Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00525

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00515 and AO356_00520 are separated by 11 nucleotidesAO356_00520 and AO356_00525 overlap by 4 nucleotidesAO356_00525 and AO356_00530 are separated by 77 nucleotides AO356_00515: AO356_00515 - cobalt transporter, at 109,794 to 109,982 _00515 AO356_00520: AO356_00520 - cobalt transporter, at 109,994 to 110,689 _00520 AO356_00525: AO356_00525 - cobalamin biosynthesis protein CobE, at 110,686 to 111,090 _00525 AO356_00530: AO356_00530 - precorrin-4 C11-methyltransferase, at 111,168 to 111,914 _00530 Position (kb) 110 111 112Strain fitness (log2 ratio) -1 0 1at 110.006 kb on - strandat 110.006 kb on - strandat 110.270 kb on + strand, within AO356_00520at 110.271 kb on - strand, within AO356_00520at 110.271 kb on - strand, within AO356_00520at 110.805 kb on - strand, within AO356_00525at 110.820 kb on + strand, within AO356_00525at 111.177 kb on + strandat 111.177 kb on + strandat 111.178 kb on - strandat 111.178 kb on - strandat 111.261 kb on + strand, within AO356_00530at 111.262 kb on - strand, within AO356_00530at 111.262 kb on - strand, within AO356_00530at 111.584 kb on + strand, within AO356_00530at 111.585 kb on - strand, within AO356_00530at 111.782 kb on + strand, within AO356_00530at 111.782 kb on + strand, within AO356_00530at 111.879 kb on + strandat 111.944 kb on - strandat 111.944 kb on - strandat 111.945 kb on + strandat 111.946 kb on - strandat 111.946 kb on - strandat 111.998 kb on - strandat 112.056 kb on + strandat 112.056 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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110,006 - +0.2
110,006 - +0.2
110,270 + AO356_00520 0.40 +0.9
110,271 - AO356_00520 0.40 -0.1
110,271 - AO356_00520 0.40 +0.3
110,805 - AO356_00525 0.29 -0.5
110,820 + AO356_00525 0.33 -0.6
111,177 + +0.8
111,177 + +1.1
111,178 - +0.1
111,178 - +0.6
111,261 + AO356_00530 0.12 -0.9
111,262 - AO356_00530 0.13 +1.1
111,262 - AO356_00530 0.13 +0.5
111,584 + AO356_00530 0.56 +0.1
111,585 - AO356_00530 0.56 -0.0
111,782 + AO356_00530 0.82 +1.4
111,782 + AO356_00530 0.82 +0.4
111,879 + +0.1
111,944 - +0.7
111,944 - -0.9
111,945 + -0.3
111,946 - +0.4
111,946 - -0.6
111,998 - -0.0
112,056 + -0.1
112,056 + -1.2

Or see this region's nucleotide sequence