Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04020

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04015 and AO356_04020 are separated by 135 nucleotidesAO356_04020 and AO356_04025 are separated by 228 nucleotides AO356_04015: AO356_04015 - serine/threonine protein phosphatase, at 893,052 to 893,870 _04015 AO356_04020: AO356_04020 - AraC family transcriptional regulator, at 894,006 to 894,755 _04020 AO356_04025: AO356_04025 - hypothetical protein, at 894,984 to 895,874 _04025 Position (kb) 894 895Strain fitness (log2 ratio) -2 -1 0 1 2at 893.020 kb on + strandat 893.020 kb on + strandat 893.020 kb on + strandat 893.020 kb on + strandat 893.020 kb on + strandat 893.020 kb on + strandat 893.020 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.022 kb on + strandat 893.053 kb on + strandat 893.194 kb on + strand, within AO356_04015at 893.195 kb on - strand, within AO356_04015at 893.195 kb on - strand, within AO356_04015at 893.234 kb on + strand, within AO356_04015at 893.234 kb on + strand, within AO356_04015at 893.234 kb on + strand, within AO356_04015at 893.234 kb on + strand, within AO356_04015at 893.235 kb on - strand, within AO356_04015at 893.235 kb on - strand, within AO356_04015at 893.235 kb on - strand, within AO356_04015at 893.235 kb on - strand, within AO356_04015at 893.341 kb on + strand, within AO356_04015at 893.341 kb on + strand, within AO356_04015at 893.608 kb on + strand, within AO356_04015at 893.608 kb on + strand, within AO356_04015at 893.608 kb on + strand, within AO356_04015at 893.608 kb on + strand, within AO356_04015at 893.608 kb on + strand, within AO356_04015at 893.608 kb on + strand, within AO356_04015at 893.608 kb on + strand, within AO356_04015at 893.609 kb on - strand, within AO356_04015at 893.609 kb on - strand, within AO356_04015at 893.609 kb on - strand, within AO356_04015at 893.609 kb on - strand, within AO356_04015at 893.609 kb on - strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.680 kb on + strand, within AO356_04015at 893.681 kb on - strand, within AO356_04015at 893.681 kb on - strand, within AO356_04015at 893.681 kb on - strand, within AO356_04015at 893.681 kb on - strand, within AO356_04015at 893.681 kb on - strand, within AO356_04015at 893.681 kb on - strand, within AO356_04015at 893.681 kb on - strand, within AO356_04015at 893.728 kb on + strand, within AO356_04015at 893.728 kb on + strand, within AO356_04015at 893.728 kb on + strand, within AO356_04015at 893.728 kb on + strand, within AO356_04015at 893.729 kb on - strand, within AO356_04015at 893.746 kb on + strand, within AO356_04015at 893.747 kb on - strand, within AO356_04015at 893.943 kb on + strandat 893.943 kb on + strandat 893.943 kb on + strandat 893.944 kb on - strandat 893.944 kb on - strandat 893.944 kb on - strandat 893.944 kb on - strandat 893.944 kb on - strandat 893.976 kb on + strandat 893.976 kb on + strandat 893.977 kb on - strandat 893.977 kb on - strandat 893.977 kb on - strandat 894.025 kb on + strandat 894.033 kb on + strandat 894.033 kb on + strandat 894.033 kb on + strandat 894.154 kb on + strand, within AO356_04020at 894.395 kb on - strand, within AO356_04020at 894.588 kb on + strand, within AO356_04020at 894.588 kb on + strand, within AO356_04020at 894.588 kb on + strand, within AO356_04020at 894.588 kb on + strand, within AO356_04020at 894.589 kb on - strand, within AO356_04020at 894.589 kb on - strand, within AO356_04020at 894.791 kb on + strandat 894.791 kb on + strandat 894.791 kb on + strandat 894.791 kb on + strandat 894.792 kb on - strandat 894.810 kb on + strandat 894.810 kb on + strandat 894.811 kb on - strandat 894.811 kb on - strandat 894.811 kb on - strandat 894.814 kb on + strandat 894.815 kb on - strandat 894.877 kb on + strandat 894.878 kb on - strandat 894.878 kb on - strandat 894.878 kb on - strandat 894.891 kb on + strandat 894.892 kb on - strandat 895.504 kb on + strand, within AO356_04025at 895.505 kb on - strand, within AO356_04025

