Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03745

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03740 and AO356_03745 are separated by 11 nucleotidesAO356_03745 and AO356_03750 are separated by 135 nucleotidesAO356_03750 and AO356_03755 are separated by 127 nucleotides AO356_03740: AO356_03740 - flagellar biosynthesis protein FlhF, at 830,624 to 831,973 _03740 AO356_03745: AO356_03745 - flagellar biosynthesis protein FlhA, at 831,985 to 834,114 _03745 AO356_03750: AO356_03750 - hypothetical protein, at 834,250 to 834,933 _03750 AO356_03755: AO356_03755 - flagellar biosynthetic protein FlhB, at 835,061 to 836,197 _03755 Position (kb) 831 832 833 834 835Strain fitness (log2 ratio) -2 -1 0 1 2at 831.042 kb on - strand, within AO356_03740at 831.042 kb on - strand, within AO356_03740at 831.213 kb on - strand, within AO356_03740at 831.213 kb on - strand, within AO356_03740at 831.213 kb on - strand, within AO356_03740at 831.213 kb on - strand, within AO356_03740at 831.213 kb on - strand, within AO356_03740at 831.213 kb on - strand, within AO356_03740at 831.217 kb on - strand, within AO356_03740at 831.982 kb on - strandat 832.262 kb on - strand, within AO356_03745at 832.315 kb on + strand, within AO356_03745at 832.315 kb on + strand, within AO356_03745at 832.316 kb on - strand, within AO356_03745at 832.316 kb on - strand, within AO356_03745at 832.316 kb on - strand, within AO356_03745at 832.316 kb on - strand, within AO356_03745at 832.316 kb on - strand, within AO356_03745at 832.316 kb on - strand, within AO356_03745at 832.378 kb on - strand, within AO356_03745at 832.426 kb on + strand, within AO356_03745at 832.426 kb on + strand, within AO356_03745at 832.426 kb on + strand, within AO356_03745at 832.426 kb on + strand, within AO356_03745at 832.426 kb on + strand, within AO356_03745at 832.426 kb on + strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.427 kb on - strand, within AO356_03745at 832.598 kb on + strand, within AO356_03745at 832.598 kb on + strand, within AO356_03745at 832.598 kb on + strand, within AO356_03745at 832.598 kb on + strand, within AO356_03745at 832.599 kb on - strand, within AO356_03745at 832.599 kb on - strand, within AO356_03745at 832.599 kb on - strand, within AO356_03745at 832.632 kb on + strand, within AO356_03745at 832.650 kb on + strand, within AO356_03745at 832.650 kb on + strand, within AO356_03745at 832.650 kb on + strand, within AO356_03745at 832.651 kb on - strand, within AO356_03745at 832.651 kb on - strand, within AO356_03745at 832.751 kb on + strand, within AO356_03745at 832.752 kb on - strand, within AO356_03745at 832.790 kb on + strand, within AO356_03745at 832.790 kb on + strand, within AO356_03745at 832.873 kb on + strand, within AO356_03745at 832.873 kb on + strand, within AO356_03745at 832.874 kb on - strand, within AO356_03745at 832.874 kb on - strand, within AO356_03745at 833.141 kb on + strand, within AO356_03745at 833.141 kb on + strand, within AO356_03745at 833.141 kb on + strand, within AO356_03745at 833.141 kb on + strand, within AO356_03745at 833.141 kb on + strand, within AO356_03745at 833.141 kb on + strand, within AO356_03745at 833.141 kb on + strand, within AO356_03745at 833.142 kb on - strand, within AO356_03745at 833.142 kb on - strand, within AO356_03745at 833.142 kb on - strand, within AO356_03745at 833.391 kb on - strand, within AO356_03745at 833.391 kb on - strand, within AO356_03745at 833.531 kb on + strand, within AO356_03745at 833.531 kb on + strand, within AO356_03745at 833.531 kb on + strand, within AO356_03745at 833.531 kb on + strand, within AO356_03745at 833.532 kb on - strand, within AO356_03745at 833.532 kb on - strand, within AO356_03745at 833.532 kb on - strand, within AO356_03745at 833.532 kb on - strand, within AO356_03745at 833.532 kb on - strand, within AO356_03745at 833.532 kb on - strand, within AO356_03745at 833.747 kb on + strand, within AO356_03745at 833.747 kb on + strand, within AO356_03745at 833.747 kb on + strand, within AO356_03745at 833.747 kb on + strand, within AO356_03745at 833.747 kb on + strand, within AO356_03745at 833.747 kb on + strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.748 kb on - strand, within AO356_03745at 833.932 kb on + strandat 833.933 kb on - strandat 833.933 kb on - strandat 834.070 kb on + strandat 834.070 kb on + strandat 834.070 kb on + strandat 834.071 kb on - strandat 834.071 kb on - strandat 834.097 kb on + strandat 834.097 kb on + strandat 834.097 kb on + strandat 834.098 kb on - strandat 834.098 kb on - strandat 834.174 kb on - strandat 834.265 kb on + strandat 834.265 kb on + strandat 834.266 kb on - strandat 834.266 kb on - strandat 834.314 kb on + strandat 834.314 kb on + strandat 834.314 kb on + strandat 834.314 kb on + strandat 834.314 kb on + strandat 834.314 kb on + strandat 834.315 kb on - strandat 834.315 kb on - strandat 834.315 kb on - strandat 834.315 kb on - strandat 834.329 kb on + strand, within AO356_03750at 834.329 kb on + strand, within AO356_03750at 834.330 kb on - strand, within AO356_03750at 834.371 kb on + strand, within AO356_03750at 834.371 kb on + strand, within AO356_03750at 834.372 kb on - strand, within AO356_03750at 834.372 kb on - strand, within AO356_03750at 834.433 kb on + strand, within AO356_03750at 834.434 kb on - strand, within AO356_03750at 834.555 kb on + strand, within AO356_03750at 834.555 kb on + strand, within AO356_03750at 834.626 kb on + strand, within AO356_03750at 834.626 kb on + strand, within AO356_03750at 834.627 kb on - strand, within AO356_03750at 834.627 kb on - strand, within AO356_03750at 834.627 kb on - strand, within AO356_03750at 834.627 kb on - strand, within AO356_03750at 834.648 kb on + strand, within AO356_03750at 834.698 kb on + strand, within AO356_03750at 834.698 kb on + strand, within AO356_03750at 834.698 kb on + strand, within AO356_03750at 834.698 kb on + strand, within AO356_03750at 834.698 kb on + strand, within AO356_03750at 834.699 kb on - strand, within AO356_03750at 834.704 kb on + strand, within AO356_03750at 834.705 kb on - strand, within AO356_03750at 834.705 kb on - strand, within AO356_03750at 834.705 kb on - strand, within AO356_03750at 834.705 kb on - strand, within AO356_03750at 834.717 kb on - strand, within AO356_03750at 834.768 kb on - strand, within AO356_03750at 834.768 kb on - strand, within AO356_03750at 834.768 kb on - strand, within AO356_03750at 834.779 kb on + strand, within AO356_03750at 