Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03975

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03970 and AO356_03975 are separated by 350 nucleotidesAO356_03975 and AO356_03980 are separated by 99 nucleotidesAO356_03980 and AO356_03985 overlap by 1 nucleotides AO356_03970: AO356_03970 - AAA family ATPase, at 884,158 to 885,717 _03970 AO356_03975: AO356_03975 - Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data), at 886,068 to 886,853 _03975 AO356_03980: AO356_03980 - pterin-4-alpha-carbinolamine dehydratase, at 886,953 to 887,309 _03980 AO356_03985: AO356_03985 - L-phenylalanine transaminase (EC 2.6.1.57) (from data), at 887,309 to 888,502 _03985 Position (kb) 886 887Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 885.135 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.137 kb on + strand, within AO356_03970at 885.138 kb on - strand, within AO356_03970at 885.138 kb on - strand, within AO356_03970at 885.138 kb on - strand, within AO356_03970at 885.502 kb on + strand, within AO356_03970at 885.502 kb on + strand, within AO356_03970at 885.503 kb on - strand, within AO356_03970at 885.593 kb on + strandat 885.593 kb on + strandat 885.593 kb on + strandat 885.594 kb on - strandat 885.594 kb on - strandat 885.594 kb on - strandat 885.648 kb on - strandat 885.840 kb on - strandat 885.852 kb on + strandat 885.904 kb on + strandat 885.904 kb on + strandat 885.905 kb on - strandat 885.905 kb on - strandat 885.905 kb on - strandat 885.906 kb on + strandat 885.906 kb on + strandat 885.906 kb on + strandat 885.919 kb on - strandat 885.925 kb on - strandat 885.972 kb on + strandat 885.997 kb on + strandat 886.003 kb on + strandat 886.004 kb on - strandat 886.004 kb on - strandat 886.020 kb on + strandat 886.021 kb on - strandat 886.083 kb on + strandat 886.083 kb on + strandat 886.084 kb on - strandat 886.084 kb on - strandat 886.122 kb on + strandat 886.122 kb on + strandat 886.122 kb on + strandat 886.123 kb on - strandat 886.123 kb on - strandat 886.203 kb on + strand, within AO356_03975at 886.203 kb on + strand, within AO356_03975at 886.204 kb on - strand, within AO356_03975at 886.204 kb on - strand, within AO356_03975at 886.204 kb on - strand, within AO356_03975at 886.379 kb on + strand, within AO356_03975at 886.379 kb on + strand, within AO356_03975at 886.379 kb on + strand, within AO356_03975at 886.380 kb on - strand, within AO356_03975at 886.404 kb on + strand, within AO356_03975at 886.491 kb on + strand, within AO356_03975at 886.492 kb on - strand, within AO356_03975at 886.533 kb on + strand, within AO356_03975at 886.534 kb on - strand, within AO356_03975at 886.534 kb on - strand, within AO356_03975at 886.548 kb on + strand, within AO356_03975at 886.602 kb on + strand, within AO356_03975at 886.602 kb on + strand, within AO356_03975at 886.603 kb on - strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.641 kb on + strand, within AO356_03975at 886.642 kb on - strand, within AO356_03975at 886.865 kb on + strandat 886.865 kb on + strandat 886.932 kb on + strandat 886.933 kb on - strandat 886.933 kb on - strandat 887.308 kb on - strandat 887.308 kb on - strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.417 kb on + strandat 887.418 kb on - strandat 887.418 kb on - strandat 887.504 kb on + strand, within AO356_03985at 887.504 kb on + strand, within AO356_03985at 887.504 kb on + strand, within AO356_03985at 887.504 kb on + strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.505 kb on - strand, within AO356_03985at 887.508 kb on + strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.509 kb on - strand, within AO356_03985at 887.679 kb on + strand, within AO356_03985at 887.680 kb on - strand, within AO356_03985at 887.756 kb on + strand, within AO356_03985at 887.756 kb on + strand, within AO356_03985at 887.757 kb on - strand, within AO356_03985at 887.770 kb on + strand, within AO356_03985at 887.770 kb on + strand, within AO356_03985at 887.835 kb on + strand, within AO356_03985at 887.835 kb on + strand, within AO356_03985at 887.836 kb on - strand, within AO356_03985at 887.836 kb on - strand, within AO356_03985at 887.836 kb on - strand, within AO356_03985

