Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01875

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01860 and AO356_01865 overlap by 4 nucleotidesAO356_01865 and AO356_01870 are separated by 127 nucleotidesAO356_01870 and AO356_01875 are separated by 2 nucleotidesAO356_01875 and AO356_01880 are separated by 142 nucleotidesAO356_01880 and AO356_01885 are separated by 123 nucleotides AO356_01860: AO356_01860 - chromate transporter, at 415,634 to 416,992 _01860 AO356_01865: AO356_01865 - tyrosine protein phosphatase, at 416,989 to 417,420 _01865 AO356_01870: AO356_01870 - toxin HigB-2, at 417,548 to 417,862 _01870 AO356_01875: AO356_01875 - Cro/Cl family transcriptional regulator, at 417,865 to 418,152 _01875 AO356_01880: AO356_01880 - hypothetical protein, at 418,295 to 418,783 _01880 AO356_01885: AO356_01885 - hypothetical protein, at 418,907 to 419,104 _01885 Position (kb) 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 416.991 kb on - strandat 417.011 kb on + strandat 417.012 kb on - strandat 417.012 kb on - strandat 417.332 kb on + strand, within AO356_01865at 417.332 kb on + strand, within AO356_01865at 417.332 kb on + strand, within AO356_01865at 417.332 kb on + strand, within AO356_01865at 417.332 kb on + strand, within AO356_01865at 417.333 kb on - strand, within AO356_01865at 417.333 kb on - strand, within AO356_01865at 417.396 kb on + strandat 417.396 kb on + strandat 417.403 kb on + strandat 417.404 kb on - strandat 417.436 kb on - strandat 417.436 kb on - strandat 417.473 kb on + strandat 417.474 kb on - strandat 417.474 kb on - strandat 417.509 kb on + strandat 417.509 kb on + strandat 417.510 kb on - strandat 417.510 kb on - strandat 417.510 kb on - strandat 417.539 kb on - strandat 417.575 kb on - strandat 417.661 kb on + strand, within AO356_01870at 417.694 kb on + strand, within AO356_01870at 417.740 kb on + strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.741 kb on - strand, within AO356_01870at 417.744 kb on - strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.783 kb on + strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.784 kb on - strand, within AO356_01870at 417.785 kb on + strand, within AO356_01870at 417.786 kb on - strand, within AO356_01870at 417.860 kb on + strandat 417.860 kb on + strandat 417.860 kb on + strandat 418.078 kb on - strand, within AO356_01875at 418.150 kb on + strandat 418.260 kb on - strandat 418.260 kb on - strandat 418.260 kb on - strandat 418.272 kb on + strandat 418.404 kb on - strand, within AO356_01880at 418.404 kb on - strand, within AO356_01880at 418.514 kb on + strand, within AO356_01880at 418.515 kb on - strand, within AO356_01880at 418.520 kb on + strand, within AO356_01880at 418.521 kb on - strand, within AO356_01880at 418.521 kb on - strand, within AO356_01880at 418.521 kb on - strand, within AO356_01880at 418.521 kb on - strand, within AO356_01880at 418.621 kb on + strand, within AO356_01880at 418.622 kb on - strand, within AO356_01880at 418.622 kb on - strand, within AO356_01880at 418.685 kb on - strand, within AO356_01880at 418.726 kb on + strand, within AO356_01880at 418.726 kb on + strand, within AO356_01880at 418.727 kb on - strand, within AO356_01880at 418.761 kb on + strandat 418.762 kb on - strandat 418.779 kb on + strandat 418.779 kb on + strandat 418.779 kb on + strandat 418.779 kb on + strandat 418.780 kb on - strandat 418.780 kb on - strandat 418.780 kb on - strandat 418.782 kb on - strandat 418.786 kb on + strandat 418.787 kb on - strandat 418.787 kb on - strandat 418.830 kb on + strandat 418.830 kb on + strandat 418.830 kb on + strandat 418.904 kb on + strandat 418.905 kb on - strandat 418.905 kb on - strandat 418.905 kb on - strandat 419.066 kb on - strand, within AO356_01885at 419.078 kb on + strand, within AO356_01885at 419.078 kb on + strand, within AO356_01885at 419.078 kb on + strand, within AO356_01885at 419.079 kb on - strand, within AO356_01885at 419.