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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893,020 + +0.6
893,020 + +0.8
893,020 + +0.5
893,020 + +1.3
893,020 + -0.4
893,020 + +0.6
893,020 + -1.1
893,022 + -0.0
893,022 + +0.1
893,022 + +0.4
893,022 + +1.5
893,022 + +0.3
893,022 + +0.3
893,022 + +0.3
893,022 + +0.8
893,022 + +0.4
893,022 + +0.4
893,022 + +0.5
893,022 + -0.2
893,022 + +1.1
893,022 + +0.4
893,022 + +0.4
893,022 + +0.1
893,022 + -1.2
893,053 + -0.0
893,194 + AO356_04015 0.17 -0.9
893,195 - AO356_04015 0.17 +0.5
893,195 - AO356_04015 0.17 -0.5
893,234 + AO356_04015 0.22 +0.4
893,234 + AO356_04015 0.22 +0.1
893,234 + AO356_04015 0.22 +1.0
893,234 + AO356_04015 0.22 -0.5
893,235 - AO356_04015 0.22 +0.9
893,235 - AO356_04015 0.22 +0.1
893,235 - AO356_04015 0.22 +0.6
893,235 - AO356_04015 0.22 -0.4
893,341 + AO356_04015 0.35 -1.3
893,341 + AO356_04015 0.35 +0.3
893,608 + AO356_04015 0.68 -0.4
893,608 + AO356_04015 0.68 +0.0
893,608 + AO356_04015 0.68 +0.5
893,608 + AO356_04015 0.68 -1.0
893,608 + AO356_04015 0.68 +0.0
893,608 + AO356_04015 0.68 -0.5
893,608 + AO356_04015 0.68 +0.1
893,609 - AO356_04015 0.68 -1.2
893,609 - AO356_04015 0.68 -0.8
893,609 - AO356_04015 0.68 +0.1
893,609 - AO356_04015 0.68 -0.7
893,609 - AO356_04015 0.68 +0.6
893,680 + AO356_04015 0.77 +0.9
893,680 + AO356_04015 0.77 +0.3
893,680 + AO356_04015 0.77 +0.4
893,680 + AO356_04015 0.77 +0.6
893,680 + AO356_04015 0.77 -1.4
893,680 + AO356_04015 0.77 -0.5
893,680 + AO356_04015 0.77 +0.3
893,680 + AO356_04015 0.77 +1.6
893,680 + AO356_04015 0.77 -0.5
893,680 + AO356_04015 0.77 +0.1
893,680 + AO356_04015 0.77 +0.4
893,681 - AO356_04015 0.77 +1.0
893,681 - AO356_04015 0.77 +1.1
893,681 - AO356_04015 0.77 -0.5
893,681 - AO356_04015 0.77 -0.1
893,681 - AO356_04015 0.77 +0.0
893,681 - AO356_04015 0.77 +0.9
893,681 - AO356_04015 0.77 +0.1
893,728 + AO356_04015 0.83 -0.5
893,728 + AO356_04015 0.83 -0.3
893,728 + AO356_04015 0.83 +0.7
893,728 + AO356_04015 0.83 +1.3
893,729 - AO356_04015 0.83 +1.3
893,746 + AO356_04015 0.85 -0.4
893,747 - AO356_04015 0.85 -0.2
893,943 + +0.3
893,943 + -0.6
893,943 + -0.2
893,944 - +0.0
893,944 - +0.8
893,944 - +0.0
893,944 - -0.8
893,944 - -0.8
893,976 + -2.1
893,976 + +0.2
893,977 - +0.6
893,977 - +1.8
893,977 - +0.3
894,025 + -0.5
894,033 + +0.7
894,033 + -2.1
894,033 + -0.6
894,154 + AO356_04020 0.20 -0.6
894,395 - AO356_04020 0.52 +1.3
894,588 + AO356_04020 0.78 -1.4
894,588 + AO356_04020 0.78 +0.4
894,588 + AO356_04020 0.78 -1.3
894,588 + AO356_04020 0.78 -0.4
894,589 - AO356_04020 0.78 -0.3
894,589 - AO356_04020 0.78 -0.1
894,791 + +0.1
894,791 + +0.3
894,791 + +0.1
894,791 + -1.9
894,792 - +0.1
894,810 + +0.7
894,810 + +0.8
894,811 - +1.1
894,811 - +0.1
894,811 - -0.4
894,814 + -0.2
894,815 - -0.2
894,877 + +0.1
894,878 - +0.6
894,878 - +0.5
894,878 - +0.7
894,891 + +0.3
894,892 - +0.2
895,504 + AO356_04025 0.58 +0.7
895,505 - AO356_04025 0.58 +0.8

Or see this region's nucleotide sequence