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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885,135 + AO356_03970 0.63 +0.3
885,137 + AO356_03970 0.63 +0.4
885,137 + AO356_03970 0.63 +0.9
885,137 + AO356_03970 0.63 -0.7
885,137 + AO356_03970 0.63 +0.3
885,137 + AO356_03970 0.63 -0.0
885,137 + AO356_03970 0.63 -0.1
885,137 + AO356_03970 0.63 -1.1
885,137 + AO356_03970 0.63 -0.1
885,138 - AO356_03970 0.63 +1.2
885,138 - AO356_03970 0.63 +0.2
885,138 - AO356_03970 0.63 +0.5
885,502 + AO356_03970 0.86 -0.2
885,502 + AO356_03970 0.86 -0.7
885,503 - AO356_03970 0.86 -0.0
885,593 + -0.8
885,593 + +1.0
885,593 + -0.0
885,594 - +0.3
885,594 - +0.0
885,594 - +0.8
885,648 - +0.9
885,840 - +0.3
885,852 + -0.2
885,904 + -0.2
885,904 + -2.5
885,905 - +0.3
885,905 - -0.3
885,905 - +0.2
885,906 + +0.6
885,906 + +0.1
885,906 + -0.3
885,919 - +0.7
885,925 - -0.0
885,972 + +0.4
885,997 + -0.1
886,003 + -0.5
886,004 - +0.2
886,004 - +0.5
886,020 + -0.0
886,021 - +0.7
886,083 + +0.4
886,083 + +0.9
886,084 - +0.4
886,084 - +0.5
886,122 + +0.6
886,122 + +1.2
886,122 + +1.3
886,123 - +0.8
886,123 - +1.3
886,203 + AO356_03975 0.17 +1.2
886,203 + AO356_03975 0.17 +0.2
886,204 - AO356_03975 0.17 +1.2
886,204 - AO356_03975 0.17 +0.4
886,204 - AO356_03975 0.17 +0.7
886,379 + AO356_03975 0.40 +0.6
886,379 + AO356_03975 0.40 -0.3
886,379 + AO356_03975 0.40 +1.0
886,380 - AO356_03975 0.40 -0.3
886,404 + AO356_03975 0.43 +0.9
886,491 + AO356_03975 0.54 +0.3
886,492 - AO356_03975 0.54 -0.1
886,533 + AO356_03975 0.59 +1.8
886,534 - AO356_03975 0.59 +0.4
886,534 - AO356_03975 0.59 +1.2
886,548 + AO356_03975 0.61 +1.0
886,602 + AO356_03975 0.68 +0.0
886,602 + AO356_03975 0.68 +0.4
886,603 - AO356_03975 0.68 -0.5
886,641 + AO356_03975 0.73 +1.7
886,641 + AO356_03975 0.73 +1.3
886,641 + AO356_03975 0.73 +0.1
886,641 + AO356_03975 0.73 +1.1
886,641 + AO356_03975 0.73 +0.2
886,642 - AO356_03975 0.73 +1.8
886,865 + +0.2
886,865 + +0.0
886,932 + -0.0
886,933 - +0.3
886,933 - -0.0
887,308 - -0.7
887,308 - -0.0
887,417 + +1.1
887,417 + -0.9
887,417 + -0.0
887,417 + +0.0
887,417 + +0.1
887,418 - -0.2
887,418 - -0.1
887,504 + AO356_03985 0.16 -0.2
887,504 + AO356_03985 0.16 -0.3
887,504 + AO356_03985 0.16 +0.8
887,504 + AO356_03985 0.16 -2.8
887,505 - AO356_03985 0.16 +0.4
887,505 - AO356_03985 0.16 -0.2
887,505 - AO356_03985 0.16 -0.4
887,505 - AO356_03985 0.16 +1.1
887,505 - AO356_03985 0.16 +0.5
887,508 + AO356_03985 0.17 +0.5
887,509 - AO356_03985 0.17 +0.8
887,509 - AO356_03985 0.17 +0.4
887,509 - AO356_03985 0.17 +0.6
887,509 - AO356_03985 0.17 -0.5
887,509 - AO356_03985 0.17 -0.0
887,679 + AO356_03985 0.31 +1.6
887,680 - AO356_03985 0.31 +0.6
887,756 + AO356_03985 0.37 -0.7
887,756 + AO356_03985 0.37 -0.2
887,757 - AO356_03985 0.38 +0.4
887,770 + AO356_03985 0.39 +2.6
887,770 + AO356_03985 0.39 +0.5
887,835 + AO356_03985 0.44 +0.7
887,835 + AO356_03985 0.44 -0.0
887,836 - AO356_03985 0.44 -0.1
887,836 - AO356_03985 0.44 +0.7
887,836 - AO356_03985 0.44 -0.6

Or see this region's nucleotide sequence