05100at 1145.645 kb on - strand, within AO356_05100at 1145.645 kb on - strand, within AO356_05100at 1145.668 kb on + strand, within AO356_05100at 1145.668 kb on + strand, within AO356_05100at 1145.668 kb on + strand, within AO356_05100at 1145.668 kb on + strand, within AO356_05100at 1145.668 kb on + strand, within AO356_05100at 1145.668 kb on + strand, within AO356_05100at 1145.669 kb on - strand, within AO356_05100at 1145.669 kb on - strand, within AO356_05100at 1145.669 kb on - strand, within AO356_05100at 1145.854 kb on + strand, within AO356_05100at 1145.854 kb on + strand, within AO356_05100at 1145.964 kb on + strand, within AO356_05100at 1145.972 kb on + strand, within AO356_05100at 1145.972 kb on + strand, within AO356_05100at 1145.986 kb on + strand, within AO356_05100at 1146.013 kb on + strandat 1146.014 kb on - strandat 1146.014 kb on - strandat 1146.025 kb on + strandat 1146.025 kb on + strandat 1146.025 kb on + strandat 1146.026 kb on - strandat 1146.026 kb on - strandat 1146.026 kb on - strandat 1146.104 kb on + strandat 1146.151 kb on + strandat 1146.151 kb on + strandat 1146.151 kb on + strandat 1146.152 kb on - strandat 1146.152 kb on - strandat 1146.155 kb on + strandat 1146.155 kb on + strandat 1146.155 kb on + strandat 1146.155 kb on + strandat 1146.155 kb on + strandat 1146.155 kb on + strandat 1146.155 kb on + strandat 1146.156 kb on - strandat 1146.156 kb on - strandat 1146.231 kb on + strandat 1146.232 kb on - strandat 1146.232 kb on - strandat 1146.232 kb on - strandat 1146.323 kb on + strandat 1146.351 kb on - strandat 1146.398 kb on + strandat 1146.422 kb on + strandat 1146.423 kb on - strandat 1146.423 kb on - strandat 1146.426 kb on + strandat 1146.426 kb on + strandat 1146.427 kb on - strandat 1146.427 kb on - strandat 1146.465 kb on + strandat 1146.466 kb on - strandat 1146.466 kb on - strandat 1146.466 kb on - strandat 1146.492 kb on + strandat 1146.492 kb on + strandat 1146.493 kb on - strandat 1146.637 kb on - strandat 1146.637 kb on - strandat 1146.661 kb on - strandat 1146.810 kb on + strand, within AO356_05105at 1146.810 kb on + strand, within AO356_05105at 1146.811 kb on - strand, within AO356_05105at 1146.957 kb on + strand, within AO356_05105at 1147.051 kb on + strand, within AO356_05105at 1147.051 kb on + strand, within AO356_05105at 1147.052 kb on - strand, within AO356_05105at 1147.140 kb on + strand, within AO356_05105

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,143,504 - +0.4
1,143,504 - -1.0
1,143,504 - -1.5
1,143,506 + -0.4
1,143,506 + +0.3
1,143,507 - +0.7
1,143,507 - -0.1
1,143,517 + +0.2
1,143,517 + +1.0
1,143,518 - +0.8
1,143,614 + AO356_05090 0.51 -1.0
1,143,614 + AO356_05090 0.51 +1.6
1,143,614 + AO356_05090 0.51 +0.0
1,143,615 - AO356_05090 0.52 -0.0
1,143,615 - AO356_05090 0.52 -1.0
1,143,615 - AO356_05090 0.52 -0.4
1,143,690 - +0.9
1,143,690 - -2.2
1,143,690 - +1.2
1,143,744 + +1.3
1,143,744 + -0.4
1,143,744 + -0.6
1,143,744 + +0.4
1,143,744 + -0.5
1,143,744 + +0.6
1,143,745 - +0.5
1,143,745 - -1.0
1,143,745 - -0.2
1,143,748 + +0.4
1,143,748 + +0.2
1,143,748 + +0.3
1,143,748 + -0.3
1,143,748 + +0.4
1,143,749 - +0.2
1,143,749 - -1.8
1,143,749 - +0.5
1,143,749 - -0.3
1,143,749 - -0.4
1,143,749 - +0.1
1,143,749 - +0.4
1,143,827 + -0.2
1,143,827 + +1.3
1,143,827 + -1.1
1,143,827 + +1.0
1,143,828 - +0.4
1,143,828 - +0.6
1,143,862 + +0.1
1,143,862 + +0.3
1,143,862 + +0.2
1,143,862 + +0.6
1,143,863 - +0.3
1,143,863 - +0.7
1,143,903 + +0.6
1,143,903 + -1.3
1,143,903 + -0.2
1,143,916 - +0.6
1,143,916 - -0.1
1,144,057 + AO356_05095 0.40 +0.5