834.779 kb on + strand, within AO356_03750at 834.779 kb on + strand, within AO356_03750at 834.779 kb on + strand, within AO356_03750at 834.779 kb on + strand, within AO356_03750at 834.779 kb on + strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.780 kb on - strand, within AO356_03750at 834.917 kb on + strandat 834.918 kb on - strandat 834.938 kb on + strandat 834.939 kb on - strandat 834.970 kb on + strandat 834.970 kb on + strandat 834.970 kb on + strandat 834.970 kb on + strandat 834.970 kb on + strandat 834.970 kb on + strandat 834.970 kb on + strandat 834.970 kb on + strandat 834.971 kb on - strandat 834.971 kb on - strandat 834.971 kb on - strandat 834.971 kb on - strandat 834.971 kb on - strandat 834.971 kb on - strandat 834.971 kb on - strandat 834.971 kb on - strandat 834.996 kb on - strandat 834.996 kb on - strandat 835.014 kb on + strandat 835.015 kb on - strandat 835.015 kb on - strandat 835.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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831,042 - AO356_03740 0.31 -0.4
831,042 - AO356_03740 0.31 -0.6
831,213 - AO356_03740 0.44 +0.7
831,213 - AO356_03740 0.44 +0.5
831,213 - AO356_03740 0.44 +0.2
831,213 - AO356_03740 0.44 -0.2
831,213 - AO356_03740 0.44 +0.2
831,213 - AO356_03740 0.44 +1.6
831,217 - AO356_03740 0.44 +2.1
831,982 - -0.5
832,262 - AO356_03745 0.13 +0.1
832,315 + AO356_03745 0.15 +0.5
832,315 + AO356_03745 0.15 +1.1
832,316 - AO356_03745 0.16 -0.8
832,316 - AO356_03745 0.16 +0.7
832,316 - AO356_03745 0.16 -0.1
832,316 - AO356_03745 0.16 +0.8
832,316 - AO356_03745 0.16 -0.6
832,316 - AO356_03745 0.16 +0.5
832,378 - AO356_03745 0.18 -0.2
832,426 + AO356_03745 0.21 -0.2
832,426 + AO356_03745 0.21 +0.6
832,426 + AO356_03745 0.21 +0.1
832,426 + AO356_03745 0.21 +0.3
832,426 + AO356_03745 0.21 +1.0
832,426 + AO356_03745 0.21 +0.9
832,427 - AO356_03745 0.21 +0.0
832,427 - AO356_03745 0.21 +0.2
832,427 - AO356_03745 0.21 +0.4
832,427 - AO356_03745 0.21 +0.6
832,427 - AO356_03745 0.21 +0.4
832,427 - AO356_03745 0.21 +0.2
832,427 - AO356_03745 0.21 -1.0
832,427 - AO356_03745 0.21 +0.4
832,598 + AO356_03745 0.29 +0.6
832,598 + AO356_03745 0.29 +0.2
832,598 + AO356_03745 0.29 +0.4
832,598 + AO356_03745 0.29 +0.4
832,599 - AO356_03745 0.29 -0.2
832,599 - AO356_03745 0.29 -0.4
832,599 - AO356_03745 0.29 -0.5
832,632 + AO356_03745 0.30 +1.2
832,650 + AO356_03745 0.31 +0.0
832,650 + AO356_03745 0.31 +0.8
832,650 + AO356_03745 0.31 -0.8
832,651 - AO356_03745 0.31 +0.2
832,651 - AO356_03745 0.31 -0.8
832,751 + AO356_03745 0.36 +0.9
832,752 - AO356_03745 0.36 +0.5
832,790 + AO356_03745 0.38 +0.8
832,790 + AO356_03745 0.38 -0.8
832,873 + AO356_03745 0.42 +1.4
832,873 + AO356_03745 0.42 +0.3
832,874 - AO356_03745 0.42 +0.7
832,874 - AO356_03745 0.42 +0.9
833,141 + AO356_03745 0.54 +0.8
833,141 + AO356_03745 0.54 +1.2
833,141 + AO356_03745 0.54 +0.9
833,141 + AO356_03745 0.54 +0.7
833,141 + AO356_03745 0.54 +1.0
833,141 + AO356_03745 0.54 +1.1
833,141 + AO356_03745 0.54 +0.6
833,142 - AO356_03745 0.54 +1.4
833,142 - AO356_03745 0.54 +0.0
833,142 - AO356_03745 0.54 +0.7
833,391 - AO356_03745 0.66 +0.6
833,391 - AO356_03745 0.66 -0.0
833,531 + AO356_03745 0.73 +0.3
833,531 + AO356_03745 0.73 +0.3
