Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00575

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00565 and AO356_00570 are separated by 226 nucleotidesAO356_00570 and AO356_00575 are separated by 51 nucleotidesAO356_00575 and AO356_00580 are separated by 216 nucleotides AO356_00565: AO356_00565 - peptidase, at 122,226 to 123,257 _00565 AO356_00570: AO356_00570 - phosphoglycerate mutase, at 123,484 to 124,194 _00570 AO356_00575: AO356_00575 - SCP-2 family sterol carrier protein, at 124,246 to 124,560 _00575 AO356_00580: AO356_00580 - formyl transferase, at 124,777 to 126,495 _00580 Position (kb) 124 125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 123.268 kb on + strandat 123.268 kb on + strandat 123.268 kb on + strandat 123.269 kb on - strandat 123.314 kb on - strandat 123.314 kb on - strandat 123.314 kb on - strandat 123.349 kb on + strandat 123.349 kb on + strandat 123.349 kb on + strandat 123.349 kb on + strandat 123.350 kb on - strandat 123.355 kb on + strandat 123.355 kb on + strandat 123.355 kb on + strandat 123.356 kb on - strandat 123.356 kb on - strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.410 kb on - strandat 123.410 kb on - strandat 123.466 kb on + strandat 123.492 kb on + strandat 123.492 kb on + strandat 123.492 kb on + strandat 123.492 kb on + strandat 123.492 kb on + strandat 123.492 kb on + strandat 123.493 kb on - strandat 123.493 kb on - strandat 123.493 kb on - strandat 123.493 kb on - strandat 123.493 kb on - strandat 123.493 kb on - strandat 123.496 kb on + strandat 123.496 kb on + strandat 123.496 kb on + strandat 123.496 kb on + strandat 123.496 kb on + strandat 123.496 kb on + strandat 123.497 kb on - strandat 123.500 kb on + strandat 123.500 kb on + strandat 123.501 kb on - strandat 123.539 kb on - strandat 123.539 kb on - strandat 123.611 kb on + strand, within AO356_00570at 123.611 kb on + strand, within AO356_00570at 123.612 kb on - strand, within AO356_00570at 123.654 kb on + strand, within AO356_00570at 123.804 kb on + strand, within AO356_00570at 123.804 kb on + strand, within AO356_00570at 123.847 kb on - strand, within AO356_00570at 123.847 kb on - strand, within AO356_00570at 123.847 kb on - strand, within AO356_00570at 123.886 kb on + strand, within AO356_00570at 123.886 kb on + strand, within AO356_00570at 123.887 kb on - strand, within AO356_00570at 123.887 kb on - strand, within AO356_00570at 124.204 kb on - strandat 124.208 kb on + strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.221 kb on + strandat 124.232 kb on + strandat 124.232 kb on + strandat 124.233 kb on - strandat 124.233 kb on - strandat 124.233 kb on - strandat 124.268 kb on + strandat 124.268 kb on + strandat 124.269 kb on - strandat 124.323 kb on - strand, within AO356_00575at 124.323 kb on - strand, within AO356_00575at 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 125.182 kb on + strand, within AO356_00580at 125.182 kb on + strand, within AO356_00580at 125.182 kb on + strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.184 kb on + strand, within AO356_00580at 125.185 kb on - strand, within AO356_00580at 125.239 kb on + strand, within AO356_00580at 125.273 kb on - strand, within AO356_00580at 125.428 kb on + strand, within AO356_00580at 125.429 kb on - strand, within AO356_00580at 125.434 kb on + strand, within AO356_00580at 125.434 kb on + strand, within AO356_00580at 125.435 kb on - strand, within AO356_00580at 125.477 kb on + strand, within AO356_00580at 125.477 kb on + strand, within AO356_00580

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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123,268 + -0.3
123,268 + +0.4
123,268 + +1.0
123,269 - -0.7
123,314 - +0.8
123,314 - +0.0
123,314 - -0.1
123,349 + -0.2
123,349 + +0.3
123,349 + +0.1
123,349 + -0.3
123,350 - +1.1
123,355 + -0.4
123,355 + -1.2
123,355 + -0.1
123,356 - -0.7
123,356 - -0.4
123,409 + -1.4
123,409 + +0.8
123,410 - -0.7
123,410 - -0.8
123,466 + -0.7
123,492 + +0.5
123,492 + -0.3
123,492 + -1.4
123,492 + -1.5
123,492 + -0.1
123,492 + +0.2
123,493 - -0.1
123,493 - -0.6
123,493 - -1.1
123,493 - -2.5
123,493 - -1.1
123,493 - +1.6
123,496 + +0.6
123,496 + +0.8
123,496 + -0.6
123,496 + +0.9
123,496 + -0.9
123,496 + +0.4
123,497 - +0.0
123,500 + +0.8
123,500 + -0.4
123,501 - +1.6
123,539 - -0.3
123,539 - -0.1
123,611 + AO356_00570 0.18 +0.4
123,611 + AO356_00570 0.18 +0.7
123,612 - AO356_00570 0.18 -0.1
123,654 + AO356_00570 0.24 -0.2
123,804 + AO356_00570 0.45 +0.5
123,804 + AO356_00570 0.45 +0.2
123,847 - AO356_00570 0.51 -0.9
123,847 - AO356_00570 0.51 -0.5
123,847 - AO356_00570 0.51 +0.9
123,886 + AO356_00570 0.57 -1.4
123,886 + AO356_00570 0.57 -1.5
123,887 - AO356_00570 0.57 -0.3
123,887 - AO356_00570 0.57 +0.2
124,204 - -0.8
124,208 + -0.9
124,209 - -0.5
124,209 - -0.2
124,209 - -1.7
124,209 - -0.5
124,209 - -0.1
124,221 + +0.2
124,232 + +1.8
124,232 + +0.5
124,233 - -0.9
124,233 - +0.1
124,233 - -0.0
124,268 + +0.7
124,268 + -0.8
124,269 - +0.4
124,323 - AO356_00575 0.24 -0.3
124,323 - AO356_00575 0.24 -0.6
124,707 - +0.1
124,707 - -0.0
124,707 - -0.2
125,182 + AO356_00580 0.24 -0.1
125,182 + AO356_00580 0.24 +0.6
125,182 + AO356_00580 0.24 -0.4
125,183 - AO356_00580 0.24 +0.0
125,183 - AO356_00580 0.24 +3.1
125,183 - AO356_00580 0.24 -0.3
125,183 - AO356_00580 0.24 -0.0
125,183 - AO356_00580 0.24 +0.1
125,184 + AO356_00580 0.24 +1.1
125,185 - AO356_00580 0.24 -0.9
125,239 + AO356_00580 0.27 +0.2
125,273 - AO356_00580 0.29 +0.4
125,428 + AO356_00580 0.38 +0.4
125,429 - AO356_00580 0.38 -0.0
125,434 + AO356_00580 0.38 +0.1
125,434 + AO356_00580 0.38 -0.4
125,435 - AO356_00580 0.38 +0.1
125,477 + AO356_00580 0.41 +1.6
125,477 + AO356_00580 0.41 +1.0

Or see this region's nucleotide sequence