Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04550

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04545 and AO356_04550 are separated by 32 nucleotidesAO356_04550 and AO356_04555 are separated by 98 nucleotides AO356_04545: AO356_04545 - permease, at 1,024,901 to 1,025,971 _04545 AO356_04550: AO356_04550 - response regulator SirA, at 1,026,004 to 1,026,243 _04550 AO356_04555: AO356_04555 - peptidase M48, at 1,026,342 to 1,027,775 _04555 Position (kb) 1026 1027Strain fitness (log2 ratio) -1 0 1 2at 1025.134 kb on - strand, within AO356_04545at 1025.134 kb on - strand, within AO356_04545at 1025.211 kb on + strand, within AO356_04545at 1025.211 kb on + strand, within AO356_04545at 1025.212 kb on - strand, within AO356_04545at 1025.259 kb on + strand, within AO356_04545at 1025.260 kb on - strand, within AO356_04545at 1025.260 kb on - strand, within AO356_04545at 1025.289 kb on + strand, within AO356_04545at 1025.289 kb on + strand, within AO356_04545at 1025.289 kb on + strand, within AO356_04545at 1025.289 kb on + strand, within AO356_04545at 1025.289 kb on + strand, within AO356_04545at 1025.289 kb on + strand, within AO356_04545at 1025.289 kb on + strand, within AO356_04545at 1025.290 kb on - strand, within AO356_04545at 1025.290 kb on - strand, within AO356_04545at 1025.290 kb on - strand, within AO356_04545at 1025.290 kb on - strand, within AO356_04545at 1025.290 kb on - strand, within AO356_04545at 1025.337 kb on + strand, within AO356_04545at 1025.337 kb on + strand, within AO356_04545at 1025.338 kb on - strand, within AO356_04545at 1025.403 kb on + strand, within AO356_04545at 1025.403 kb on + strand, within AO356_04545at 1025.478 kb on + strand, within AO356_04545at 1025.478 kb on + strand, within AO356_04545at 1025.478 kb on + strand, within AO356_04545at 1025.479 kb on - strand, within AO356_04545at 1025.479 kb on - strand, within AO356_04545at 1025.621 kb on + strand, within AO356_04545at 1025.622 kb on - strand, within AO356_04545at 1025.630 kb on + strand, within AO356_04545at 1025.630 kb on + strand, within AO356_04545at 1025.630 kb on + strand, within AO356_04545at 1025.630 kb on + strand, within AO356_04545at 1025.631 kb on - strand, within AO356_04545at 1025.631 kb on - strand, within AO356_04545at 1025.631 kb on - strand, within AO356_04545at 1025.712 kb on - strand, within AO356_04545at 1025.720 kb on - strand, within AO356_04545at 1025.720 kb on - strand, within AO356_04545at 1025.720 kb on - strand, within AO356_04545at 1025.823 kb on + strand, within AO356_04545at 1025.824 kb on - strand, within AO356_04545at 1025.824 kb on - strand, within AO356_04545at 1025.824 kb on - strand, within AO356_04545at 1025.824 kb on - strand, within AO356_04545at 1025.872 kb on + strandat 1025.873 kb on - strandat 1025.937 kb on + strandat 1025.938 kb on - strandat 1025.938 kb on - strandat 1025.938 kb on - strandat 1025.973 kb on - strandat 1025.993 kb on - strandat 1026.024 kb on - strandat 1026.029 kb on + strand, within AO356_04550at 1026.030 kb on - strand, within AO356_04550at 1026.063 kb on + strand, within AO356_04550at 1026.063 kb on + strand, within AO356_04550at 1026.064 kb on - strand, within AO356_04550at 1026.230 kb on - strandat 1026.281 kb on + strandat 1026.281 kb on + strandat 1026.281 kb on + strandat 1026.281 kb on + strandat 1026.281 kb on + strandat 1026.281 kb on + strandat 1026.281 kb on + strandat 1026.282 kb on - strandat 1026.282 kb on - strandat 1026.282 kb on - strandat 1026.282 kb on - strandat 1026.313 kb on + strandat 1026.313 kb on + strandat 1026.313 kb on + strandat 1026.314 kb on - strandat 1026.314 kb on - strandat 1026.314 kb on - strandat 1026.330 kb on - strandat 1026.330 kb on - strandat 1026.537 kb on + strand, within AO356_04555at 1026.537 kb on + strand, within AO356_04555at 1026.537 kb on + strand, within AO356_04555at 1026.538 kb on - strand, within AO356_04555at 1026.555 kb on + strand, within AO356_04555at 1026.556 kb on - strand, within AO356_04555at 1026.702 kb on + strand, within AO356_04555at 1027.137 kb on + strand, within AO356_04555at 1027.171 kb on - strand, within AO356_04555at 1027.171 kb on - strand, within AO356_04555at 1027.171 kb on - strand, within AO356_04555

