Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04870

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04865 and AO356_04870 are separated by 213 nucleotidesAO356_04870 and AO356_04875 are separated by 269 nucleotides AO356_04865: AO356_04865 - hypothetical protein, at 1,093,253 to 1,093,768 _04865 AO356_04870: AO356_04870 - TetR family transcriptional regulator, at 1,093,982 to 1,094,614 _04870 AO356_04875: AO356_04875 - antibiotic transporter, at 1,094,884 to 1,096,041 _04875 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1093.040 kb on - strandat 1093.119 kb on - strandat 1093.166 kb on + strandat 1093.232 kb on - strandat 1093.232 kb on - strandat 1093.235 kb on + strandat 1093.236 kb on - strandat 1093.236 kb on - strandat 1093.236 kb on - strandat 1093.236 kb on - strandat 1093.454 kb on - strand, within AO356_04865at 1093.634 kb on + strand, within AO356_04865at 1093.634 kb on + strand, within AO356_04865at 1093.634 kb on + strand, within AO356_04865at 1093.634 kb on + strand, within AO356_04865at 1093.634 kb on + strand, within AO356_04865at 1093.634 kb on + strand, within AO356_04865at 1093.635 kb on - strand, within AO356_04865at 1093.635 kb on - strand, within AO356_04865at 1093.636 kb on + strand, within AO356_04865at 1093.637 kb on - strand, within AO356_04865at 1093.664 kb on + strand, within AO356_04865at 1093.664 kb on + strand, within AO356_04865at 1093.665 kb on - strand, within AO356_04865at 1093.665 kb on - strand, within AO356_04865at 1093.682 kb on + strand, within AO356_04865at 1093.733 kb on + strandat 1093.733 kb on + strandat 1093.734 kb on - strandat 1093.751 kb on - strandat 1093.821 kb on + strandat 1093.821 kb on + strandat 1093.821 kb on + strandat 1093.821 kb on + strandat 1093.822 kb on - strandat 1093.822 kb on - strandat 1093.822 kb on - strandat 1093.822 kb on - strandat 1093.925 kb on + strandat 1093.926 kb on - strandat 1093.933 kb on - strandat 1093.969 kb on + strandat 1094.014 kb on + strandat 1094.015 kb on - strandat 1094.106 kb on + strand, within AO356_04870at 1094.106 kb on + strand, within AO356_04870at 1094.106 kb on + strand, within AO356_04870at 1094.107 kb on - strand, within AO356_04870at 1094.107 kb on - strand, within AO356_04870at 1094.107 kb on - strand, within AO356_04870at 1094.203 kb on + strand, within AO356_04870at 1094.203 kb on + strand, within AO356_04870at 1094.203 kb on + strand, within AO356_04870at 1094.204 kb on - strand, within AO356_04870at 1094.204 kb on - strand, within AO356_04870at 1094.204 kb on - strand, within AO356_04870at 1094.269 kb on + strand, within AO356_04870at 1094.269 kb on + strand, within AO356_04870at 1094.269 kb on + strand, within AO356_04870at 1094.269 kb on + strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.270 kb on - strand, within AO356_04870at 1094.469 kb on + strand, within AO356_04870at 1094.469 kb on + strand, within AO356_04870at 1094.469 kb on + strand, within AO356_04870at 1094.470 kb on - strand, within AO356_04870at 1094.470 kb on - strand, within AO356_04870at 1094.470 kb on - strand, within AO356_04870at 1094.470 kb on - strand, within AO356_04870at 