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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416,991 - -0.6
417,011 + +0.2
417,012 - +0.3
417,012 - -0.0
417,332 + AO356_01865 0.79 -0.0
417,332 + AO356_01865 0.79 -1.7
417,332 + AO356_01865 0.79 -0.1
417,332 + AO356_01865 0.79 +0.2
417,332 + AO356_01865 0.79 +0.6
417,333 - AO356_01865 0.80 -0.2
417,333 - AO356_01865 0.80 +0.3
417,396 + +1.2
417,396 + +0.2
417,403 + +2.5
417,404 - +0.4
417,436 - +1.2
417,436 - -1.6
417,473 + +0.5
417,474 - -0.7
417,474 - +0.2
417,509 + +0.7
417,509 + -0.2
417,510 - +0.0
417,510 - +0.4
417,510 - +0.1
417,539 - -1.5
417,575 - +0.9
417,661 + AO356_01870 0.36 +0.5
417,694 + AO356_01870 0.46 +0.0
417,740 + AO356_01870 0.61 -0.4
417,741 - AO356_01870 0.61 +1.2
417,741 - AO356_01870 0.61 +0.7
417,741 - AO356_01870 0.61 -1.1
417,741 - AO356_01870 0.61 +1.1
417,741 - AO356_01870 0.61 +1.6
417,741 - AO356_01870 0.61 -0.2
417,741 - AO356_01870 0.61 +0.2
417,741 - AO356_01870 0.61 -0.9
417,741 - AO356_01870 0.61 -1.1
417,741 - AO356_01870 0.61 +0.8
417,741 - AO356_01870 0.61 -0.8
417,744 - AO356_01870 0.62 -1.8
417,783 + AO356_01870 0.75 +0.2
417,783 + AO356_01870 0.75 +0.5
417,783 + AO356_01870 0.75 +0.0
417,783 + AO356_01870 0.75 +0.3
417,783 + AO356_01870 0.75 -0.8
417,783 + AO356_01870 0.75 +2.0
417,783 + AO356_01870 0.75 +0.0
417,783 + AO356_01870 0.75 -0.1
417,783 + AO356_01870 0.75 -0.8
417,783 + AO356_01870 0.75 +0.0
417,784 - AO356_01870 0.75 +0.3
417,784 - AO356_01870 0.75 -0.2
417,784 - AO356_01870 0.75 +0.3
417,784 - AO356_01870 0.75 +0.3
417,784 - AO356_01870 0.75 +0.1
417,784 - AO356_01870 0.75 +0.5
417,784 - AO356_01870 0.75 +0.0
417,784 - AO356_01870 0.75 +0.2
417,784 - AO356_01870 0.75 +0.4
417,785 + AO356_01870 0.75 -0.5
417,786 - AO356_01870 0.76 -0.4
417,860 + -0.1
417,860 + -0.4
417,860 + +2.0
418,078 - AO356_01875 0.74 -0.7
418,150 + -0.6
418,260 - -0.6
418,260 - +1.4
418,260 - +0.2
418,272 + +0.5
418,404 - AO356_01880 0.22 -0.4
418,404 - AO356_01880 0.22 +0.0
418,514 + AO356_01880 0.45 +0.6
418,515 - AO356_01880 0.45 +1.3
418,520 + AO356_01880 0.46 -0.1
418,521 - AO356_01880 0.46 +0.5
418,521 - AO356_01880 0.46 +0.0
418,521 - AO356_01880 0.46 -0.1
418,521 - AO356_01880 0.46 +0.1
418,621 + AO356_01880 0.67 -0.8
418,622 - AO356_01880 0.67 -1.5
418,622 - AO356_01880 0.67 +0.4
418,685 - AO356_01880 0.80 +1.3
418,726 + AO356_01880 0.88 +0.4
418,726 + AO356_01880 0.88 -0.4
418,727 - AO356_01880 0.88 +0.8
418,761 + +0.7
418,762 - -0.7
418,779 + +0.4
418,779 + -0.1
418,779 + -0.3
418,779 + +0.5
418,780 - -0.1
418,780 - -0.2
418,780 - +0.4
418,782 - +0.6
418,786 + -0.7
418,787 - -0.3
418,787 - +0.0
418,830 + +0.8
418,830 + -0.4
418,830 + +0.4
418,904 + -0.7
418,905 - +1.0
418,905 - +0.6
418,905 - -0.2
419,066 - AO356_01885 0.80 -0.2
419,078 + AO356_01885 0.86 +1.2
419,078 + AO356_01885 0.86 +0.3
419,078 + AO356_01885 0.86 -0.4
419,079 - AO356_01885 0.87 -1.0
419,140 + -0.1

Or see this region's nucleotide sequence