Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05080

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05070 and AO356_05075 are separated by 290 nucleotidesAO356_05075 and AO356_05080 are separated by 121 nucleotidesAO356_05080 and AO356_05085 overlap by 4 nucleotides AO356_05070: AO356_05070 - hypothetical protein, at 1,140,470 to 1,141,024 _05070 AO356_05075: AO356_05075 - GCN5 family acetyltransferase, at 1,141,315 to 1,141,734 _05075 AO356_05080: AO356_05080 - peptide deformylase, at 1,141,856 to 1,142,395 _05080 AO356_05085: AO356_05085 - ribonuclease BN, at 1,142,392 to 1,143,342 _05085 Position (kb) 1141 1142 1143Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.215 kb on + strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.216 kb on - strandat 1141.219 kb on + strandat 1141.219 kb on + strandat 1141.219 kb on + strandat 1141.219 kb on + strandat 1141.219 kb on + strandat 1141.219 kb on + strandat 1141.220 kb on - strandat 1141.220 kb on - strandat 1141.220 kb on - strandat 1141.220 kb on - strandat 1141.220 kb on - strandat 1141.220 kb on - strandat 1141.220 kb on - strandat 1141.220 kb on - strandat 1141.249 kb on + strandat 1141.249 kb on + strandat 1141.249 kb on + strandat 1141.250 kb on - strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.251 kb on + strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.252 kb on - strandat 1141.257 kb on + strandat 1141.257 kb on + strandat 1141.257 kb on + strandat 1141.258 kb on - strandat 1141.258 kb on - strandat 1141.258 kb on - strandat 1141.258 kb on - strandat 1141.266 kb on - strandat 1141.280 kb on - strandat 1141.280 kb on - strandat 1141.280 kb on - strandat 1141.280 kb on - strandat 1141.282 kb on - strandat 1141.325 kb on + strandat 1141.375 kb on + strand, within AO356_05075at 1141.615 kb on + strand, within AO356_05075at 1141.655 kb on - strand, within AO356_05075at 1141.682 kb on - strand, within AO356_05075at 1141.854 kb on + strandat 1141.938 kb on + strand, within AO356_05080at 1142.549 kb on - strand, within AO356_05085at 1142.570 kb on + strand, within AO356_05085at 1142.570 kb on + strand, within AO356_05085at 1142.571 kb on - strand, within AO356_05085at 1142.571 kb on - strand, within AO356_05085at 1142.571 kb on - strand, within AO356_05085at 1142.576 kb on + strand, within AO356_05085at 1142.576 kb on + strand, within AO356_05085at 1142.576 kb on + strand, within AO356_05085at 1142.576 kb on + strand, within AO356_05085at 1142.577 kb on - strand, within AO356_05085at 1142.577 kb on - strand, within AO356_05085at 1142.612 kb on + strand, within AO356_05085at 1142.612 kb on + strand, within AO356_05085at 1142.612 kb on + strand, within AO356_05085at 1142.612 kb on + strand, within AO356_05085at 1142.613 kb on - strand, within AO356_05085at 1142.613 kb on - strand, within AO356_05085at 1142.613 kb on - strand, within AO356_05085at 1142.613 kb on - strand, within AO356_05085at 1142.613 kb on - strand, within AO356_05085at 1142.624 kb on + strand, within AO356_05085at 1142.624 kb on + strand, within AO356_05085at 1142.624 kb on + strand, within AO356_05085at 1142.624 kb on + strand, within AO356_05085at 1142.624 kb on + strand, within AO356_05085at 1142.625 kb on - strand, within AO356_05085at 1142.625 kb on - strand, within AO356_05085at 1142.645 kb on + strand, within AO356_05085at 1142.645 kb on + strand, within AO356_05085at 1142.646 kb on - strand, within AO356_05085at 1142.646 kb on - strand, within AO356_05085at 1142.646 kb on - strand, within AO356_05085at 1142.744 kb on + strand, within AO356_05085at 1142.744 kb on + strand, within AO356_05085at 1142.745 kb on - strand, within AO356_05085at 1142.745 kb on - strand, within AO356_05085at 1142.747 kb on + strand, within AO356_05085at 1142.747 kb on + strand, within AO356_05085at 1142.747 kb on + strand, within AO356_05085at 1142.748 kb on - strand, within AO356_05085at 1142.748 kb on - strand, within AO356_05085at 1142.748 kb on - strand, within AO356_05085at 1142.748 kb on - strand, within AO356_05085at 1142.748 kb on - strand, within AO356_05085at 1142.924 kb on + strand, within AO356_05085at 1142.925 kb on - strand, within AO356_05085at 1142.979 kb on - strand, within AO356_05085at 1143.254 kb on + strandat 1143.254 kb on + strandat 1143.255 kb on - strandat 1143.255 kb on - strandat 1143.292 kb on - strandat 1143.316 kb on + strandat 1143.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,141,215 + +1.2