1094.470 kb on - strand, within AO356_04870at 1094.470 kb on - strand, within AO356_04870at 1094.470 kb on - strand, within AO356_04870at 1094.473 kb on + strand, within AO356_04870at 1094.473 kb on + strand, within AO356_04870at 1094.473 kb on + strand, within AO356_04870at 1094.474 kb on - strand, within AO356_04870at 1094.474 kb on - strand, within AO356_04870at 1094.474 kb on - strand, within AO356_04870at 1094.474 kb on - strand, within AO356_04870at 1094.474 kb on - strand, within AO356_04870at 1094.567 kb on + strandat 1094.567 kb on + strandat 1094.568 kb on - strandat 1094.568 kb on - strandat 1094.621 kb on - strandat 1094.621 kb on - strandat 1094.654 kb on + strandat 1094.655 kb on - strandat 1094.655 kb on - strandat 1094.655 kb on - strandat 1094.655 kb on - strandat 1094.675 kb on - strandat 1094.675 kb on - strandat 1094.713 kb on - strandat 1094.713 kb on - strandat 1094.713 kb on - strandat 1094.739 kb on - strandat 1094.739 kb on - strandat 1094.749 kb on - strandat 1094.752 kb on - strandat 1094.787 kb on - strandat 1094.819 kb on + strandat 1094.820 kb on - strandat 1095.003 kb on - strand, within AO356_04875at 1095.077 kb on + strand, within AO356_04875at 1095.077 kb on + strand, within AO356_04875at 1095.078 kb on - strand, within AO356_04875at 1095.155 kb on - strand, within AO356_04875at 1095.175 kb on + strand, within AO356_04875at 1095.176 kb on - strand, within AO356_04875at 1095.239 kb on - strand, within AO356_04875at 1095.280 kb on + strand, within AO356_04875at 1095.280 kb on + strand, within AO356_04875at 1095.281 kb on - strand, within AO356_04875at 1095.281 kb on - strand, within AO356_04875at 1095.281 kb on - strand, within AO356_04875at 1095.281 kb on - strand, within AO356_04875at 1095.350 kb on - strand, within AO356_04875at 1095.362 kb on - strand, within AO356_04875at 1095.362 kb on - strand, within AO356_04875at 1095.362 kb on - strand, within AO356_04875at 1095.469 kb on + strand, within AO356_04875at 1095.469 kb on + strand, within AO356_04875at 1095.469 kb on + strand, within AO356_04875at 1095.469 kb on + strand, within AO356_04875at 1095.469 kb on + strand, within AO356_04875at 1095.469 kb on + strand, within AO356_04875at 1095.470 kb on - strand, within AO356_04875at 1095.470 kb on - strand, within AO356_04875at 1095.470 kb on - strand, within AO356_04875

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,093,040 - -0.6
1,093,119 - +0.7
1,093,166 + -0.5
1,093,232 - -0.2
1,093,232 - -1.5
1,093,235 + -0.3
1,093,236 - +0.7
1,093,236 - +0.9
1,093,236 - +0.1
1,093,236 - +0.3
1,093,454 - AO356_04865 0.39 +0.3
1,093,634 + AO356_04865 0.74 +0.5
1,093,634 + AO356_04865 0.74 +0.1
1,093,634 + AO356_04865 0.74 -0.5
1,093,634 + AO356_04865 0.74 -1.0
1,093,634 + AO356_04865 0.74 +0.0
1,093,634 + AO356_04865 0.74 -0.3
1,093,635 - AO356_04865 0.74 -0.0
1,093,635 - AO356_04865 0.74 +0.4
1,093,636 + AO356_04865 0.74 -0.5
1,093,637 - AO356_04865 0.74 -0.1
1,093,664 + AO356_04865 0.80 -0.9
1,093,664 + AO356_04865 0.80 +0.6
1,093,665 - AO356_04865 0.80 -0.0
1,093,665 - AO356_04865 0.80 +0.5
1,093,682 + AO356_04865 0.83 +0.8
1,093,733 + -1.0
