Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04560

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04555 and AO356_04560 are separated by 61 nucleotidesAO356_04560 and AO356_04565 are separated by 234 nucleotides AO356_04555: AO356_04555 - peptidase M48, at 1,026,342 to 1,027,775 _04555 AO356_04560: AO356_04560 - serine peptidase, at 1,027,837 to 1,029,267 _04560 AO356_04565: AO356_04565 - RNA polymerase subunit sigma, at 1,029,502 to 1,030,449 _04565 Position (kb) 1027 1028 1029 1030Strain fitness (log2 ratio) -2 -1 0 1at 1027.137 kb on + strand, within AO356_04555at 1027.171 kb on - strand, within AO356_04555at 1027.171 kb on - strand, within AO356_04555at 1027.171 kb on - strand, within AO356_04555at 1027.344 kb on + strand, within AO356_04555at 1027.344 kb on + strand, within AO356_04555at 1027.344 kb on + strand, within AO356_04555at 1027.344 kb on + strand, within AO356_04555at 1027.344 kb on + strand, within AO356_04555at 1027.344 kb on + strand, within AO356_04555at 1027.344 kb on + strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.345 kb on - strand, within AO356_04555at 1027.429 kb on - strand, within AO356_04555at 1027.440 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.554 kb on + strand, within AO356_04555at 1027.555 kb on - strand, within AO356_04555at 1027.620 kb on + strand, within AO356_04555at 1027.620 kb on + strand, within AO356_04555at 1027.621 kb on - strand, within AO356_04555at 1027.790 kb on + strandat 1028.391 kb on + strand, within AO356_04560at 1028.556 kb on - strand, within AO356_04560at 1028.556 kb on - strand, within AO356_04560at 1028.939 kb on + strand, within AO356_04560at 1028.940 kb on - strand, within AO356_04560at 1028.940 kb on - strand, within AO356_04560at 1028.940 kb on - strand, within AO356_04560at 1029.242 kb on + strandat 1029.243 kb on - strandat 1029.267 kb on + strandat 1029.267 kb on + strandat 1029.267 kb on + strandat 1029.268 kb on - strandat 1029.268 kb on - strandat 1029.294 kb on + strandat 1029.315 kb on + strandat 1029.328 kb on + strandat 1029.329 kb on - strandat 1029.329 kb on - strandat 1029.329 kb on - strandat 1029.336 kb on + strandat 1029.384 kb on + strandat 1029.387 kb on - strandat 1029.719 kb on + strand, within AO356_04565at 1029.719 kb on + strand, within AO356_04565at 1029.719 kb on + strand, within AO356_04565at 1029.719 kb on + strand, within AO356_04565at 1029.720 kb on - strand, within AO356_04565at 1029.720 kb on - strand, within AO356_04565at 1029.720 kb on - strand, within AO356_04565at 1029.720 kb on - strand, within AO356_04565at 1029.720 kb on - strand, within AO356_04565at 1030.081 kb on + strand, within AO356_04565at 1030.149 kb on + strand, within AO356_04565at 1030.191 kb on + strand, within AO356_04565at 1030.191 kb on + strand, within AO356_04565at 1030.191 kb on + strand, within AO356_04565at 1030.191 kb on + strand, within AO356_04565at 1030.191 kb on + strand, within AO356_04565at 1030.192 kb on - strand, within AO356_04565at 1030.192 kb on - strand, within AO356_04565

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,027,137 + AO356_04555 0.55 +0.9
1,027,171 - AO356_04555 0.58 +0.4
1,027,171 - AO356_04555 0.58 +0.4
1,027,171 - AO356_04555 0.58 -0.2
1,027,344 + AO356_04555 0.70 -0.6
1,027,344 + AO356_04555 0.70 +0.7
1,027,344 + AO356_04555 0.70 -0.3
1,027,344 + AO356_04555 0.70 -0.4
1,027,344 + AO356_04555 0.70 +0.4
1,027,344 + AO356_04555 0.70 +0.2
1,027,344 + AO356_04555 0.70 -0.0
1,027,345 - AO356_04555 0.70 -1.8
1,027,345 - AO356_04555 0.70 +0.5
1,027,345 - AO356_04555 0.70 -0.3
1,027,345 - AO356_04555 0.70 +1.0
1,027,345 - AO356_04555 0.70 +0.2
1,027,345 - AO356_04555 0.70 +0.5
1,027,345 - AO356_04555 0.70 -1.3
1,027,345 - AO356_04555 0.70 -0.3
1,027,429 - AO356_04555 0.76 +0.1
1,027,440 + AO356_04555 0.77 +1.3
1,027,554 + AO356_04555 0.85 +0.2
1,027,554 + AO356_04555 0.85 +0.5
1,027,554 + AO356_04555 0.85 -2.0
1,027,554 + AO356_04555 0.85 +0.7
1,027,554 + AO356_04555 0.85 +0.8
1,027,554 + AO356_04555 0.85 -0.2
1,027,554 + AO356_04555 0.85 -0.5
1,027,554 + AO356_04555 0.85 -0.0
1,027,555 - AO356_04555 0.85 +0.4
1,027,620 + AO356_04555 0.89 +0.3
1,027,620 + AO356_04555 0.89 +1.0
1,027,621 - AO356_04555 0.89 +0.0
1,027,790 + +0.5
1,028,391 + AO356_04560 0.39 -1.0
1,028,556 - AO356_04560 0.50 -1.0
1,028,556 - AO356_04560 0.50 -0.3
1,028,939 + AO356_04560 0.77 -0.3
1,028,940 - AO356_04560 0.77 +0.7
1,028,940 - AO356_04560 0.77 -0.7
1,028,940 - AO356_04560 0.77 -0.3
1,029,242 + +1.7
1,029,243 - +1.3
1,029,267 + -2.0
1,029,267 + -0.2
1,029,267 + -0.7
1,029,268 - +0.2
1,029,268 - -0.3
1,029,294 + +0.1
1,029,315 + +1.3
1,029,328 + +0.7
1,029,329 - +0.8
1,029,329 - -0.4
1,029,329 - +0.2
1,029,336 + -0.4
1,029,384 + -0.2
1,029,387 - +0.7
1,029,719 + AO356_04565 0.23 +0.6
1,029,719 + AO356_04565 0.23 +0.6
1,029,719 + AO356_04565 0.23 +0.5
1,029,719 + AO356_04565 0.23 +0.2
1,029,720 - AO356_04565 0.23 -0.1
1,029,720 - AO356_04565 0.23 +0.2
1,029,720 - AO356_04565 0.23 -0.6
1,029,720 - AO356_04565 0.23 -0.0
1,029,720 - AO356_04565 0.23 -0.2
1,030,081 + AO356_04565 0.61 -0.4
1,030,149 + AO356_04565 0.68 +1.0
1,030,191 + AO356_04565 0.73 +1.2
1,030,191 + AO356_04565 0.73 +1.2
1,030,191 + AO356_04565 0.73 +0.1
1,030,191 + AO356_04565 0.73 +0.8
1,030,191 + AO356_04565 0.73 +0.7
1,030,192 - AO356_04565 0.73 -2.4
1,030,192 - AO356_04565 0.73 +0.2

Or see this region's nucleotide sequence