Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00420

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00415 and AO356_00420 are separated by 7 nucleotidesAO356_00420 and AO356_00425 are separated by 191 nucleotides AO356_00415: AO356_00415 - transporter, at 84,254 to 85,645 _00415 AO356_00420: AO356_00420 - 3-hydroxybutyrate dehydrogenase, at 85,653 to 86,429 _00420 AO356_00425: AO356_00425 - acetoacetyl-CoA synthetase, at 86,621 to 88,576 _00425 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 85.020 kb on - strand, within AO356_00415at 85.415 kb on - strand, within AO356_00415at 85.415 kb on - strand, within AO356_00415at 85.452 kb on + strand, within AO356_00415at 85.452 kb on + strand, within AO356_00415at 85.625 kb on + strandat 85.626 kb on - strandat 85.697 kb on + strandat 86.112 kb on + strand, within AO356_00420at 86.112 kb on + strand, within AO356_00420at 86.113 kb on - strand, within AO356_00420at 86.113 kb on - strand, within AO356_00420at 86.403 kb on - strandat 86.428 kb on - strandat 86.571 kb on - strandat 86.571 kb on - strandat 87.300 kb on - strand, within AO356_00425at 87.422 kb on + strand, within AO356_00425at 87.422 kb on + strand, within AO356_00425at 87.423 kb on - strand, within AO356_00425at 87.423 kb on - strand, within AO356_00425at 87.423 kb on - strand, within AO356_00425

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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85,020 - AO356_00415 0.55 +0.3
85,415 - AO356_00415 0.83 -2.2
85,415 - AO356_00415 0.83 +0.8
85,452 + AO356_00415 0.86 +0.4
85,452 + AO356_00415 0.86 -0.2
85,625 + +0.4
85,626 - +0.4
85,697 + -1.1
86,112 + AO356_00420 0.59 +1.7
86,112 + AO356_00420 0.59 +0.6
86,113 - AO356_00420 0.59 +1.1
86,113 - AO356_00420 0.59 +0.4
86,403 - +2.4
86,428 - -1.7
86,571 - +0.1
86,571 - +0.6
87,300 - AO356_00425 0.35 +0.1
87,422 + AO356_00425 0.41 +0.5
87,422 + AO356_00425 0.41 +0.0
87,423 - AO356_00425 0.41 +0.9
87,423 - AO356_00425 0.41 +0.3
87,423 - AO356_00425 0.41 -0.4

Or see this region's nucleotide sequence