1,093,733 + +0.1
1,093,734 - -0.4
1,093,751 - +0.1
1,093,821 + -0.4
1,093,821 + -1.0
1,093,821 + -0.2
1,093,821 + -0.1
1,093,822 - +1.0
1,093,822 - +0.8
1,093,822 - -0.3
1,093,822 - -0.5
1,093,925 + -1.4
1,093,926 - +0.6
1,093,933 - -0.1
1,093,969 + -0.9
1,094,014 + -0.5
1,094,015 - -2.3
1,094,106 + AO356_04870 0.20 +0.0
1,094,106 + AO356_04870 0.20 -1.5
1,094,106 + AO356_04870 0.20 -3.2
1,094,107 - AO356_04870 0.20 +0.9
1,094,107 - AO356_04870 0.20 -2.1
1,094,107 - AO356_04870 0.20 -1.9
1,094,203 + AO356_04870 0.35 -0.5
1,094,203 + AO356_04870 0.35 -1.6
1,094,203 + AO356_04870 0.35 -0.4
1,094,204 - AO356_04870 0.35 -0.0
1,094,204 - AO356_04870 0.35 -0.9
1,094,204 - AO356_04870 0.35 -0.8
1,094,269 + AO356_04870 0.45 -1.7
1,094,269 + AO356_04870 0.45 -2.5
1,094,269 + AO356_04870 0.45 -2.5
1,094,269 + AO356_04870 0.45 -3.0
1,094,270 - AO356_04870 0.45 +0.3
1,094,270 - AO356_04870 0.45 -2.8
1,094,270 - AO356_04870 0.45 -2.2
1,094,270 - AO356_04870 0.45 -1.1
1,094,270 - AO356_04870 0.45 -2.1
1,094,270 - AO356_04870 0.45 -0.8
1,094,270 - AO356_04870 0.45 +1.3
1,094,270 - AO356_04870 0.45 -2.4
1,094,270 - AO356_04870 0.45 -0.6
1,094,270 - AO356_04870 0.45 -0.6
1,094,469 + AO356_04870 0.77 -2.3
1,094,469 + AO356_04870 0.77 -2.4
1,094,469 + AO356_04870 0.77 -2.1
1,094,470 - AO356_04870 0.77 -1.3
1,094,470 - AO356_04870 0.77 -2.4
1,094,470 - AO356_04870 0.77 -1.4
1,094,470 - AO356_04870 0.77 -1.2
1,094,470 - AO356_04870 0.77 -1.4
1,094,470 - AO356_04870 0.77 -0.9
1,094,470 - AO356_04870 0.77 -0.9
1,094,473 + AO356_04870 0.78 -1.3
1,094,473 + AO356_04870 0.78 -1.8
1,094,473 + AO356_04870 0.78 -2.9
1,094,474 - AO356_04870 0.78 -1.8
1,094,474 - AO356_04870 0.78 -1.0
1,094,474 - AO356_04870 0.78 -0.6
1,094,474 - AO356_04870 0.78 -2.4
1,094,474 - AO356_04870 0.78 -1.3
1,094,567 + -1.9
1,094,567 + -2.9
1,094,568 - +0.6
1,094,568 - -0.7
1,094,621 - -0.9
1,094,621 - -0.3
1,094,654 + -2.6
1,094,655 - +1.5
1,094,655 - -0.6
1,094,655 - +0.5
1,094,655 - +0.7
1,094,675 - +0.1
1,094,675 - +0.3
1,094,713 - +0.0
1,094,713 - +0.8
1,094,713 - +0.6
1,094,739 - +0.5
1,094,739 - +1.2
1,094,749 - +1.2
1,094,752 - +0.2
1,094,787 - -1.0
1,094,819 + -2.9
1,094,820 - +1.3
1,095,003 - AO356_04875 0.10 +1.3
1,095,077 + AO356_04875 0.17 +0.4
1,095,077 + AO356_04875 0.17 +1.7
1,095,078 - AO356_04875 0.17 +0.8
1,095,155 - AO356_04875 0.23 +0.8
1,095,175 + AO356_04875 0.25 +0.9
1,095,176 - AO356_04875 0.25 +1.5
1,095,239 - AO356_04875 0.31 +1.2
1,095,280 + AO356_04875 0.34 +0.3
1,095,280 + AO356_04875 0.34 +0.7
1,095,281 - AO356_04875 0.34 +1.0
1,095,281 - AO356_04875 0.34 +0.8
1,095,281 - AO356_04875 0.34 +0.5
1,095,281 - AO356_04875 0.34 +1.5
1,095,350 - AO356_04875 0.40 +1.1
1,095,362 - AO356_04875 0.41 +2.0
1,095,362 - AO356_04875 0.41 +0.6
1,095,362 - AO356_04875 0.41 +1.6
1,095,469 + AO356_04875 0.51 +1.0
1,095,469 + AO356_04875 0.51 +0.3
1,095,469 + AO356_04875 0.51 -0.7
1,095,469 + AO356_04875 0.51 +1.1
1,095,469 + AO356_04875 0.51 +1.1
1,095,469 + AO356_04875 0.51 +1.1
1,095,470 - AO356_04875 0.51 +1.0
1,095,470 - AO356_04875 0.51 -1.3
1,095,470 - AO356_04875 0.51 +1.3

Or see this region's nucleotide sequence