Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00560

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00555 and AO356_00560 overlap by 17 nucleotidesAO356_00560 and AO356_00565 are separated by 244 nucleotides AO356_00555: AO356_00555 - sulfite reductase, at 119,845 to 121,503 _00555 AO356_00560: AO356_00560 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data), at 121,487 to 121,981 _00560 AO356_00565: AO356_00565 - peptidase, at 122,226 to 123,257 _00565 Position (kb) 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 120.529 kb on + strand, within AO356_00555at 120.530 kb on - strand, within AO356_00555at 120.554 kb on - strand, within AO356_00555at 120.554 kb on - strand, within AO356_00555at 120.583 kb on + strand, within AO356_00555at 120.583 kb on + strand, within AO356_00555at 120.583 kb on + strand, within AO356_00555at 120.583 kb on + strand, within AO356_00555at 120.584 kb on - strand, within AO356_00555at 120.584 kb on - strand, within AO356_00555at 120.584 kb on - strand, within AO356_00555at 120.584 kb on - strand, within AO356_00555at 120.736 kb on + strand, within AO356_00555at 120.736 kb on + strand, within AO356_00555at 120.737 kb on - strand, within AO356_00555at 120.844 kb on + strand, within AO356_00555at 120.845 kb on - strand, within AO356_00555at 121.174 kb on + strand, within AO356_00555at 121.174 kb on + strand, within AO356_00555at 121.291 kb on + strand, within AO356_00555at 121.292 kb on - strand, within AO356_00555at 121.292 kb on - strand, within AO356_00555at 121.292 kb on - strand, within AO356_00555at 121.292 kb on - strand, within AO356_00555at 121.405 kb on + strandat 121.405 kb on + strandat 121.406 kb on - strandat 121.406 kb on - strandat 121.447 kb on + strandat 121.447 kb on + strandat 121.448 kb on - strandat 121.448 kb on - strandat 121.455 kb on + strandat 121.455 kb on + strandat 121.456 kb on - strandat 121.456 kb on - strandat 121.456 kb on - strandat 121.456 kb on - strandat 121.456 kb on - strandat 121.486 kb on + strandat 121.501 kb on + strandat 121.501 kb on + strandat 121.502 kb on - strandat 121.841 kb on + strand, within AO356_00560at 121.841 kb on + strand, within AO356_00560at 121.934 kb on + strandat 121.934 kb on + strandat 122.215 kb on + strandat 122.215 kb on + strandat 122.335 kb on + strand, within AO356_00565at 122.380 kb on + strand, within AO356_00565at 122.381 kb on - strand, within AO356_00565at 122.486 kb on - strand, within AO356_00565at 122.593 kb on + strand, within AO356_00565at 122.738 kb on - strand, within AO356_00565at 122.827 kb on + strand, within AO356_00565at 122.827 kb on + strand, within AO356_00565at 122.828 kb on - strand, within AO356_00565at 122.828 kb on - strand, within AO356_00565at 122.828 kb on - strand, within AO356_00565

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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120,529 + AO356_00555 0.41 -0.2
120,530 - AO356_00555 0.41 -0.9
120,554 - AO356_00555 0.43 -0.4
120,554 - AO356_00555 0.43 -0.2
120,583 + AO356_00555 0.44 -0.1
120,583 + AO356_00555 0.44 -0.5
120,583 + AO356_00555 0.44 -0.6
120,583 + AO356_00555 0.44 -0.5
120,584 - AO356_00555 0.45 +0.2
120,584 - AO356_00555 0.45 -0.8
120,584 - AO356_00555 0.45 -1.7
120,584 - AO356_00555 0.45 +0.1
120,736 + AO356_00555 0.54 -0.5
120,736 + AO356_00555 0.54 +0.2
120,737 - AO356_00555 0.54 -2.5
120,844 + AO356_00555 0.60 +0.2
120,845 - AO356_00555 0.60 +0.5
121,174 + AO356_00555 0.80 -0.1
121,174 + AO356_00555 0.80 +0.4
121,291 + AO356_00555 0.87 -0.4
121,292 - AO356_00555 0.87 +0.7
121,292 - AO356_00555 0.87 -0.2
121,292 - AO356_00555 0.87 +0.3
121,292 - AO356_00555 0.87 -0.1
121,405 + -0.1
121,405 + +0.2
121,406 - +0.3
121,406 - -3.4
121,447 + +1.1
121,447 + +0.6
121,448 - -0.9
121,448 - -1.2
121,455 + +0.1
121,455 + -0.2
121,456 - +0.5
121,456 - -0.8
121,456 - -0.5
121,456 - +0.0
121,456 - -2.2
121,486 + -0.3
121,501 + -0.9
121,501 + -0.8
121,502 - -0.3
121,841 + AO356_00560 0.72 -0.3
121,841 + AO356_00560 0.72 -0.8
121,934 + -0.6
121,934 + +0.5
122,215 + +0.4
122,215 + +1.1
122,335 + AO356_00565 0.11 +0.0
122,380 + AO356_00565 0.15 +0.3
122,381 - AO356_00565 0.15 +0.1
122,486 - AO356_00565 0.25 -0.4
122,593 + AO356_00565 0.36 -0.1
122,738 - AO356_00565 0.50 +0.7
122,827 + AO356_00565 0.58 +0.0
122,827 + AO356_00565 0.58 +0.1
122,828 - AO356_00565 0.58 -0.4
122,828 - AO356_00565 0.58 -0.3
122,828 - AO356_00565 0.58 +1.1

Or see this region's nucleotide sequence