Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01640

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_01635 and AO356_01640 are separated by 247 nucleotidesAO356_01640 and AO356_01645 overlap by 4 nucleotidesAO356_01645 and AO356_01650 are separated by 6 nucleotides AO356_01635: AO356_01635 - IclR family transcriptional regulator, at 368,301 to 369,137 _01635 AO356_01640: AO356_01640 - Fe3+/spermidine/putrescine ABC transporter ATP-binding protein, at 369,385 to 370,410 _01640 AO356_01645: AO356_01645 - ABC transporter permease, at 370,407 to 371,276 _01645 AO356_01650: AO356_01650 - ABC transporter permease, at 371,283 to 372,077 _01650 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1 2at 368.518 kb on - strand, within AO356_01635at 368.540 kb on - strand, within AO356_01635at 368.591 kb on - strand, within AO356_01635at 368.591 kb on - strand, within AO356_01635at 368.624 kb on - strand, within AO356_01635at 368.624 kb on - strand, within AO356_01635at 368.832 kb on + strand, within AO356_01635at 369.182 kb on + strandat 369.203 kb on - strandat 369.233 kb on + strandat 369.320 kb on + strandat 369.320 kb on + strandat 369.331 kb on - strandat 369.361 kb on - strandat 369.361 kb on - strandat 369.586 kb on - strand, within AO356_01640at 369.905 kb on - strand, within AO356_01640at 369.905 kb on - strand, within AO356_01640at 369.905 kb on - strand, within AO356_01640at 369.905 kb on - strand, within AO356_01640at 370.039 kb on + strand, within AO356_01640at 370.040 kb on - strand, within AO356_01640at 370.446 kb on + strandat 370.476 kb on + strandat 370.476 kb on + strandat 370.539 kb on + strand, within AO356_01645at 370.539 kb on + strand, within AO356_01645at 370.539 kb on + strand, within AO356_01645at 370.566 kb on + strand, within AO356_01645at 370.567 kb on - strand, within AO356_01645at 370.567 kb on - strand, within AO356_01645at 370.567 kb on - strand, within AO356_01645at 370.569 kb on - strand, within AO356_01645at 370.569 kb on - strand, within AO356_01645at 370.581 kb on + strand, within AO356_01645at 370.582 kb on - strand, within AO356_01645at 370.605 kb on + strand, within AO356_01645at 370.605 kb on + strand, within AO356_01645at 370.606 kb on - strand, within AO356_01645at 370.606 kb on - strand, within AO356_01645at 370.611 kb on + strand, within AO356_01645at 370.612 kb on - strand, within AO356_01645at 370.689 kb on + strand, within AO356_01645at 370.689 kb on + strand, within AO356_01645at 370.689 kb on + strand, within AO356_01645at 370.689 kb on + strand, within AO356_01645at 370.689 kb on + strand, within AO356_01645at 370.689 kb on + strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.690 kb on - strand, within AO356_01645at 370.863 kb on + strand, within AO356_01645at 370.863 kb on + strand, within AO356_01645at 370.863 kb on + strand, within AO356_01645at 370.864 kb on - strand, within AO356_01645at 370.864 kb on - strand, within AO356_01645at 370.864 kb on - strand, within AO356_01645at 370.864 kb on - strand, within AO356_01645at 370.865 kb on + strand, within AO356_01645at 370.865 kb on + strand, within AO356_01645at 370.865 kb on + strand, within AO356_01645at 370.865 kb on + strand, within AO356_01645at 370.865 kb on + strand, within AO356_01645at 370.865 kb on + strand, within AO356_01645at 370.866 kb on - strand, within AO356_01645at 370.866 kb on - strand, within AO356_01645at 371.015 kb on - strand, within AO356_01645at 371.015 kb on - strand, within AO356_01645at 371.151 kb on + strand, within AO356_01645at 371.151 kb on + strand, within AO356_01645at 371.256 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
368,518 - AO356_01635 0.26 +0.3
368,540 - AO356_01635 0.29 -0.8
368,591 - AO356_01635 0.35 -0.5
368,591 - AO356_01635 0.35 +0.2
368,624 - AO356_01635 0.39 +0.7
368,624 - AO356_01635 0.39 -0.4
368,832 + AO356_01635 0.63 +1.3
369,182 + -0.5
369,203 - -0.9
369,233 + +0.6
369,320 + -0.6
369,320 + -0.8
369,331 - +0.7
369,361 - -0.0
369,361 - +0.2
369,586 - AO356_01640 0.20 +1.6
369,905 - AO356_01640 0.51 -0.2
369,905 - AO356_01640 0.51 -0.1
369,905 - AO356_01640 0.51 +0.5
369,905 - AO356_01640 0.51 +1.4
370,039 + AO356_01640 0.64 +0.2
370,040 - AO356_01640 0.64 +0.2
370,446 + -0.1
370,476 + -0.2
370,476 + -1.1
370,539 + AO356_01645 0.15 -0.4
370,539 + AO356_01645 0.15 +0.3
370,539 + AO356_01645 0.15 +0.3
370,566 + AO356_01645 0.18 +0.4
370,567 - AO356_01645 0.18 -0.5
370,567 - AO356_01645 0.18 +0.7
370,567 - AO356_01645 0.18 -0.5
370,569 - AO356_01645 0.19 +0.4
370,569 - AO356_01645 0.19 -0.3
370,581 + AO356_01645 0.20 -0.5
370,582 - AO356_01645 0.20 -0.4
370,605 + AO356_01645 0.23 +0.7
370,605 + AO356_01645 0.23 -1.0
370,606 - AO356_01645 0.23 +0.7
370,606 - AO356_01645 0.23 +0.6
370,611 + AO356_01645 0.23 +1.4
370,612 - AO356_01645 0.24 -0.3
370,689 + AO356_01645 0.32 +0.2
370,689 + AO356_01645 0.32 -0.3
370,689 + AO356_01645 0.32 -0.1
370,689 + AO356_01645 0.32 +0.3
370,689 + AO356_01645 0.32 -1.0
370,689 + AO356_01645 0.32 -0.4
370,690 - AO356_01645 0.33 +0.2
370,690 - AO356_01645 0.33 -1.1
370,690 - AO356_01645 0.33 +1.0
370,690 - AO356_01645 0.33 +0.3
370,690 - AO356_01645 0.33 -0.1
370,690 - AO356_01645 0.33 +1.6
370,690 - AO356_01645 0.33 -0.9
370,690 - AO356_01645 0.33 +1.3
370,863 + AO356_01645 0.52 +1.5
370,863 + AO356_01645 0.52 -0.7
370,863 + AO356_01645 0.52 +0.6
370,864 - AO356_01645 0.53 -0.7
370,864 - AO356_01645 0.53 -0.2
370,864 - AO356_01645 0.53 -0.7
370,864 - AO356_01645 0.53 +0.2
370,865 + AO356_01645 0.53 -2.5
370,865 + AO356_01645 0.53 +1.8
370,865 + AO356_01645 0.53 +0.7
370,865 + AO356_01645 0.53 -0.1
370,865 + AO356_01645 0.53 +0.0
370,865 + AO356_01645 0.53 +0.5
370,866 - AO356_01645 0.53 -2.3
370,866 - AO356_01645 0.53 -0.1
371,015 - AO356_01645 0.70 -0.4
371,015 - AO356_01645 0.70 -1.2
371,151 + AO356_01645 0.86 +0.3
371,151 + AO356_01645 0.86 +0.4
371,256 + -0.1

Or see this region's nucleotide sequence