1,144,057 + AO356_05095 0.40 -0.7
1,144,057 + AO356_05095 0.40 +0.5
1,144,058 - AO356_05095 0.41 +0.5
1,144,222 + AO356_05095 0.84 +0.1
1,144,223 - AO356_05095 0.84 +0.8
1,144,223 - AO356_05095 0.84 -0.3
1,144,280 - -1.2
1,144,489 + +0.6
1,144,490 - -0.2
1,144,837 + AO356_05100 0.21 +1.3
1,144,837 + AO356_05100 0.21 +1.3
1,144,838 - AO356_05100 0.21 +1.7
1,144,838 - AO356_05100 0.21 +1.0
1,144,838 - AO356_05100 0.21 +1.1
1,145,042 + AO356_05100 0.33 +0.6
1,145,042 + AO356_05100 0.33 +0.0
1,145,107 + AO356_05100 0.37 +1.0
1,145,256 - AO356_05100 0.45 +0.8
1,145,256 - AO356_05100 0.45 +1.5
1,145,256 - AO356_05100 0.45 -0.7
1,145,339 + AO356_05100 0.50 +1.9
1,145,389 + AO356_05100 0.53 +0.6
1,145,389 + AO356_05100 0.53 +1.1
1,145,389 + AO356_05100 0.53 -0.3
1,145,389 + AO356_05100 0.53 +2.1
1,145,389 + AO356_05100 0.53 +1.2
1,145,389 + AO356_05100 0.53 +0.2
1,145,389 + AO356_05100 0.53 +1.4
1,145,389 + AO356_05100 0.53 +0.9
1,145,389 + AO356_05100 0.53 +1.2
1,145,389 + AO356_05100 0.53 +2.3
1,145,390 - AO356_05100 0.53 +2.1
1,145,390 - AO356_05100 0.53 +1.3
1,145,390 - AO356_05100 0.53 +0.8
1,145,390 - AO356_05100 0.53 +2.0
1,145,390 - AO356_05100 0.53 +1.3
1,145,390 - AO356_05100 0.53 +1.8
1,145,390 - AO356_05100 0.53 +1.3
1,145,390 - AO356_05100 0.53 +1.2
1,145,398 + AO356_05100 0.54 +0.9
1,145,398 + AO356_05100 0.54 +1.7
1,145,398 + AO356_05100 0.54 +1.4
1,145,399 - AO356_05100 0.54 +0.7
1,145,539 + AO356_05100 0.62 +0.4
1,145,539 + AO356_05100 0.62 +0.8
1,145,539 + AO356_05100 0.62 +1.4
1,145,539 + AO356_05100 0.62 +1.5
1,145,540 - AO356_05100 0.62 -0.2
1,145,540 - AO356_05100 0.62 -0.1
1,145,540 - AO356_05100 0.62 +1.3
1,145,540 - AO356_05100 0.62 +1.1
1,145,540 - AO356_05100 0.62 +1.8
1,145,540 - AO356_05100 0.62 +1.0
1,145,540 - AO356_05100 0.62 +1.2
1,145,644 + AO356_05100 0.68 +1.1
1,145,644 + AO356_05100 0.68 +1.9
1,145,645 - AO356_05100 0.68 +1.7
1,145,645 - AO356_05100 0.68 -0.1
1,145,668 + AO356_05100 0.70 +1.2
1,145,668 + AO356_05100 0.70 +0.5
1,145,668 + AO356_05100 0.70 +1.8
1,145,668 + AO356_05100 0.70 +0.9
1,145,668 + AO356_05100 0.70 +0.8
1,145,668 + AO356_05100 0.70 +0.8
1,145,669 - AO356_05100 0.70 +0.5
1,145,669 - AO356_05100 0.70 +1.4
1,145,669 - AO356_05100 0.70 +1.1
1,145,854 + AO356_05100 0.81 +1.2
1,145,854 + AO356_05100 0.81 +2.0
1,145,964 + AO356_05100 0.87 +1.1
1,145,972 + AO356_05100 0.88 +0.9
1,145,972 + AO356_05100 0.88 +2.3
1,145,986 + AO356_05100 0.89 +1.3
1,146,013 + +0.9
1,146,014 - +0.9
1,146,014 - +0.6
1,146,025 + +1.3
1,146,025 + +1.9
1,146,025 + +1.2
1,146,026 - -0.2
1,146,026 - -0.6
1,146,026 - +1.1
1,146,104 + +0.6
1,146,151 + +1.9
1,146,151 + +1.4
1,146,151 + +1.0
1,146,152 - -0.2
1,146,152 - +0.7
1,146,155 + +0.1
1,146,155 + +1.2
1,146,155 + +1.0
1,146,155 + +1.6
1,146,155 + +0.9
1,146,155 + +1.8
1,146,155 + +1.5
1,146,156 - +1.4
1,146,156 - +0.9
1,146,231 + +1.6
1,146,232 - -0.7
1,146,232 - -0.2
1,146,232 - -0.5
1,146,323 + +0.8
1,146,351 - +0.3
1,146,398 + +0.2
1,146,422 + +0.0
1,146,423 - +0.5
1,146,423 - -0.2
1,146,426 + +0.2
1,146,426 + -0.2
1,146,427 - -0.1
1,146,427 - +0.2
1,146,465 + +1.1
1,146,466 - +0.1
1,146,466 - -0.1
1,146,466 - -0.8
1,146,492 + +0.2
1,146,492 + +0.8
1,146,493 - -0.2
1,146,637 - -1.0
1,146,637 - -1.3
1,146,661 - +1.2
1,146,810 + AO356_05105 0.16 -0.0
1,146,810 + AO356_05105 0.16 -0.7
1,146,811 - AO356_05105 0.16 +0.4
1,146,957 + AO356_05105 0.24 -0.1
1,147,051 + AO356_05105 0.30 +0.7
1,147,051 + AO356_05105 0.30 +0.5
1,147,052 - AO356_05105 0.30 +0.4
1,147,140 + AO356_05105 0.35 +0.3

Or see this region's nucleotide sequence