Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03810

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03805 and AO356_03810 are separated by 5 nucleotidesAO356_03810 and AO356_03815 are separated by 102 nucleotidesAO356_03815 and AO356_03820 are separated by 6 nucleotides AO356_03805: AO356_03805 - chemotaxis protein CheY, at 842,549 to 844,255 _03805 AO356_03810: AO356_03810 - anti-anti-sigma factor, at 844,261 to 844,566 _03810 AO356_03815: AO356_03815 - flagellar biogenesis protein, at 844,669 to 845,118 _03815 AO356_03820: AO356_03820 - flagellar protein export ATPase FliI, at 845,125 to 846,483 _03820 Position (kb) 844 845Strain fitness (log2 ratio) -2 -1 0 1 2at 843.269 kb on + strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.269 kb on + strand, within AO356_03805at 843.270 kb on - strand, within AO356_03805at 843.270 kb on - strand, within AO356_03805at 843.272 kb on + strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.273 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.392 kb on - strand, within AO356_03805at 843.421 kb on - strand, within AO356_03805at 843.586 kb on - strand, within AO356_03805at 843.717 kb on + strand, within AO356_03805at 843.717 kb on + strand, within AO356_03805at 843.718 kb on - strand, within AO356_03805at 843.718 kb on - strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.816 kb on + strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.817 kb on - strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.921 kb on + strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 843.922 kb on - strand, within AO356_03805at 844.116 kb on + strandat 844.116 kb on + strandat 844.117 kb on - strandat 844.117 kb on - strandat 844.117 kb on - strandat 844.409 kb on + strand, within AO356_03810at 844.410 kb on - strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.466 kb on + strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.467 kb on - strand, within AO356_03810at 844.547 kb on - strandat 844.547 kb on - strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.590 kb on + strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.591 kb on - strandat 844.596 kb on + strandat 844.596 kb on + strandat 844.597 kb on - strandat 844.597 kb on - strandat 844.605 kb on + strandat 844.605 kb on + strandat 844.605 kb on + strandat 844.640 kb on - strandat 844.640 kb on - strandat 844.647 kb on - strandat 844.673 kb on + strandat 844.674 kb on - strandat 844.758 kb on + strand, within AO356_03815at 844.759 kb on - strand, within AO356_03815at 844.760 kb on + strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.761 kb on - strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.967 kb on + strand, within AO356_03815at 844.968 kb on - strand, within AO356_03815at 845.033 kb on + strand, within AO356_03815at 845.033 kb on + strand, within AO356_03815at 845.034 kb on - strand, within AO356_03815at 845.034 kb on - strand, within AO356_03815at 845.126 kb on + strandat 845.126 kb on + strandat 845.126 kb on + strandat 845.126 kb on + strandat 845.213 kb on + strandat 845.214 kb on - strandat 845.276 kb on + strand, within AO356_03820at 845.276 kb on + strand, within AO356_03820at 845.276 kb on + strand, within AO356_03820at 845.276 kb on + strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.277 kb on - strand, within AO356_03820at 845.325 kb on - strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.528 kb on + strand, within AO356_03820at 845.529 kb on - strand, within AO356_03820at 845.529 kb on - strand, within AO356_03820at 845.529 kb on - strand, within AO356_03820