1,141,215 + -0.1
1,141,215 + -0.8
1,141,215 + +0.1
1,141,215 + -0.7
1,141,215 + -0.8
1,141,215 + -0.4
1,141,215 + +0.2
1,141,215 + +0.6
1,141,215 + +0.4
1,141,215 + -0.2
1,141,215 + +0.3
1,141,216 - +0.8
1,141,216 - +1.4
1,141,216 - +0.2
1,141,216 - -1.0
1,141,216 - -2.0
1,141,216 - -0.5
1,141,216 - -1.3
1,141,216 - -0.2
1,141,216 - -0.7
1,141,216 - -0.9
1,141,216 - -0.2
1,141,219 + +0.8
1,141,219 + -0.3
1,141,219 + -0.6
1,141,219 + +0.6
1,141,219 + -0.3
1,141,219 + -0.2
1,141,220 - +0.7
1,141,220 - +0.1
1,141,220 - +0.0
1,141,220 - -0.1
1,141,220 - -0.0
1,141,220 - -0.4
1,141,220 - +0.9
1,141,220 - +0.2
1,141,249 + -0.6
1,141,249 + +1.3
1,141,249 + +0.2
1,141,250 - -0.7
1,141,251 + -1.0
1,141,251 + +0.6
1,141,251 + -1.7
1,141,251 + -0.0
1,141,251 + +0.3
1,141,251 + +2.3
1,141,251 + +0.8
1,141,251 + -0.9
1,141,251 + -0.6
1,141,251 + +0.6
1,141,251 + -0.6
1,141,251 + -1.1
1,141,251 + +0.5
1,141,251 + +1.6
1,141,251 + +0.2
1,141,252 - +0.0
1,141,252 - -0.6
1,141,252 - +0.7
1,141,252 - -0.7
1,141,252 - +0.8
1,141,252 - +0.2
1,141,252 - +0.8
1,141,252 - +1.0
1,141,252 - +0.3
1,141,252 - -0.1
1,141,252 - -0.2
1,141,252 - -0.3
1,141,252 - -0.3
1,141,252 - -0.3
1,141,252 - +0.3
1,141,252 - -0.4
1,141,257 + -0.5
1,141,257 + +0.8
1,141,257 + -0.1
1,141,258 - -0.1
1,141,258 - -1.0
1,141,258 - +0.2
1,141,258 - +0.5
1,141,266 - -1.9
1,141,280 - +0.4
1,141,280 - -0.1
1,141,280 - -0.3
1,141,280 - -0.9
1,141,282 - +0.0
1,141,325 + +0.8
1,141,375 + AO356_05075 0.14 -1.0
1,141,615 + AO356_05075 0.71 +1.6
1,141,655 - AO356_05075 0.81 +0.4
1,141,682 - AO356_05075 0.87 +0.3
1,141,854 + -0.1
1,141,938 + AO356_05080 0.15 +0.7
1,142,549 - AO356_05085 0.17 -0.4
1,142,570 + AO356_05085 0.19 +0.1
1,142,570 + AO356_05085 0.19 +1.4
1,142,571 - AO356_05085 0.19 -0.0
1,142,571 - AO356_05085 0.19 +0.3
1,142,571 - AO356_05085 0.19 +1.0
1,142,576 + AO356_05085 0.19 -1.3
1,142,576 + AO356_05085 0.19 +0.9
1,142,576 + AO356_05085 0.19 +0.0
1,142,576 + AO356_05085 0.19 -0.3
1,142,577 - AO356_05085 0.19 -0.4
1,142,577 - AO356_05085 0.19 -1.9
1,142,612 + AO356_05085 0.23 +0.8
1,142,612 + AO356_05085 0.23 +0.0
1,142,612 + AO356_05085 0.23 +0.4
1,142,612 + AO356_05085 0.23 +0.2
1,142,613 - AO356_05085 0.23 +1.9
1,142,613 - AO356_05085 0.23 +0.2
1,142,613 - AO356_05085 0.23 +0.8
1,142,613 - AO356_05085 0.23 -0.8
1,142,613 - AO356_05085 0.23 +0.3
1,142,624 + AO356_05085 0.24 +0.2
1,142,624 + AO356_05085 0.24 +0.3
1,142,624 + AO356_05085 0.24 -1.3
1,142,624 + AO356_05085 0.24 +0.0
1,142,624 + AO356_05085 0.24 +1.3
1,142,625 - AO356_05085 0.25 -0.3
1,142,625 - AO356_05085 0.25 -0.9
1,142,645 + AO356_05085 0.27 -0.1
1,142,645 + AO356_05085 0.27 +0.2
1,142,646 - AO356_05085 0.27 -0.4
1,142,646 - AO356_05085 0.27 +1.0
1,142,646 - AO356_05085 0.27 +2.9
1,142,744 + AO356_05085 0.37 -0.4
1,142,744 + AO356_05085 0.37 +1.1
1,142,745 - AO356_05085 0.37 -0.4
1,142,745 - AO356_05085 0.37 +0.7
1,142,747 + AO356_05085 0.37 +1.5
1,142,747 + AO356_05085 0.37 -0.3
1,142,747 + AO356_05085 0.37 -0.4
1,142,748 - AO356_05085 0.37 -0.2
1,142,748 - AO356_05085 0.37 +0.3
1,142,748 - AO356_05085 0.37 +0.4
1,142,748 - AO356_05085 0.37 +0.7
1,142,748 - AO356_05085 0.37 +0.4
1,142,924 + AO356_05085 0.56 -0.3
1,142,925 - AO356_05085 0.56 -0.6
1,142,979 - AO356_05085 0.62 +0.4
1,143,254 + -0.6
1,143,254 + +0.1
1,143,255 - +0.6
1,143,255 - +0.0
1,143,292 - +0.3
1,143,316 + -0.6
1,143,316 + +0.4

Or see this region's nucleotide sequence