Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00375

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00370 and AO356_00375 are separated by 156 nucleotidesAO356_00375 and AO356_00380 are separated by 410 nucleotides AO356_00370: AO356_00370 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 72,765 to 73,835 _00370 AO356_00375: AO356_00375 - hypothetical protein, at 73,992 to 74,966 _00375 AO356_00380: AO356_00380 - alpha/beta hydrolase, at 75,377 to 76,246 _00380 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1at 73.068 kb on + strand, within AO356_00370at 73.243 kb on - strand, within AO356_00370at 73.243 kb on - strand, within AO356_00370at 73.243 kb on - strand, within AO356_00370at 73.512 kb on + strand, within AO356_00370at 73.512 kb on + strand, within AO356_00370at 73.512 kb on + strand, within AO356_00370at 73.512 kb on + strand, within AO356_00370at 73.512 kb on + strand, within AO356_00370at 73.512 kb on + strand, within AO356_00370at 73.513 kb on - strand, within AO356_00370at 73.513 kb on - strand, within AO356_00370at 73.513 kb on - strand, within AO356_00370at 73.513 kb on - strand, within AO356_00370at 73.513 kb on - strand, within AO356_00370at 73.537 kb on + strand, within AO356_00370at 73.538 kb on - strand, within AO356_00370at 74.071 kb on + strandat 74.071 kb on + strandat 74.072 kb on - strandat 74.072 kb on - strandat 74.142 kb on - strand, within AO356_00375at 74.179 kb on + strand, within AO356_00375at 74.179 kb on + strand, within AO356_00375at 74.179 kb on + strand, within AO356_00375at 74.179 kb on + strand, within AO356_00375at 74.179 kb on + strand, within AO356_00375at 74.179 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.737 kb on + strand, within AO356_00375at 74.737 kb on + strand, within AO356_00375at 74.775 kb on - strand, within AO356_00375at 75.043 kb on + strandat 75.043 kb on + strandat 75.043 kb on + strandat 75.044 kb on - strandat 75.055 kb on + strandat 75.056 kb on - strandat 75.093 kb on - strandat 75.115 kb on - strandat 75.207 kb on + strandat 75.207 kb on + strandat 75.207 kb on + strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.219 kb on + strandat 75.219 kb on + strandat 75.220 kb on - strandat 75.220 kb on - strandat 75.231 kb on + strandat 75.243 kb on - strandat 75.302 kb on + strandat 75.902 kb on + strand, within AO356_00380at 75.902 kb on + strand, within AO356_00380at 75.902 kb on + strand, within AO356_00380at 75.903 kb on - strand, within AO356_00380at 75.966 kb on - strand, within AO356_00380

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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73,068 + AO356_00370 0.28 +0.2
73,243 - AO356_00370 0.45 +0.0
73,243 - AO356_00370 0.45 -0.8
73,243 - AO356_00370 0.45 -0.3
73,512 + AO356_00370 0.70 -0.5
73,512 + AO356_00370 0.70 -0.3
73,512 + AO356_00370 0.70 -1.3
73,512 + AO356_00370 0.70 -0.2
73,512 + AO356_00370 0.70 -0.0
73,512 + AO356_00370 0.70 -0.7
73,513 - AO356_00370 0.70 -0.0
73,513 - AO356_00370 0.70 -0.1
73,513 - AO356_00370 0.70 -1.2
73,513 - AO356_00370 0.70 +0.2
73,513 - AO356_00370 0.70 -0.1
73,537 + AO356_00370 0.72 +0.4
73,538 - AO356_00370 0.72 -1.5
74,071 + -2.4
74,071 + +0.3
74,072 - +0.7
74,072 - +1.1
74,142 - AO356_00375 0.15 +0.6
74,179 + AO356_00375 0.19 -0.4
74,179 + AO356_00375 0.19 -0.9
74,179 + AO356_00375 0.19 +0.7
74,179 + AO356_00375 0.19 -0.2
74,179 + AO356_00375 0.19 -0.8
74,179 + AO356_00375 0.19 -0.2
74,398 + AO356_00375 0.42 +0.2
74,398 + AO356_00375 0.42 +0.3
74,398 + AO356_00375 0.42 +0.4
74,398 + AO356_00375 0.42 +0.5
74,398 + AO356_00375 0.42 +0.1
74,398 + AO356_00375 0.42 -1.4
74,398 + AO356_00375 0.42 -1.5
74,398 + AO356_00375 0.42 +0.2
74,398 + AO356_00375 0.42 -1.4
74,399 - AO356_00375 0.42 +0.3
74,399 - AO356_00375 0.42 -0.2
74,399 - AO356_00375 0.42 -1.4
74,399 - AO356_00375 0.42 +0.7
74,399 - AO356_00375 0.42 +0.6
74,399 - AO356_00375 0.42 -0.3
74,399 - AO356_00375 0.42 +0.7
74,399 - AO356_00375 0.42 -0.2
74,399 - AO356_00375 0.42 -0.4
74,399 - AO356_00375 0.42 +0.1
74,399 - AO356_00375 0.42 -0.1
74,487 + AO356_00375 0.51 +0.1
74,487 + AO356_00375 0.51 -0.9
74,487 + AO356_00375 0.51 -0.9
74,487 + AO356_00375 0.51 -0.3
74,487 + AO356_00375 0.51 +0.7
74,488 - AO356_00375 0.51 -0.7
74,488 - AO356_00375 0.51 +0.3
74,488 - AO356_00375 0.51 +0.3
74,488 - AO356_00375 0.51 -0.5
74,488 - AO356_00375 0.51 +0.7
74,488 - AO356_00375 0.51 +0.1
74,488 - AO356_00375 0.51 +0.2
74,488 - AO356_00375 0.51 -0.7
74,488 - AO356_00375 0.51 -0.8
74,488 - AO356_00375 0.51 -0.5
74,737 + AO356_00375 0.76 -0.2
74,737 + AO356_00375 0.76 -0.1
74,775 - AO356_00375 0.80 -1.0
75,043 + +1.7
75,043 + -0.1
75,043 + -0.1
75,044 - -0.1
75,055 + +1.5
75,056 - -1.1
75,093 - -0.8
75,115 - +0.1
75,207 + +0.4
75,207 + -1.3
75,207 + -0.4
75,208 - +0.9
75,208 - -0.0
75,208 - +0.0
75,208 - +0.6
75,208 - -0.4
75,219 + +0.9
75,219 + -1.0
75,220 - +0.8
75,220 - -0.7
75,231 + -0.4
75,243 - +0.6
75,302 + -0.6
75,902 + AO356_00380 0.60 -1.7
75,902 + AO356_00380 0.60 +0.7
75,902 + AO356_00380 0.60 -1.0
75,903 - AO356_00380 0.60 -0.2
75,966 - AO356_00380 0.68 +0.1

Or see this region's nucleotide sequence