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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843,269 + AO356_03805 0.42 +1.4
843,269 + AO356_03805 0.42 -0.6
843,269 + AO356_03805 0.42 +1.4
843,270 - AO356_03805 0.42 +0.6
843,270 - AO356_03805 0.42 +1.1
843,272 + AO356_03805 0.42 -0.7
843,273 - AO356_03805 0.42 +1.2
843,273 - AO356_03805 0.42 -0.1
843,273 - AO356_03805 0.42 +0.0
843,392 - AO356_03805 0.49 +1.5
843,392 - AO356_03805 0.49 -1.4
843,392 - AO356_03805 0.49 +0.1
843,421 - AO356_03805 0.51 +0.5
843,586 - AO356_03805 0.61 -0.1
843,717 + AO356_03805 0.68 +0.2
843,717 + AO356_03805 0.68 +0.8
843,718 - AO356_03805 0.68 -1.1
843,718 - AO356_03805 0.68 +1.3
843,816 + AO356_03805 0.74 +0.5
843,816 + AO356_03805 0.74 +0.6
843,816 + AO356_03805 0.74 +1.1
843,816 + AO356_03805 0.74 +0.2
843,816 + AO356_03805 0.74 +0.0
843,817 - AO356_03805 0.74 -0.4
843,817 - AO356_03805 0.74 +0.8
843,817 - AO356_03805 0.74 -0.4
843,817 - AO356_03805 0.74 +1.5
843,817 - AO356_03805 0.74 -0.1
843,921 + AO356_03805 0.80 -0.1
843,921 + AO356_03805 0.80 -0.4
843,921 + AO356_03805 0.80 +0.8
843,921 + AO356_03805 0.80 +0.2
843,922 - AO356_03805 0.80 -0.7
843,922 - AO356_03805 0.80 +0.6
843,922 - AO356_03805 0.80 +0.9
843,922 - AO356_03805 0.80 -0.1
843,922 - AO356_03805 0.80 -0.3
844,116 + +0.7
844,116 + +0.6
844,117 - -0.2
844,117 - +0.1
844,117 - +0.1
844,409 + AO356_03810 0.48 +0.6
844,410 - AO356_03810 0.49 -0.6
844,466 + AO356_03810 0.67 -1.2
844,466 + AO356_03810 0.67 -1.6
844,466 + AO356_03810 0.67 -0.6
844,466 + AO356_03810 0.67 -1.8
844,466 + AO356_03810 0.67 -0.3
844,467 - AO356_03810 0.67 -1.0
844,467 - AO356_03810 0.67 -1.0
844,467 - AO356_03810 0.67 -1.1
844,467 - AO356_03810 0.67 +0.1
844,547 - +0.8
844,547 - -0.5
844,590 + -0.9
844,590 + +0.2
844,590 + -0.8
844,590 + -0.4
844,590 + -0.9
844,590 + -0.6
844,591 - -0.5
844,591 - -1.2
844,591 - -0.2
844,591 - -1.4
844,591 - -2.0
844,591 - -0.3
844,591 - -0.9
844,591 - +0.6
844,591 - -0.8
844,591 - -1.0
844,591 - -0.3
844,591 - +0.3
844,596 + -0.3
844,596 + -0.2
844,597 - -1.8
844,597 - +1.6
844,605 + +0.1
844,605 + -0.5
844,605 + +1.2
844,640 - +0.1
844,640 - +0.7
844,647 - +0.2
844,673 + +0.2
844,674 - +0.8
844,758 + AO356_03815 0.20 +0.7
844,759 - AO356_03815 0.20 +1.3
844,760 + AO356_03815 0.20 +0.2
844,761 - AO356_03815 0.20 +0.6
844,761 - AO356_03815 0.20 -0.1
844,761 - AO356_03815 0.20 +0.8
844,761 - AO356_03815 0.20 +0.3
844,967 + AO356_03815 0.66 -0.2
844,967 + AO356_03815 0.66 +0.0
844,967 + AO356_03815 0.66 -0.5
844,968 - AO356_03815 0.66 -0.0
845,033 + AO356_03815 0.81 +0.4
845,033 + AO356_03815 0.81 +0.6
845,034 - AO356_03815 0.81 -0.2
845,034 - AO356_03815 0.81 +0.1
845,126 + +0.7
845,126 + +0.2
845,126 + +0.2
845,126 + +0.5
845,213 + +0.4
845,214 - +1.1
845,276 + AO356_03820 0.11 +0.3
845,276 + AO356_03820 0.11 +0.5
845,276 + AO356_03820 0.11 +1.2
845,276 + AO356_03820 0.11 +0.4
845,277 - AO356_03820 0.11 +0.0
845,277 - AO356_03820 0.11 -0.8
845,277 - AO356_03820 0.11 +0.4
845,277 - AO356_03820 0.11 +0.7
845,277 - AO356_03820 0.11 +0.8
845,277 - AO356_03820 0.11 +0.4
845,277 - AO356_03820 0.11 -0.5
845,277 - AO356_03820 0.11 +2.2
845,277 - AO356_03820 0.11 +0.3
845,277 - AO356_03820 0.11 +0.1
845,277 - AO356_03820 0.11 +0.6
845,277 - AO356_03820 0.11 +0.3
845,325 - AO356_03820 0.15 +0.2
845,528 + AO356_03820 0.30 -0.0
845,528 + AO356_03820 0.30 +1.0
845,528 + AO356_03820 0.30 -0.3
845,528 + AO356_03820 0.30 +0.6
845,528 + AO356_03820 0.30 -0.1
845,529 - AO356_03820 0.30 -0.2
845,529 - AO356_03820 0.30 +0.0
845,529 - AO356_03820 0.30 +0.0

Or see this region's nucleotide sequence