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,025,134 - AO356_04545 0.22 -0.6
1,025,134 - AO356_04545 0.22 +0.7
1,025,211 + AO356_04545 0.29 +1.1
1,025,211 + AO356_04545 0.29 -0.9
1,025,212 - AO356_04545 0.29 +0.6
1,025,259 + AO356_04545 0.33 +0.3
1,025,260 - AO356_04545 0.34 -0.5
1,025,260 - AO356_04545 0.34 -0.8
1,025,289 + AO356_04545 0.36 -0.3
1,025,289 + AO356_04545 0.36 +0.9
1,025,289 + AO356_04545 0.36 -0.2
1,025,289 + AO356_04545 0.36 +0.5
1,025,289 + AO356_04545 0.36 +0.4
1,025,289 + AO356_04545 0.36 +0.0
1,025,289 + AO356_04545 0.36 +0.3
1,025,290 - AO356_04545 0.36 +0.3
1,025,290 - AO356_04545 0.36 +0.0
1,025,290 - AO356_04545 0.36 +1.0
1,025,290 - AO356_04545 0.36 +1.3
1,025,290 - AO356_04545 0.36 +1.0
1,025,337 + AO356_04545 0.41 +0.5
1,025,337 + AO356_04545 0.41 +0.7
1,025,338 - AO356_04545 0.41 -0.7
1,025,403 + AO356_04545 0.47 -0.6
1,025,403 + AO356_04545 0.47 -0.5
1,025,478 + AO356_04545 0.54 +0.9
1,025,478 + AO356_04545 0.54 +1.0
1,025,478 + AO356_04545 0.54 +0.2
1,025,479 - AO356_04545 0.54 +0.6
1,025,479 - AO356_04545 0.54 -1.1
1,025,621 + AO356_04545 0.67 -0.1
1,025,622 - AO356_04545 0.67 -0.7
1,025,630 + AO356_04545 0.68 +0.8
1,025,630 + AO356_04545 0.68 -0.5
1,025,630 + AO356_04545 0.68 +0.3
1,025,630 + AO356_04545 0.68 +0.7
1,025,631 - AO356_04545 0.68 -0.1
1,025,631 - AO356_04545 0.68 +0.3
1,025,631 - AO356_04545 0.68 -0.0
1,025,712 - AO356_04545 0.76 +0.4
1,025,720 - AO356_04545 0.76 -0.3
1,025,720 - AO356_04545 0.76 -1.0
1,025,720 - AO356_04545 0.76 -0.2
1,025,823 + AO356_04545 0.86 -0.4
1,025,824 - AO356_04545 0.86 +0.4
1,025,824 - AO356_04545 0.86 +1.0
1,025,824 - AO356_04545 0.86 -1.5
1,025,824 - AO356_04545 0.86 +0.4
1,025,872 + -0.3
1,025,873 - +0.2
1,025,937 + +0.9
1,025,938 - -0.1
1,025,938 - +0.6
1,025,938 - -0.4
1,025,973 - +0.2
1,025,993 - -1.5
1,026,024 - +1.1
1,026,029 + AO356_04550 0.10 +0.6
1,026,030 - AO356_04550 0.11 -0.5
1,026,063 + AO356_04550 0.25 +1.2
1,026,063 + AO356_04550 0.25 +1.2
1,026,064 - AO356_04550 0.25 +0.6
1,026,230 - +0.3
1,026,281 + -1.2
1,026,281 + -1.0
1,026,281 + -0.2
1,026,281 + -0.3
1,026,281 + +0.4
1,026,281 + -0.4
1,026,281 + -0.8
1,026,282 - +0.1
1,026,282 - +0.1
1,026,282 - +0.3
1,026,282 - -1.0
1,026,313 + -0.8
1,026,313 + -1.1
1,026,313 + -0.7
1,026,314 - -0.3
1,026,314 - +0.9
1,026,314 - -1.0
1,026,330 - +1.6
1,026,330 - +0.4
1,026,537 + AO356_04555 0.14 -0.2
1,026,537 + AO356_04555 0.14 +0.1
1,026,537 + AO356_04555 0.14 +0.9
1,026,538 - AO356_04555 0.14 +0.4
1,026,555 + AO356_04555 0.15 +2.4
1,026,556 - AO356_04555 0.15 +1.3
1,026,702 + AO356_04555 0.25 -0.8
1,027,137 + AO356_04555 0.55 +0.9
1,027,171 - AO356_04555 0.58 +0.4
1,027,171 - AO356_04555 0.58 +0.4
1,027,171 - AO356_04555 0.58 -0.2

Or see this region's nucleotide sequence