833,531 + AO356_03745 0.73 +1.2
833,531 + AO356_03745 0.73 +0.6
833,532 - AO356_03745 0.73 +0.1
833,532 - AO356_03745 0.73 +0.5
833,532 - AO356_03745 0.73 +0.7
833,532 - AO356_03745 0.73 +0.2
833,532 - AO356_03745 0.73 +1.2
833,532 - AO356_03745 0.73 -0.0
833,747 + AO356_03745 0.83 -0.8
833,747 + AO356_03745 0.83 +0.4
833,747 + AO356_03745 0.83 +0.9
833,747 + AO356_03745 0.83 +1.3
833,747 + AO356_03745 0.83 +1.2
833,747 + AO356_03745 0.83 +0.4
833,748 - AO356_03745 0.83 +0.9
833,748 - AO356_03745 0.83 +0.1
833,748 - AO356_03745 0.83 +1.1
833,748 - AO356_03745 0.83 +0.2
833,748 - AO356_03745 0.83 +1.3
833,748 - AO356_03745 0.83 +0.5
833,748 - AO356_03745 0.83 +0.3
833,748 - AO356_03745 0.83 +0.6
833,932 + +0.6
833,933 - +0.7
833,933 - +2.5
834,070 + +0.9
834,070 + +0.4
834,070 + +0.1
834,071 - +0.5
834,071 - +0.3
834,097 + -0.7
834,097 + +0.4
834,097 + +1.4
834,098 - +0.6
834,098 - +0.8
834,174 - -0.9
834,265 + +0.7
834,265 + +0.3
834,266 - +0.7
834,266 - +1.4
834,314 + -0.0
834,314 + +0.3
834,314 + -0.2
834,314 + -0.1
834,314 + -0.0
834,314 + -0.3
834,315 - -0.5
834,315 - -0.1
834,315 - +0.1
834,315 - -0.8
834,329 + AO356_03750 0.12 -0.7
834,329 + AO356_03750 0.12 -1.1
834,330 - AO356_03750 0.12 -1.8
834,371 + AO356_03750 0.18 +0.8
834,371 + AO356_03750 0.18 -1.4
834,372 - AO356_03750 0.18 +1.3
834,372 - AO356_03750 0.18 +0.4
834,433 + AO356_03750 0.27 -0.7
834,434 - AO356_03750 0.27 +0.1
834,555 + AO356_03750 0.45 -2.2
834,555 + AO356_03750 0.45 -0.4
834,626 + AO356_03750 0.55 +0.9
834,626 + AO356_03750 0.55 -0.6
834,627 - AO356_03750 0.55 +0.7
834,627 - AO356_03750 0.55 +0.7
834,627 - AO356_03750 0.55 -0.4
834,627 - AO356_03750 0.55 +1.1
834,648 + AO356_03750 0.58 +0.2
834,698 + AO356_03750 0.65 +0.5
834,698 + AO356_03750 0.65 +1.2
834,698 + AO356_03750 0.65 -0.6
834,698 + AO356_03750 0.65 +0.0
834,698 + AO356_03750 0.65 -0.1
834,699 - AO356_03750 0.66 +0.1
834,704 + AO356_03750 0.66 +0.9
834,705 - AO356_03750 0.67 +0.8
834,705 - AO356_03750 0.67 -0.3
834,705 - AO356_03750 0.67 +0.5
834,705 - AO356_03750 0.67 -0.6
834,717 - AO356_03750 0.68 -1.2
834,768 - AO356_03750 0.76 -0.1
834,768 - AO356_03750 0.76 +0.8
834,768 - AO356_03750 0.76 +0.6
834,779 + AO356_03750 0.77 +0.1
834,779 + AO356_03750 0.77 +0.3
834,779 + AO356_03750 0.77 +0.6
834,779 + AO356_03750 0.77 +0.4
834,779 + AO356_03750 0.77 +1.5
834,779 + AO356_03750 0.77 -1.6
834,780 - AO356_03750 0.77 -0.7
834,780 - AO356_03750 0.77 +0.7
834,780 - AO356_03750 0.77 +0.3
834,780 - AO356_03750 0.77 +0.6
834,780 - AO356_03750 0.77 +0.1
834,780 - AO356_03750 0.77 +0.5
834,780 - AO356_03750 0.77 +0.5
834,780 - AO356_03750 0.77 -0.8
834,780 - AO356_03750 0.77 +0.9
834,780 - AO356_03750 0.77 -0.4
834,780 - AO356_03750 0.77 +0.9
834,780 - AO356_03750 0.77 -1.6
834,780 - AO356_03750 0.77 +0.2
834,917 + +0.4
834,918 - +1.0
834,938 + +0.6
834,939 - +0.1
834,970 + -0.2
834,970 + -0.8
834,970 + +0.8
834,970 + +0.4
834,970 + -0.1
834,970 + +0.2
834,970 + +0.2
834,970 + +0.9
834,971 - +0.2
834,971 - -0.7
834,971 - +0.0
834,971 - -0.8
834,971 - -1.6
834,971 - +0.1
834,971 - -0.0
834,971 - +1.1
834,996 - +0.2
834,996 - -0.4
835,014 + -0.2
835,015 - -0.1
835,015 - +0.5
835,015 - -0.3

Or see this region's nucleotide sequence